Ss1.1-Liv1-LVR010056H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGACCGTCCCTCGCAGTGCCACCATGCTGGCCTCAGGCTTGCTTCTCGTGGCTCTGC TGACCTGCCTGACCATAATGGTCTTGATGTCCGTCTGGCGCCAGAGGAAGCTCCAGGGGA AACTGCCCCCCGGACCCACCCCGCTGCCCTTCATCGGGAACTACCTGCAGCTGAACACGG AGCAGATGTACAACTCCCTCATGAAGATCAGCCAGCGCTATGGCCCTGTGTTCACCGTCC ACCTGGGGCCCCGGCGGATAGTGGTGCTGTGTGGATACGACGCGGTGAAGGAGGCCCTGG TGGACCAGGCTGAGGAATTCAGCGGGCGAGGCGAGCAGGCCACTTTCGACTGGCTCTTCA AAGGCTATGGCGTGGCCTTCAGCAACGGCGAGCGTGCCAAGCAGCTCCGGCGCTTCTCCA TCACCACGCTGCGGGACTTCGGCGTGGGCAAGCGGGGTATCGAGGAGCGCATCCAGGAGG AGGCGGGCTACCTCATCGAGGCCTTCCGGGGCACGCGCGGCGCGTTCATCGACCCCACCT ACTTCCTCAGCCGAACGGTTTCCAATGTCATCAGCTCCATTGTCTTCGGAGACCGCTTTG ACTATGAGGACAAAGAGTTCCTCGCACTGCTGCGGATGATGCTGGGAAGCTTTCAGTTCA CAGCTACCTCTACCGGACAGCTCTATGAGATGTTCTACTCGGTGATGAAACACCTGCCAG GGCCGCAGCAACAGGCATTTAAGGACCTGCAGGGGCTGGAGGACTTCATAGCCAGGAAGG TGGAACACAACCAGCGCACGCTGGATCCCAACTCCCCGCGAGACTTCATCGACTCCTTCC TCATCCGCATGCAGGAGGAGAAGAAGAATCCTGACACCGAGTTCTATTGGAAGAACCTGG TTCTGACCACACTGAACCTCTTCTTCGCGGGCACCGAGACGGTCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGACCGTCCCTCGCAGTGCCACCATGCTGGCCTCAGGCTTGCTTCTCGTGGCTCTGC TGACCTGCCTGACCATAATGGTCTTGATGTCCGTCTGGCGCCAGAGGAAGCTCCAGGGGA AACTGCCCCCCGGACCCACCCCGCTGCCCTTCATCGGGAACTACCTGCAGCTGAACACGG AGCAGATGTACAACTCCCTCATGAAGATCAGCCAGCGCTATGGCCCTGTGTTCACCGTCC ACCTGGGGCCCCGGCGGATAGTGGTGCTGTGTGGATACGACGCGGTGAAGGAGGCCCTGG TGGACCAGGCTGAGGAATTCAGCGGGCGAGGCGAGCAGGCCACTTTCGACTGGCTCTTCA AAGGCTATGGCGTGGCCTTCAGCAACGGCGAGCGTGCCAAGCAGCTCCGGCGCTTCTCCA TCACCACGCTGCGGGACTTCGGCGTGGGCAAGCGGGGTATCGAGGAGCGCATCCAGGAGG AGGCGGGCTACCTCATCGAGGCCTTCCGGGGCACGCGCGGCGCGTTCATCGACCCCACCT ACTTCCTCAGCCGAACGGTTTCCAATGTCATCAGCTCCATTGTCTTCGGAGACCGCTTTG ACTATGAGGACAAAGAGTTCCTCGCACTGCTGCGGATGATGCTGGGAAGCTTTCAGTTCA CAGCTACCTCTACCGGACAGCTCTATGAGATGTTCTACTCGGTGATGAAACACCTGCCAG GGCCGCAGCAACAGGCATTTAAGGACCTGCAGGGGCTGGAGGACTTCATAGCCAGGAAGG TGGAACACAACCAGCGCACGCTGGATCCCAACTCCCCGCGAGACTTCATCGACTCCTTCC TCATCCGCATGCAGGAGGAGAAGAAGAATCCTGACACCGAGTTCTATTGGAAGAACCTGG TTCTGACCACACTGAACCTCTTCTTCGCGGGCACCGAGACGGTCAGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 3-206, gnl|bosTau2|chr18 (45925059-45924855) | |
| 3-206, gnl|Hg17|chr19 (46079974-46079776) | |
| 3-206, gnl|Mm7|chr7 (23204439-23204641) | |
| 369-520, gnl|bosTau2|chr18 (45923083-45922932) | |
| 369-520, gnl|Hg17|chr19 (46078374-46078223) | |
| 369-520, gnl|Mm7|chr7 (23205757-23205908) | |
| 527-640, gnl|bosTau2|chr18 (45947926-45947813) | |
| 527-640, gnl|canFam2|chr1 (115785922-115785774) | |
| 527-640, gnl|danRer3|chr15 (28698256-28698109) | |
| 527-640, gnl|dasNov1|scaffold_83921 (2189-2042) | |
| 527-640, gnl|echTel1|scaffold_303543 (25132-24985) | |
| 527-640, gnl|fr1|chrUn (97604376-97604258) | |
| 527-640, gnl|galGal2|chr6 (15803916-15803788) | |
| 527-640, gnl|hg17|chr19 (46255229-46255377) | |
| 527-640, gnl|Hg17|chr19 (46255344-46255231) | |
| 527-640, gnl|loxAfr1|scaffold_5844 (29985-29837) | |
| 527-640, gnl|mm7|chr7 (23711515-23711369) | |
| 527-640, gnl|Mm7|chr7 (23711398-23711511) | |
| 527-640, gnl|monDom2|scaffold_149 (640781-640921) | |
| 527-640, gnl|oryCun1|scaffold_210815 (6703-6560) | |
| 527-640, gnl|panTro1|chr20 (43288522-43288427) | |
| 527-640, gnl|rheMac2|chr19 (47442200-47442348) | |
| 527-640, gnl|rn3|chr1 (82001608-82001461) | |
| 527-640, gnl|tetNig1|chrUn_random (42237172-42237270) | |
| 527-640, gnl|xenTro1|scaffold_2136 (29629-29475) | |
| 678-858, gnl|bosTau2|chr18 (45921199-45921019) | |
| 678-858, gnl|canFam2|chr1 (115843460-115843608) | |
| 678-858, gnl|danRer3|chr15 (28698710-28698582) | |
| 678-858, gnl|dasNov1|scaffold_205860 (4449-4597) | |
| 678-858, gnl|echTel1|scaffold_290566 (121036-121184) | |
| 678-858, gnl|fr1|chrUn (97604696-97604556) | |
| 678-858, gnl|galGal2|chr6 (15804582-15804441) | |
| 678-858, gnl|hg17|chr19 (46044611-46044759) | |
| 678-858, gnl|Hg17|chr19 (46076684-46076504) | |
| 678-858, gnl|loxAfr1|scaffold_61989 (360-212) | |
| 678-858, gnl|mm7|chr7 (23951532-23951385) | |
| 678-858, gnl|Mm7|chr7 (23207948-23208128) | |
| 678-858, gnl|monDom2|scaffold_149 (549722-549870) | |
| 678-858, gnl|oryCun1|scaffold_107709 (5935-6076) | |
| 678-858, gnl|panTro1|chr20 (43289934-43289786) | |
| 678-858, gnl|rheMac2|chr19 (47223187-47223335) | |
| 678-858, gnl|rn3|chr1 (82125167-82125020) | |
| 678-858, gnl|tetNig1|chr16 (6241575-6241435) | |
| 678-858, gnl|xenTro1|scaffold_1232 (208891-208750) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-206, gnl|bosTau2|chr18 (45925059-45924855) | |
| 3-206, gnl|Hg17|chr19 (46079974-46079776) | |
| 3-206, gnl|Mm7|chr7 (23204439-23204641) | |
| 369-520, gnl|bosTau2|chr18 (45923083-45922932) | |
| 369-520, gnl|Hg17|chr19 (46078374-46078223) | |
| 369-520, gnl|Mm7|chr7 (23205757-23205908) | |
| 527-640, gnl|bosTau2|chr18 (45947926-45947813) | |
| 527-640, gnl|canFam2|chr1 (115785922-115785774) | |
| 527-640, gnl|danRer3|chr15 (28698256-28698109) | |
| 527-640, gnl|dasNov1|scaffold_83921 (2189-2042) | |
| 527-640, gnl|echTel1|scaffold_303543 (25132-24985) | |
| 527-640, gnl|fr1|chrUn (97604376-97604258) | |
| 527-640, gnl|galGal2|chr6 (15803916-15803788) | |
| 527-640, gnl|hg17|chr19 (46255229-46255377) | |
| 527-640, gnl|Hg17|chr19 (46255344-46255231) | |
| 527-640, gnl|loxAfr1|scaffold_5844 (29985-29837) | |
| 527-640, gnl|mm7|chr7 (23711515-23711369) | |
| 527-640, gnl|Mm7|chr7 (23711398-23711511) | |
| 527-640, gnl|monDom2|scaffold_149 (640781-640921) | |
| 527-640, gnl|oryCun1|scaffold_210815 (6703-6560) | |
| 527-640, gnl|panTro1|chr20 (43288522-43288427) | |
| 527-640, gnl|rheMac2|chr19 (47442200-47442348) | |
| 527-640, gnl|rn3|chr1 (82001608-82001461) | |
| 527-640, gnl|tetNig1|chrUn_random (42237172-42237270) | |
| 527-640, gnl|xenTro1|scaffold_2136 (29629-29475) | |
| 678-858, gnl|bosTau2|chr18 (45921199-45921019) | |
| 678-858, gnl|canFam2|chr1 (115843460-115843608) | |
| 678-858, gnl|danRer3|chr15 (28698710-28698582) | |
| 678-858, gnl|dasNov1|scaffold_205860 (4449-4597) | |
| 678-858, gnl|echTel1|scaffold_290566 (121036-121184) | |
| 678-858, gnl|fr1|chrUn (97604696-97604556) | |
| 678-858, gnl|galGal2|chr6 (15804582-15804441) | |
| 678-858, gnl|hg17|chr19 (46044611-46044759) | |
| 678-858, gnl|Hg17|chr19 (46076684-46076504) | |
| 678-858, gnl|loxAfr1|scaffold_61989 (360-212) | |
| 678-858, gnl|mm7|chr7 (23951532-23951385) | |
| 678-858, gnl|Mm7|chr7 (23207948-23208128) | |
| 678-858, gnl|monDom2|scaffold_149 (549722-549870) | |
| 678-858, gnl|oryCun1|scaffold_107709 (5935-6076) | |
| 678-858, gnl|panTro1|chr20 (43289934-43289786) | |
| 678-858, gnl|rheMac2|chr19 (47223187-47223335) | |
| 678-858, gnl|rn3|chr1 (82125167-82125020) | |
| 678-858, gnl|tetNig1|chr16 (6241575-6241435) | |
| 678-858, gnl|xenTro1|scaffold_1232 (208891-208750) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.531209) | |
| cli (0.305623) |