Ss1.1-Liv1-LVR010057A01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCACTGAGTGGGAGCTGTGTTGACTACCATTACTTCTTCGTTTGTCCTCAATTATGTCT GGGATGGTGGCTCTGCGGCTCCCCAGAGGCCTTTGGACAGCGGCCTTGACGGTGATGCTG GTGGTGCTGGGTGCTCCAGTGGCTGAGGGCAGAGACTCTCCACAGGATTTCGTGGTCCAG TTTAAGGGCGAGTGCTACTTCTTCAACGGAACGCAGCGGGTGCGGCTCGTGACCAGATTC ATCTACAACCAGGAGGAGTACGCGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTG ACCCCGCTGGGGCGGCCGGACGCCGACTACTGGAACAGCCAGAAGGACGTCCTGGAGCAG ACGCGGGCCGAGCTGGACACGGTGTGCAAACACAACTACCAGATAGAGGAAGGCACGACC CTGCAGCGGCGAGTGCAACCTACAGTGACTATCTCCCCATCCAAGGCAGAGGCTCTAAAC CACCACAACCTGCTGGTCTGTGCGGTGACAGATTTCTATCCAAGCCAGGTGAAAGTCCAG TGGTTCCGGAATGGCCAGGAGGAGACAGCTGGCGTTGTGTCCACTCCTCTTATTAGGAAC GGAGACTGGACCTACCAGGTGCTCGTGATGCTAGAGATGAATCTCCAGCGAGGAGATGTC TACACCTGCCGCGTGGAGCACTCCAGCCTCCAGAGCCCCATCTTGGTGGAGTGGCGGGCA CAGTCTGAATCTGCCCAGAGCAAGATGCTGAGCGGTGTCGGGGGCTTCGTGCTGGGGCTG ATCTTCCTCGGGCTGGGCCTTTTCATCCATCACAGGAGTCAGAAGGGGCTCGTGCGCTGA ATCCTGAAGATACTTTGGGGGTTGGTTTTTGCTCTTCTTTAAATGCCTGTCTGTTCTTGC CTGGAATTCCCATACCCCTGCCAGCTTGTTCCTCTCTGAAGTCAGATCCTACAGTGACAC TGATGCAGTCACCAGGGCACTTCCTGTGATCCCCACTTCAAGGCTCTGGCTGTGAAGCTT CTTCCTGCACTGACCCCAGCACCTCTGCCTGAGTGCAGCCAGTTGTGTCTACTCAGACCA CAAGGAACTTTTCTGTTCCTATTTCCCCTCAACAGACTGTGCAAGAGAAGCACATTGAAA CCGTTTACCTGGCTGTAGAGTGCTTTTTAAAAAAATCATAATTAAACATGATTATGAGTT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCACTGAGTGGGAGCTGTGTTGACTACCATTACTTCTTCGTTTGTCCTCAATTATGTCT GGGATGGTGGCTCTGCGGCTCCCCAGAGGCCTTTGGACAGCGGCCTTGACGGTGATGCTG GTGGTGCTGGGTGCTCCAGTGGCTGAGGGCAGAGACTCTCCACAGGATTTCGTGGTCCAG TTTAAGGGCGAGTGCTACTTCTTCAACGGAACGCAGCGGGTGCGGCTCGTGACCAGATTC ATCTACAACCAGGAGGAGTACGCGCGCTTCGACAGCGACGTGGGGGAGTACCGGGCGGTG ACCCCGCTGGGGCGGCCGGACGCCGACTACTGGAACAGCCAGAAGGACGTCCTGGAGCAG ACGCGGGCCGAGCTGGACACGGTGTGCAAACACAACTACCAGATAGAGGAAGGCACGACC CTGCAGCGGCGAGTGCAACCTACAGTGACTATCTCCCCATCCAAGGCAGAGGCTCTAAAC CACCACAACCTGCTGGTCTGTGCGGTGACAGATTTCTATCCAAGCCAGGTGAAAGTCCAG TGGTTCCGGAATGGCCAGGAGGAGACAGCTGGCGTTGTGTCCACTCCTCTTATTAGGAAC GGAGACTGGACCTACCAGGTGCTCGTGATGCTAGAGATGAATCTCCAGCGAGGAGATGTC TACACCTGCCGCGTGGAGCACTCCAGCCTCCAGAGCCCCATCTTGGTGGAGTGGCGGGCA CAGTCTGAATCTGCCCAGAGCAAGATGCTGAGCGGTGTCGGGGGCTTCGTGCTGGGGCTG ATCTTCCTCGGGCTGGGCCTTTTCATCCATCACAGGAGTCAGAAGGGGCTCGTGCGCTGA ATCCTGAAGATACTTTGGGGGTTGGTTTTTGCTCTTCTTTAAATGCCTGTCTGTTCTTGC CTGGAATTCCCATACCCCTGCCAGCTTGTTCCTCTCTGAAGTCAGATCCTACAGTGACAC TGATGCAGTCACCAGGGCACTTCCTGTGATCCCCACTTCAAGGCTCTGGCTGTGAAGCTT CTTCCTGCACTGACCCCAGCACCTCTGCCTGAGTGCAGCCAGTTGTGTCTACTCAGACCA CAAGGAACTTTTCTGTTCCTATTTCCCCTCAACAGACTGTGCAAGAGAAGCACATTGAAA CCGTTTACCTGGCTGTAGAGTGCTTTTTAAAAAAATCATAATTAAACATGATTATGAGTT AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 591-716, - strand, RNAz p=0.852545 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 591-716, - strand, RNAz p=0.852545 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 157-402, gnl|bosTau2|chr23 (22932416-22932663) | |
| 157-402, gnl|Hg17|chr6 (32633950-32633703) | |
| 157-402, gnl|Mm7|chr17 (32386907-32387154) | |
| 432-716, gnl|bosTau2|chr23 (5446517-5446233) | |
| 432-716, gnl|canFam2|chr12 (5382994-5383292) | |
| 432-716, gnl|dasNov1|scaffold_148284 (292-4) | |
| 432-716, gnl|echTel1|scaffold_68652 (768-472) | |
| 432-716, gnl|hg17|chr6 (32807162-32807454) | |
| 432-716, gnl|Hg17|chr6 (32807452-32807174) | |
| 432-716, gnl|loxAfr1|scaffold_115569 (4276-3994) | |
| 432-716, gnl|mm7|chr17 (32391791-32391493) | |
| 432-716, gnl|Mm7|chr17 (32345159-32345443) | |
| 432-716, gnl|monDom2|scaffold_42 (462853-463154) | |
| 432-716, gnl|oryCun1|scaffold_178605 (31791-32089) | |
| 432-716, gnl|panTro1|chr5 (33249958-33250250) | |
| 432-716, gnl|rheMac2|chr4 (32393778-32394077) | |
| 432-716, gnl|rn3|chr20 (4733016-4733314) | |
| 718-827, gnl|bosTau2|chr23 (22936840-22936949) | |
| 718-827, gnl|canFam2|chr12 (5156651-5156856) | |
| 718-827, gnl|dasNov1|scaffold_23750 (1231-1426) | |
| 718-827, gnl|echTel1|scaffold_221313 (7858-8048) | |
| 718-827, gnl|hg17|chr6 (32629607-32629799) | |
| 718-827, gnl|Hg17|chr6 (32629719-32629610) | |
| 718-827, gnl|loxAfr1|scaffold_61179 (3411-3219) | |
| 718-827, gnl|mm7|chr17 (32413102-32412911) | |
| 718-827, gnl|Mm7|chr17 (32392370-32392479) | |
| 718-827, gnl|monDom2|scaffold_42 (462297-462489) | |
| 718-827, gnl|oryCun1|scaffold_173411 (42093-41902) | |
| 718-827, gnl|panTro1|chr5 (33030973-33031165) | |
| 718-827, gnl|rheMac2|chr4 (32277429-32277622) | |
| 718-827, gnl|rn3|chr20 (4672856-4673049) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-402, gnl|bosTau2|chr23 (22932416-22932663) | |
| 157-402, gnl|Hg17|chr6 (32633950-32633703) | |
| 157-402, gnl|Mm7|chr17 (32386907-32387154) | |
| 432-716, gnl|bosTau2|chr23 (5446517-5446233) | |
| 432-716, gnl|canFam2|chr12 (5382994-5383292) | |
| 432-716, gnl|dasNov1|scaffold_148284 (292-4) | |
| 432-716, gnl|echTel1|scaffold_68652 (768-472) | |
| 432-716, gnl|hg17|chr6 (32807162-32807454) | |
| 432-716, gnl|Hg17|chr6 (32807452-32807174) | |
| 432-716, gnl|loxAfr1|scaffold_115569 (4276-3994) | |
| 432-716, gnl|mm7|chr17 (32391791-32391493) | |
| 432-716, gnl|Mm7|chr17 (32345159-32345443) | |
| 432-716, gnl|monDom2|scaffold_42 (462853-463154) | |
| 432-716, gnl|oryCun1|scaffold_178605 (31791-32089) | |
| 432-716, gnl|panTro1|chr5 (33249958-33250250) | |
| 432-716, gnl|rheMac2|chr4 (32393778-32394077) | |
| 432-716, gnl|rn3|chr20 (4733016-4733314) | |
| 718-827, gnl|bosTau2|chr23 (22936840-22936949) | |
| 718-827, gnl|canFam2|chr12 (5156651-5156856) | |
| 718-827, gnl|dasNov1|scaffold_23750 (1231-1426) | |
| 718-827, gnl|echTel1|scaffold_221313 (7858-8048) | |
| 718-827, gnl|hg17|chr6 (32629607-32629799) | |
| 718-827, gnl|Hg17|chr6 (32629719-32629610) | |
| 718-827, gnl|loxAfr1|scaffold_61179 (3411-3219) | |
| 718-827, gnl|mm7|chr17 (32413102-32412911) | |
| 718-827, gnl|Mm7|chr17 (32392370-32392479) | |
| 718-827, gnl|monDom2|scaffold_42 (462297-462489) | |
| 718-827, gnl|oryCun1|scaffold_173411 (42093-41902) | |
| 718-827, gnl|panTro1|chr5 (33030973-33031165) | |
| 718-827, gnl|rheMac2|chr4 (32277429-32277622) | |
| 718-827, gnl|rn3|chr20 (4672856-4673049) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ill (0.702371) | |
| lnt (0.569233) | |
| jca (0.45584) | |
| col (0.195008) | |
| nco (0.161734) | |
| spl (0.143184) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.702371) | |
| lnt (0.569233) | |
| jca (0.45584) | |
| col (0.195008) | |
| nco (0.161734) | |
| spl (0.143184) | |
| med (0.116252) |