Non-Coding RNA Search

Ss1.1-Liv1-LVR010057C08.5

Sequence:


               
               ATCACATCCTCTACTTCTTGCTGCAGGATAGCTCTTCAAGTCCTTGATCTGTGTGTCTTT
GGCTTCTTTCTTGGTTCCACCGTAAAACAAAACTGCAGTACGTCCATAGCCACATAAGTT
GCCAAGGCCCTTTGAGCGTCATGAAGATCTTTTCCTGCTACCAGACATTCAGGTTCATCC
GACTCACCAAGCCTCCTGGCCGGCGCTTTCACAAAGACTACCAGCTGCAGGTGCCTCTGA
CTCTTGATGACCTCGAAGCCATAATGCTCTGTGAGCGACCGCTGCCGAAGAGCTTCAACT
TCGCTGCGGACGTGCTGGACCAGTGGTCCCAAAAGGAAAAGACAGGAGAGAGACCAGCCA
ACCCAGCCCTGTGGTGGGTGAATAGCCAGGGAAACGAGGTGAAATGGAGCTTTAGAGAAC
TGGGCTCCTTGTCCCGAAAAGCTGCCAATGTGCTCACCAAGTCCTGCGGCCTAGAAAGAG
GAGACCGAGTGGCCATGATTCTTCCCCGAATCCCAGAGTGGTGGCTCCTAAATGTGGCTT
GTATGAGAACAGGGCTTGTCTTCATGCCGGGAACAACCCAGCTGACAGCAAAAGACCTCC
TCTATCGGCTGCGAGCATCCAAGGCCAAGTGCATTGTGGCCAGTGATGAGGTGGTCCCTG
CAGTGGAGTCTGCTGCGTCAGAGTGTCCCGACTTGAAGACCAAACTCCTGGTGTCTCCAC
ACAGCCGGAATGGGTGGCTCAGCTTCCAGGAGTTATTTCAAAACGCCTCTACAGAGCACA
GCTGTGTGGAGACAGGAAGTCAAGAATCAATGGCCATTTTTTTCACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCACATCCTCTACTTCTTGCTGCAGGATAGCTCTTCAAGTCCTTGATCTGTGTGTCTTT
GGCTTCTTTCTTGGTTCCACCGTAAAACAAAACTGCAGTACGTCCATAGCCACATAAGTT
GCCAAGGCCCTTTGAGCGTCATGAAGATCTTTTCCTGCTACCAGACATTCAGGTTCATCC
GACTCACCAAGCCTCCTGGCCGGCGCTTTCACAAAGACTACCAGCTGCAGGTGCCTCTGA
CTCTTGATGACCTCGAAGCCATAATGCTCTGTGAGCGACCGCTGCCGAAGAGCTTCAACT
TCGCTGCGGACGTGCTGGACCAGTGGTCCCAAAAGGAAAAGACAGGAGAGAGACCAGCCA
ACCCAGCCCTGTGGTGGGTGAATAGCCAGGGAAACGAGGTGAAATGGAGCTTTAGAGAAC
TGGGCTCCTTGTCCCGAAAAGCTGCCAATGTGCTCACCAAGTCCTGCGGCCTAGAAAGAG
GAGACCGAGTGGCCATGATTCTTCCCCGAATCCCAGAGTGGTGGCTCCTAAATGTGGCTT
GTATGAGAACAGGGCTTGTCTTCATGCCGGGAACAACCCAGCTGACAGCAAAAGACCTCC
TCTATCGGCTGCGAGCATCCAAGGCCAAGTGCATTGTGGCCAGTGATGAGGTGGTCCCTG
CAGTGGAGTCTGCTGCGTCAGAGTGTCCCGACTTGAAGACCAAACTCCTGGTGTCTCCAC
ACAGCCGGAATGGGTGGCTCAGCTTCCAGGAGTTATTTCAAAACGCCTCTACAGAGCACA
GCTGTGTGGAGACAGGAAGTCAAGAATCAATGGCCATTTTTTTCACTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55637789|ref|XP_508984.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55637789|ref|XP_508984.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               379-498, + strand, RNAz p=0.580399

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-498, + strand, RNAz p=0.580399

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               340-553, gnl|bosTau2|chr25 (18372873-18373086)
               

               
               340-553, gnl|Hg17|chr12 (7350394-7350607)
               

               
               340-553, gnl|Mm7|chr7 (115616883-115617096)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               340-553, gnl|bosTau2|chr25 (18372873-18373086)
               

               
               340-553, gnl|Hg17|chr12 (7350394-7350607)
               

               
               340-553, gnl|Mm7|chr7 (115616883-115617096)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lun (0.300978)
               

               
               cki (0.165235)
               

               
               cli (0.152812)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               cki (0.165235)
               

               
               cli (0.152812)

	340-553, gnl\|bosTau2\|chr25 (18372873-18373086)
	340-553, gnl\|Hg17\|chr12 (7350394-7350607)
	340-553, gnl\|Mm7\|chr7 (115616883-115617096)