Ss1.1-Liv1-LVR010059C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCGGAGGTCGGGAGTCCAACCCAACCGGGGACTGTCAGGATCCCGAAATTTCTCGAGG GCATTTTAGGCGGTTCCGTTATGAGGAAGTGGCCGGACCCGAAGAGGCGCTGAGCCGGCT CAGGGAACTTTGTCGTCGGTGGCTGAGGCCCGAAATGCACTCGAAAGAGCAGATCCTAGA GCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAACTCCAGGCCTGGGTGCG GAAGCACTGCCCAAAGAGCGGGGAGGAGGCTGCCGCCGTGGTGCGCGCTCTTCAGAGAGC GCCTGGTGGGACCTCACTCCAGGGGTTGGAGACAGTCCAGGAGGTGGCTGCATCTCTCAC CTGGGAGGAGTGGGAGCGTCTGGACGCAGCACAGAGGACCGGCTGCAGGAAGAGTGCGCC CAAGGGTTATGGCCACACGGGCTTGCCAGGTAAGGGGACTGGACCCGAGAACAAAGAGTT GATTCCAAAGCAAGAAATTCTAGGAGCGGAGCCCCGTGGGTGGCTGCACGGGTCCCAGGA CATAGGTTAGCAGTCTTCCGAGTGGGGTGACGCCCACAGGGACAGGGTAGAAAAGCCCTC AGGAAACCTCTCCTCCCTGAAACTTTTACCTTTGGACGAGGAGCAGGGAGTCTCCAGCAT CTGCGATCTTAACTGGGCCAGGGAAGAAGAAGAGGACCCCAAAAATAACGAATCAGGGAC CAGTGCCAGAAGAGATCCTTAACCTCTCTGTCAGCAAGGAACTCCTACTTTTGAATTTTG AAGGCAGTGGATATTGTGGCTGTACTGTCATGTTTGCACGGAGAAAGCAGATGCCACTGT GACGCTTTATCCTCGGTGTGTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCGGAGGTCGGGAGTCCAACCCAACCGGGGACTGTCAGGATCCCGAAATTTCTCGAGG GCATTTTAGGCGGTTCCGTTATGAGGAAGTGGCCGGACCCGAAGAGGCGCTGAGCCGGCT CAGGGAACTTTGTCGTCGGTGGCTGAGGCCCGAAATGCACTCGAAAGAGCAGATCCTAGA GCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAACTCCAGGCCTGGGTGCG GAAGCACTGCCCAAAGAGCGGGGAGGAGGCTGCCGCCGTGGTGCGCGCTCTTCAGAGAGC GCCTGGTGGGACCTCACTCCAGGGGTTGGAGACAGTCCAGGAGGTGGCTGCATCTCTCAC CTGGGAGGAGTGGGAGCGTCTGGACGCAGCACAGAGGACCGGCTGCAGGAAGAGTGCGCC CAAGGGTTATGGCCACACGGGCTTGCCAGGTAAGGGGACTGGACCCGAGAACAAAGAGTT GATTCCAAAGCAAGAAATTCTAGGAGCGGAGCCCCGTGGGTGGCTGCACGGGTCCCAGGA CATAGGTTAGCAGTCTTCCGAGTGGGGTGACGCCCACAGGGACAGGGTAGAAAAGCCCTC AGGAAACCTCTCCTCCCTGAAACTTTTACCTTTGGACGAGGAGCAGGGAGTCTCCAGCAT CTGCGATCTTAACTGGGCCAGGGAAGAAGAAGAGGACCCCAAAAATAACGAATCAGGGAC CAGTGCCAGAAGAGATCCTTAACCTCTCTGTCAGCAAGGAACTCCTACTTTTGAATTTTG AAGGCAGTGGATATTGTGGCTGTACTGTCATGTTTGCACGGAGAAAGCAGATGCCACTGT GACGCTTTATCCTCGGTGTGTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 139-258, + strand, RNAz p=0.868742 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 139-258, + strand, RNAz p=0.868742 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 60-323, gnl|bosTau2|chr23 (24622923-24623186) | |
| 60-323, gnl|canFam2|chr35 (28268563-28268864) | |
| 60-323, gnl|dasNov1|scaffold_81578 (3829-3541) | |
| 60-323, gnl|echTel1|scaffold_257234 (702-1003) | |
| 60-323, gnl|hg17|chr6 (28161281-28161582) | |
| 60-323, gnl|Hg17|chr6 (28161386-28161649) | |
| 60-323, gnl|loxAfr1|scaffold_1486 (29253-28952) | |
| 60-323, gnl|mm7|chr13 (20845134-20845432) | |
| 60-323, gnl|Mm7|chr13 (20729778-20730041) | |
| 60-323, gnl|monDom2|scaffold_88 (3071433-3071734) | |
| 60-323, gnl|oryCun1|scaffold_179404 (55899-55601) | |
| 60-323, gnl|panTro1|chr5 (28616888-28617189) | |
| 60-323, gnl|rheMac2|chr4 (27770783-27771084) | |
| 60-323, gnl|rn3|chr18 (15814077-15813779) | |
| 60-323, gnl|xenTro1|scaffold_20796 (3062-2728) | |
| 62-313, gnl|bosTau2|chr18 (56398592-56398341) | |
| 62-313, gnl|Hg17|chr19 (63774433-63774182) | |
| 62-313, gnl|Mm7|chr7 (11639584-11639333) | |
| 69-303, gnl|bosTau2|chr15 (19143609-19143375) | |
| 69-303, gnl|canFam2|chr5 (13721301-13720956) | |
| 69-303, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 69-303, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 69-303, gnl|hg17|chr11 (123106317-123106662) | |
| 69-303, gnl|Hg17|chr11 (123106658-123106424) | |
| 69-303, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 69-303, gnl|mm7|chr9 (40137679-40137340) | |
| 69-303, gnl|Mm7|chr9 (40137342-40137576) | |
| 69-303, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 69-303, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 69-303, gnl|panTro1|chr9 (125147706-125148051) | |
| 69-303, gnl|rheMac2|chr14 (122093376-122093720) | |
| 69-303, gnl|rn3|chr8 (43167739-43167398) | |
| 69-303, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 447-726, gnl|bosTau2|chr25 (34762371-34762647) | |
| 447-726, gnl|Hg17|chr7 (98736908-98736620) | |
| 447-726, gnl|Mm7|chr5 (144224842-144224563) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-323, gnl|bosTau2|chr23 (24622923-24623186) | |
| 60-323, gnl|canFam2|chr35 (28268563-28268864) | |
| 60-323, gnl|dasNov1|scaffold_81578 (3829-3541) | |
| 60-323, gnl|echTel1|scaffold_257234 (702-1003) | |
| 60-323, gnl|hg17|chr6 (28161281-28161582) | |
| 60-323, gnl|Hg17|chr6 (28161386-28161649) | |
| 60-323, gnl|loxAfr1|scaffold_1486 (29253-28952) | |
| 60-323, gnl|mm7|chr13 (20845134-20845432) | |
| 60-323, gnl|Mm7|chr13 (20729778-20730041) | |
| 60-323, gnl|monDom2|scaffold_88 (3071433-3071734) | |
| 60-323, gnl|oryCun1|scaffold_179404 (55899-55601) | |
| 60-323, gnl|panTro1|chr5 (28616888-28617189) | |
| 60-323, gnl|rheMac2|chr4 (27770783-27771084) | |
| 60-323, gnl|rn3|chr18 (15814077-15813779) | |
| 60-323, gnl|xenTro1|scaffold_20796 (3062-2728) | |
| 62-313, gnl|bosTau2|chr18 (56398592-56398341) | |
| 62-313, gnl|Hg17|chr19 (63774433-63774182) | |
| 62-313, gnl|Mm7|chr7 (11639584-11639333) | |
| 69-303, gnl|bosTau2|chr15 (19143609-19143375) | |
| 69-303, gnl|canFam2|chr5 (13721301-13720956) | |
| 69-303, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 69-303, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 69-303, gnl|hg17|chr11 (123106317-123106662) | |
| 69-303, gnl|Hg17|chr11 (123106658-123106424) | |
| 69-303, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 69-303, gnl|mm7|chr9 (40137679-40137340) | |
| 69-303, gnl|Mm7|chr9 (40137342-40137576) | |
| 69-303, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 69-303, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 69-303, gnl|panTro1|chr9 (125147706-125148051) | |
| 69-303, gnl|rheMac2|chr14 (122093376-122093720) | |
| 69-303, gnl|rn3|chr8 (43167739-43167398) | |
| 69-303, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 447-726, gnl|bosTau2|chr25 (34762371-34762647) | |
| 447-726, gnl|Hg17|chr7 (98736908-98736620) | |
| 447-726, gnl|Mm7|chr5 (144224842-144224563) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) |