Ss1.1-Liv1-LVR010060F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGAGGAGGTACCGCACGACTGTCCCGGGACCGGCAGTGCCCAGGCGGGTCGAGGGGCT TCATGTCAGGGGTGTCCGAACCAGCGGCTATGCGCTTCTGGAGCTGGTGCCGCGCCGGAC CCGGCCATAGAGGAAATCAAAGAGAAAATGAAGACCGTGAAACACAAGATCTTGGTGCTG TCTGGGAAAGGCGGCGTGGGGAAAAGCACCTTCAGCGCCCACCTGGCCCACGGCCTAGCG GAGGATGAGAACACGCAGGTGGCTCTCCTAGACATTGACATCTGCGGGCCGTCGATCCCC AAGATCATGGGACTGGAGGGAGAACAGGTTCACCAGAGCGGCTCGGGCTGGTCTCCAGTG TTCTTGGAAGACAACTTGGGGGTGATGTCGGTGGGTTTCTTGCTCAGCAGTCCTGATGAC GCCGTCATCTGGAGAGGACCAAAGAAAAATGGCATGATCAAGCAGTTCCTCCGAGACGTG GACTGGGGGGAGCTCGACTACCTCATCGTGGACACCCCGCCCGGGACGTCGGACGAGCAC CTGTCGGCCGTGCAGTACCTGGCCGGGGCGCACATCGACGGGGCGGTGCTCATCACCACG CCGCAGGAGGTGTCACTCCAGGACGTGCGCAAAGAGATCAGCTTCTGCCACAAGGTGAAG CTGCCCATCATCGGGGTGGTGGAGAACATGAGCAGCTTCCTCTGCCCCCGCTGCCAGAAA GAGTCTCAGATCTTCCCGCCCACGACCGGGGGGGCGGAGGTCATGTGCCAGGACCTGAAG ATCCCGCTCCTCGGCAAGGTGCCTCTGGATCCGCGCATAGCTAAGAGTTGTGACAAAGGA CAGTCTTTTTTGGTCGAAGCTCCGGATTCACCAGCCACCCTGGCCTATAGAAGTATAATC CAGAGAATCCGGGAGTTCTGCGATCTGCGTCCGCCTGAAGGAGCGAACCACGTCGCCTCC TGAAGGAGGAAGGGTGTCCGGGGCACAGGCAGCGCATCCATCCCCCGAGCAGCCTGGGGA GAAGGTGGGGCGGCACAGGCAGGAAGGGCCCAGCCCCGGGCATGGCGTGGAGAGCCTTGC AGAGACTTTACTCGTCGTTCCCTGAGCACAAGCTGTACAGAGCCGTGTTTACAGACGTGC CATTTAGAAAATAAAAACCTCTCAAGCCTCGGCCCCGAGGCCTGCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGAGGAGGTACCGCACGACTGTCCCGGGACCGGCAGTGCCCAGGCGGGTCGAGGGGCT TCATGTCAGGGGTGTCCGAACCAGCGGCTATGCGCTTCTGGAGCTGGTGCCGCGCCGGAC CCGGCCATAGAGGAAATCAAAGAGAAAATGAAGACCGTGAAACACAAGATCTTGGTGCTG TCTGGGAAAGGCGGCGTGGGGAAAAGCACCTTCAGCGCCCACCTGGCCCACGGCCTAGCG GAGGATGAGAACACGCAGGTGGCTCTCCTAGACATTGACATCTGCGGGCCGTCGATCCCC AAGATCATGGGACTGGAGGGAGAACAGGTTCACCAGAGCGGCTCGGGCTGGTCTCCAGTG TTCTTGGAAGACAACTTGGGGGTGATGTCGGTGGGTTTCTTGCTCAGCAGTCCTGATGAC GCCGTCATCTGGAGAGGACCAAAGAAAAATGGCATGATCAAGCAGTTCCTCCGAGACGTG GACTGGGGGGAGCTCGACTACCTCATCGTGGACACCCCGCCCGGGACGTCGGACGAGCAC CTGTCGGCCGTGCAGTACCTGGCCGGGGCGCACATCGACGGGGCGGTGCTCATCACCACG CCGCAGGAGGTGTCACTCCAGGACGTGCGCAAAGAGATCAGCTTCTGCCACAAGGTGAAG CTGCCCATCATCGGGGTGGTGGAGAACATGAGCAGCTTCCTCTGCCCCCGCTGCCAGAAA GAGTCTCAGATCTTCCCGCCCACGACCGGGGGGGCGGAGGTCATGTGCCAGGACCTGAAG ATCCCGCTCCTCGGCAAGGTGCCTCTGGATCCGCGCATAGCTAAGAGTTGTGACAAAGGA CAGTCTTTTTTGGTCGAAGCTCCGGATTCACCAGCCACCCTGGCCTATAGAAGTATAATC CAGAGAATCCGGGAGTTCTGCGATCTGCGTCCGCCTGAAGGAGCGAACCACGTCGCCTCC TGAAGGAGGAAGGGTGTCCGGGGCACAGGCAGCGCATCCATCCCCCGAGCAGCCTGGGGA GAAGGTGGGGCGGCACAGGCAGGAAGGGCCCAGCCCCGGGCATGGCGTGGAGAGCCTTGC AGAGACTTTACTCGTCGTTCCCTGAGCACAAGCTGTACAGAGCCGTGTTTACAGACGTGC CATTTAGAAAATAAAAACCTCTCAAGCCTCGGCCCCGAGGCCTGCTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 124-262, gnl|bosTau2|chr25 (9002924-9003062) | |
| 124-262, gnl|Hg17|chr16 (10748500-10748638) | |
| 124-262, gnl|Mm7|chr16 (10091147-10091285) | |
| 451-607, gnl|bosTau2|chr25 (9012500-9012656) | |
| 451-607, gnl|canFam2|chr6 (34951491-34951318) | |
| 451-607, gnl|dasNov1|scaffold_13133 (4786-4957) | |
| 451-607, gnl|echTel1|scaffold_244915 (3747-3577) | |
| 451-607, gnl|fr1|chrUn (162441989-162442147) | |
| 451-607, gnl|galGal2|chr14 (11296022-11295850) | |
| 451-607, gnl|hg17|chr16 (10759220-10759391) | |
| 451-607, gnl|Hg17|chr16 (10759230-10759386) | |
| 451-607, gnl|loxAfr1|scaffold_86839 (4141-4309) | |
| 451-607, gnl|mm7|chr16 (10098499-10098671) | |
| 451-607, gnl|Mm7|chr16 (10098510-10098666) | |
| 451-607, gnl|monDom2|scaffold_17 (33925046-33924875) | |
| 451-607, gnl|oryCun1|scaffold_193145 (4667-4836) | |
| 451-607, gnl|panTro1|chr18 (11085101-11085271) | |
| 451-607, gnl|rheMac2|chr20 (10825869-10826040) | |
| 451-607, gnl|rn3|chr10 (5209161-5208989) | |
| 451-607, gnl|tetNig1|chrUn_random (40101118-40101279) | |
| 715-820, gnl|bosTau2|chr25 (9014605-9014710) | |
| 715-820, gnl|canFam2|chr6 (34948319-34948206) | |
| 715-820, gnl|dasNov1|scaffold_13133 (8341-8454) | |
| 715-820, gnl|echTel1|scaffold_244915 (698-586) | |
| 715-820, gnl|fr1|chrUn (162443709-162443814) | |
| 715-820, gnl|galGal2|chr14 (11294993-11294886) | |
| 715-820, gnl|hg17|chr16 (10763113-10763229) | |
| 715-820, gnl|Hg17|chr16 (10763112-10763217) | |
| 715-820, gnl|loxAfr1|scaffold_9319 (43874-43761) | |
| 715-820, gnl|mm7|chr16 (10099112-10099223) | |
| 715-820, gnl|Mm7|chr16 (10099111-10099216) | |
| 715-820, gnl|monDom2|scaffold_17 (33920170-33920054) | |
| 715-820, gnl|oryCun1|scaffold_193145 (7558-7671) | |
| 715-820, gnl|rheMac2|chr20 (10829767-10829883) | |
| 715-820, gnl|rn3|chr10 (5208529-5208411) | |
| 715-820, gnl|tetNig1|chrUn_random (40102823-40102920) | |
| 715-820, gnl|xenTro1|scaffold_769 (136905-137012) | |
| 899-1186, gnl|bosTau2|chr25 (9018863-9019176) | |
| 899-1186, gnl|Hg17|chr16 (10770400-10770725) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-262, gnl|bosTau2|chr25 (9002924-9003062) | |
| 124-262, gnl|Hg17|chr16 (10748500-10748638) | |
| 124-262, gnl|Mm7|chr16 (10091147-10091285) | |
| 451-607, gnl|bosTau2|chr25 (9012500-9012656) | |
| 451-607, gnl|canFam2|chr6 (34951491-34951318) | |
| 451-607, gnl|dasNov1|scaffold_13133 (4786-4957) | |
| 451-607, gnl|echTel1|scaffold_244915 (3747-3577) | |
| 451-607, gnl|fr1|chrUn (162441989-162442147) | |
| 451-607, gnl|galGal2|chr14 (11296022-11295850) | |
| 451-607, gnl|hg17|chr16 (10759220-10759391) | |
| 451-607, gnl|Hg17|chr16 (10759230-10759386) | |
| 451-607, gnl|loxAfr1|scaffold_86839 (4141-4309) | |
| 451-607, gnl|mm7|chr16 (10098499-10098671) | |
| 451-607, gnl|Mm7|chr16 (10098510-10098666) | |
| 451-607, gnl|monDom2|scaffold_17 (33925046-33924875) | |
| 451-607, gnl|oryCun1|scaffold_193145 (4667-4836) | |
| 451-607, gnl|panTro1|chr18 (11085101-11085271) | |
| 451-607, gnl|rheMac2|chr20 (10825869-10826040) | |
| 451-607, gnl|rn3|chr10 (5209161-5208989) | |
| 451-607, gnl|tetNig1|chrUn_random (40101118-40101279) | |
| 715-820, gnl|bosTau2|chr25 (9014605-9014710) | |
| 715-820, gnl|canFam2|chr6 (34948319-34948206) | |
| 715-820, gnl|dasNov1|scaffold_13133 (8341-8454) | |
| 715-820, gnl|echTel1|scaffold_244915 (698-586) | |
| 715-820, gnl|fr1|chrUn (162443709-162443814) | |
| 715-820, gnl|galGal2|chr14 (11294993-11294886) | |
| 715-820, gnl|hg17|chr16 (10763113-10763229) | |
| 715-820, gnl|Hg17|chr16 (10763112-10763217) | |
| 715-820, gnl|loxAfr1|scaffold_9319 (43874-43761) | |
| 715-820, gnl|mm7|chr16 (10099112-10099223) | |
| 715-820, gnl|Mm7|chr16 (10099111-10099216) | |
| 715-820, gnl|monDom2|scaffold_17 (33920170-33920054) | |
| 715-820, gnl|oryCun1|scaffold_193145 (7558-7671) | |
| 715-820, gnl|rheMac2|chr20 (10829767-10829883) | |
| 715-820, gnl|rn3|chr10 (5208529-5208411) | |
| 715-820, gnl|tetNig1|chrUn_random (40102823-40102920) | |
| 715-820, gnl|xenTro1|scaffold_769 (136905-137012) | |
| 899-1186, gnl|bosTau2|chr25 (9018863-9019176) | |
| 899-1186, gnl|Hg17|chr16 (10770400-10770725) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mcp (0.170648) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ste (0.135208) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ste (0.135208) |