Ss1.1-Liv1-LVR010060F10.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTCTCGGGACGGTAGAGGCCGTGTAGCGTCGCCGTTACTCTGAGGAGAAAACAGTCG GTAGAGGAGTGCAAAAATGCAGAGCAATAAAACTTTTAACTTGGAGAAGCAAAACCACAC TCCAAGGAAACATCATCAGCATCACCATCAGCAGCACCACCAGCAGCAACAGCAGCAGCC ACCGCCTCCACCAATACCTGCAAACGGGCAGCAAGCCAGCAGCCAGAATGAAGGCTTAAC TATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAACGTAGCCGGCT CTTTGTGGGCAATCTTCCTCCTGACATCACTGAGGAGGAAATGAGGAAACTATTTGAGAA ATACGGGAAGGCAGGCGAAGTCTTCATTCACAAGGATAAAGGCTTTGGCTTTATCCGCTT GGAAACACGAACCCTAGCGGAGATTGCCAAAGTGGAACTGGACAACATGCCACTCCGTGG AAAGCAGCTGCGTGTGCGCTTTGCCTGCCATAGTGCATCCCTTACGGTCCGAAACCTTCC TCAGTATGTGTCCAACGAACTGCTGGAGGAAGCCTTTTCTGTGTTCGGCCAGGTAGAGAG GGCTGTAGTCATCGTGGATGATCGAGGAAGGCCCTCAGGGAAAGGCATTGTCGAGTTTTC AGGGAAGCCAGCTGCTCGCAAAGCTCTGGACAGATGCAGTGAAGGCTCCTTCCTGCTAAC CACATTTCCTAGGCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGATGAAGAGGGACT TCCAGAGAAGTTGGTTATAAAGAACCAGCAATTTCACAAGGAGCGAGAGCAGCCACCCAG GTTTGCACAGCCTGGCTCTTTTGAGTATGAGTATGCTATGCGCTGGAAGGCACTTATTGA GATGGAGAAGCAGCAGCAGGACCAAGTGGACCGAAACATCAAGGAAGCCCGTGAGAAGCT GGAGATGGAGATGGAGGCTGCTCGCCATGAACATCAGGTCATGCTAATGAGGCAGGATTT GATGAGGCGTCAAGAAGAACTTCGGAGGATGGAAGAGCTGCATAACCAAGAAGTGCAAAA ACGAAAGCAGTTGGAGCTCAGACAGGAGGAGGAACGCAGGCGCCGTGAGGAAGAGATGCG GCGGCAGCAAGAAGAAATGATGCGGCGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGA TGCGAGAGAGCAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATAAA CAACAGAGGCGCCATGCCCCCTGCTCCTGTGCCAGCTGGTACACCAGCTCCTCCAGGACC TGCCACTATGATGCCAGATGGAACCTTGGGATTGACCCCACCAACAACTGAACGCTTTGG CCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTGGAACCCCTCCAGCATTCAACCG TGCAGCTCCTGGAGCTGAATTTGCTCCAAACAAACGTCGCCGATACTAATAAAATTGCAG TGTCTAGTTTCCCAAAACCCTTAAAAGAAGGACCCTTTTTGGACTAGCTGAATTCTACCC TGGAAAGTGTTAGGGATTCCTCCAATAGTTAGGTCTTCCCTGCCTGTACTACTCCAAGGA GTATGCTGGAGGCAGAGGGTAAGGGAGGGGCGGTATTGAACAAATCAGTTCTGTGTGGTA TATCCTTTAACTAACCAATTCTGTGTGGTGCATTCCTGAAGTCTAGTGTGATTGTTGAGA GCCTGGGAGAGTCAGGGAGCCCTGGTAAAATGGATCCAGTTAGAGCCCCCATTAATCATT CCACTCTGTCCATCCTGTTCTATTTGCTTTCTTGTACCCCTCCCAGCCTCCACCCCAGAG ACACTGCCACATATACCACAAAAACCAAACATCCCCCAATGACCTTGGCCCCATTGCTCC GTTCACTCTGAGGTGGGAATTCAGGCAAATGTCCGCAGAGGTCACAGACAACATAATGTA CGGTTCTGTTATATCCCATATATTACCCCTTCATGTCCTAAGGAAGACATTTTCTCTTAG AGATTTTCATTTAGTATATCTTTAACAAAATCTTGTGTTGACTTGCCTCCATCTTTTTCT TGGGTAAGGACAACCCAAGAATGGCCCTTCCTTTTGTGTCTATGATGTTGCTGTACACAG CTTTTCTCGATAGGCCTAGTACAATCTTGAGAACAGGGTTGCTGTATGCGGAAGGTTGGA CAGTAGCTCTTAGCTTTGCCTATTTTAGGTAGTTATGCTGTGCATTTTTTTATTGGTGTA CCATGTTTGATTTGTCCCTGATAACCTTTGGAGTTTTTCTGAGAAATGGAGAAGTAATGC AACATCAACTTATTAAAATACATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTCTCGGGACGGTAGAGGCCGTGTAGCGTCGCCGTTACTCTGAGGAGAAAACAGTCG GTAGAGGAGTGCAAAAATGCAGAGCAATAAAACTTTTAACTTGGAGAAGCAAAACCACAC TCCAAGGAAACATCATCAGCATCACCATCAGCAGCACCACCAGCAGCAACAGCAGCAGCC ACCGCCTCCACCAATACCTGCAAACGGGCAGCAAGCCAGCAGCCAGAATGAAGGCTTAAC TATTGACCTGAAGAATTTTAGGAAACCAGGAGAGAAGACCTTCACCCAACGTAGCCGGCT CTTTGTGGGCAATCTTCCTCCTGACATCACTGAGGAGGAAATGAGGAAACTATTTGAGAA ATACGGGAAGGCAGGCGAAGTCTTCATTCACAAGGATAAAGGCTTTGGCTTTATCCGCTT GGAAACACGAACCCTAGCGGAGATTGCCAAAGTGGAACTGGACAACATGCCACTCCGTGG AAAGCAGCTGCGTGTGCGCTTTGCCTGCCATAGTGCATCCCTTACGGTCCGAAACCTTCC TCAGTATGTGTCCAACGAACTGCTGGAGGAAGCCTTTTCTGTGTTCGGCCAGGTAGAGAG GGCTGTAGTCATCGTGGATGATCGAGGAAGGCCCTCAGGGAAAGGCATTGTCGAGTTTTC AGGGAAGCCAGCTGCTCGCAAAGCTCTGGACAGATGCAGTGAAGGCTCCTTCCTGCTAAC CACATTTCCTAGGCCTGTGACTGTGGAGCCCATGGACCAGTTAGATGATGAAGAGGGACT TCCAGAGAAGTTGGTTATAAAGAACCAGCAATTTCACAAGGAGCGAGAGCAGCCACCCAG GTTTGCACAGCCTGGCTCTTTTGAGTATGAGTATGCTATGCGCTGGAAGGCACTTATTGA GATGGAGAAGCAGCAGCAGGACCAAGTGGACCGAAACATCAAGGAAGCCCGTGAGAAGCT GGAGATGGAGATGGAGGCTGCTCGCCATGAACATCAGGTCATGCTAATGAGGCAGGATTT GATGAGGCGTCAAGAAGAACTTCGGAGGATGGAAGAGCTGCATAACCAAGAAGTGCAAAA ACGAAAGCAGTTGGAGCTCAGACAGGAGGAGGAACGCAGGCGCCGTGAGGAAGAGATGCG GCGGCAGCAAGAAGAAATGATGCGGCGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGA TGCGAGAGAGCAGGAGATACGGATGGGCCAGATGGCTATGGGAGGTGCTATGGGCATAAA CAACAGAGGCGCCATGCCCCCTGCTCCTGTGCCAGCTGGTACACCAGCTCCTCCAGGACC TGCCACTATGATGCCAGATGGAACCTTGGGATTGACCCCACCAACAACTGAACGCTTTGG CCAAGCTGCTACAATGGAAGGAATTGGGGCAATTGGTGGAACCCCTCCAGCATTCAACCG TGCAGCTCCTGGAGCTGAATTTGCTCCAAACAAACGTCGCCGATACTAATAAAATTGCAG TGTCTAGTTTCCCAAAACCCTTAAAAGAAGGACCCTTTTTGGACTAGCTGAATTCTACCC TGGAAAGTGTTAGGGATTCCTCCAATAGTTAGGTCTTCCCTGCCTGTACTACTCCAAGGA GTATGCTGGAGGCAGAGGGTAAGGGAGGGGCGGTATTGAACAAATCAGTTCTGTGTGGTA TATCCTTTAACTAACCAATTCTGTGTGGTGCATTCCTGAAGTCTAGTGTGATTGTTGAGA GCCTGGGAGAGTCAGGGAGCCCTGGTAAAATGGATCCAGTTAGAGCCCCCATTAATCATT CCACTCTGTCCATCCTGTTCTATTTGCTTTCTTGTACCCCTCCCAGCCTCCACCCCAGAG ACACTGCCACATATACCACAAAAACCAAACATCCCCCAATGACCTTGGCCCCATTGCTCC GTTCACTCTGAGGTGGGAATTCAGGCAAATGTCCGCAGAGGTCACAGACAACATAATGTA CGGTTCTGTTATATCCCATATATTACCCCTTCATGTCCTAAGGAAGACATTTTCTCTTAG AGATTTTCATTTAGTATATCTTTAACAAAATCTTGTGTTGACTTGCCTCCATCTTTTTCT TGGGTAAGGACAACCCAAGAATGGCCCTTCCTTTTGTGTCTATGATGTTGCTGTACACAG CTTTTCTCGATAGGCCTAGTACAATCTTGAGAACAGGGTTGCTGTATGCGGAAGGTTGGA CAGTAGCTCTTAGCTTTGCCTATTTTAGGTAGTTATGCTGTGCATTTTTTTATTGGTGTA CCATGTTTGATTTGTCCCTGATAACCTTTGGAGTTTTTCTGAGAAATGGAGAAGTAATGC AACATCAACTTATTAAAATACATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1169-1368, - strand, RNAz p=0.858976 | |
| 2009-2124, + strand, RNAz p=0.554355 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1169-1368, - strand, RNAz p=0.858976 | |
| 2009-2124, + strand, RNAz p=0.554355 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_007363, + |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 69-227, gnl|bosTau2|chrX (22088872-22089030) | |
| 69-227, gnl|Hg17|chrX (70293501-70293662) | |
| 69-227, gnl|Mm7|chrX (96764565-96764732) | |
| 228-425, gnl|bosTau2|chrX (22090056-22090253) | |
| 228-425, gnl|Hg17|chrX (70294650-70294847) | |
| 228-425, gnl|Mm7|chrX (96766842-96767039) | |
| 429-723, gnl|bosTau2|chr12 (20563598-20563304) | |
| 429-723, gnl|canFam2|chr25 (21280227-21279994) | |
| 429-723, gnl|danRer3|chr14 (66827023-66826793) | |
| 429-723, gnl|dasNov1|scaffold_71138 (5092-4859) | |
| 429-723, gnl|echTel1|scaffold_101685 (2809-3042) | |
| 429-723, gnl|fr1|chrUn (201813649-201813328) | |
| 429-723, gnl|galGal2|chr1 (171121409-171121176) | |
| 429-723, gnl|hg17|chr13 (19244378-19244611) | |
| 429-723, gnl|Hg17|chr13 (19244676-19244382) | |
| 429-723, gnl|loxAfr1|scaffold_2523 (63876-64109) | |
| 429-723, gnl|mm7|chr14 (51639420-51639653) | |
| 429-723, gnl|Mm7|chr14 (51639718-51639424) | |
| 429-723, gnl|monDom2|scaffold_15 (27347129-27347362) | |
| 429-723, gnl|oryCun1|scaffold_87605 (921-1154) | |
| 429-723, gnl|panTro1|chr14 (18131512-18131745) | |
| 429-723, gnl|rheMac2|chr17 (1679237-1679004) | |
| 429-723, gnl|rn3|chr15 (35787062-35787295) | |
| 429-723, gnl|tetNig1|chr3 (3977338-3977647) | |
| 429-723, gnl|xenTro1|scaffold_327 (793708-793941) | |
| 820-1014, gnl|bosTau2|chr12 (20550665-20550471) | |
| 820-1014, gnl|canFam2|chr25 (21303681-21303502) | |
| 820-1014, gnl|danRer3|chr14 (66827521-66827342) | |
| 820-1014, gnl|dasNov1|scaffold_29783 (1264-1443) | |
| 820-1014, gnl|echTel1|scaffold_308502 (406522-406672) | |
| 820-1014, gnl|fr1|chrUn (201814241-201814062) | |
| 820-1014, gnl|galGal2|chr1 (171125773-171125594) | |
| 820-1014, gnl|hg17|chr13 (18699386-18699553) | |
| 820-1014, gnl|Hg17|chr13 (19223607-19223413) | |
| 820-1014, gnl|loxAfr1|scaffold_90140 (2931-3110) | |
| 820-1014, gnl|mm7|chr14 (51629551-51629730) | |
| 820-1014, gnl|Mm7|chr14 (51629749-51629555) | |
| 820-1014, gnl|monDom2|scaffold_15 (27338289-27338468) | |
| 820-1014, gnl|oryCun1|scaffold_90809 (7697-7876) | |
| 820-1014, gnl|panTro1|chr14 (17600527-17600706) | |
| 820-1014, gnl|rheMac2|chr17 (1699481-1699302) | |
| 820-1014, gnl|rn3|chr15 (35778612-35778791) | |
| 820-1014, gnl|tetNig1|chr3 (3976783-3976962) | |
| 820-1014, gnl|xenTro1|scaffold_327 (788810-788989) | |
| 1169-1436, gnl|bosTau2|chr3 (66569676-66569409) | |
| 1169-1436, gnl|Hg17|chr16 (68348259-68347992) | |
| 1169-1436, gnl|Mm7|chrX (75920711-75920444) | |
| 1851-2360, gnl|bosTau2|chr10 (32486047-32486544) | |
| 1851-2360, gnl|Hg17|chrX (70303514-70304022) | |
| 1851-2360, gnl|Mm7|chrX (75920030-75919545) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-227, gnl|bosTau2|chrX (22088872-22089030) | |
| 69-227, gnl|Hg17|chrX (70293501-70293662) | |
| 69-227, gnl|Mm7|chrX (96764565-96764732) | |
| 228-425, gnl|bosTau2|chrX (22090056-22090253) | |
| 228-425, gnl|Hg17|chrX (70294650-70294847) | |
| 228-425, gnl|Mm7|chrX (96766842-96767039) | |
| 429-723, gnl|bosTau2|chr12 (20563598-20563304) | |
| 429-723, gnl|canFam2|chr25 (21280227-21279994) | |
| 429-723, gnl|danRer3|chr14 (66827023-66826793) | |
| 429-723, gnl|dasNov1|scaffold_71138 (5092-4859) | |
| 429-723, gnl|echTel1|scaffold_101685 (2809-3042) | |
| 429-723, gnl|fr1|chrUn (201813649-201813328) | |
| 429-723, gnl|galGal2|chr1 (171121409-171121176) | |
| 429-723, gnl|hg17|chr13 (19244378-19244611) | |
| 429-723, gnl|Hg17|chr13 (19244676-19244382) | |
| 429-723, gnl|loxAfr1|scaffold_2523 (63876-64109) | |
| 429-723, gnl|mm7|chr14 (51639420-51639653) | |
| 429-723, gnl|Mm7|chr14 (51639718-51639424) | |
| 429-723, gnl|monDom2|scaffold_15 (27347129-27347362) | |
| 429-723, gnl|oryCun1|scaffold_87605 (921-1154) | |
| 429-723, gnl|panTro1|chr14 (18131512-18131745) | |
| 429-723, gnl|rheMac2|chr17 (1679237-1679004) | |
| 429-723, gnl|rn3|chr15 (35787062-35787295) | |
| 429-723, gnl|tetNig1|chr3 (3977338-3977647) | |
| 429-723, gnl|xenTro1|scaffold_327 (793708-793941) | |
| 820-1014, gnl|bosTau2|chr12 (20550665-20550471) | |
| 820-1014, gnl|canFam2|chr25 (21303681-21303502) | |
| 820-1014, gnl|danRer3|chr14 (66827521-66827342) | |
| 820-1014, gnl|dasNov1|scaffold_29783 (1264-1443) | |
| 820-1014, gnl|echTel1|scaffold_308502 (406522-406672) | |
| 820-1014, gnl|fr1|chrUn (201814241-201814062) | |
| 820-1014, gnl|galGal2|chr1 (171125773-171125594) | |
| 820-1014, gnl|hg17|chr13 (18699386-18699553) | |
| 820-1014, gnl|Hg17|chr13 (19223607-19223413) | |
| 820-1014, gnl|loxAfr1|scaffold_90140 (2931-3110) | |
| 820-1014, gnl|mm7|chr14 (51629551-51629730) | |
| 820-1014, gnl|Mm7|chr14 (51629749-51629555) | |
| 820-1014, gnl|monDom2|scaffold_15 (27338289-27338468) | |
| 820-1014, gnl|oryCun1|scaffold_90809 (7697-7876) | |
| 820-1014, gnl|panTro1|chr14 (17600527-17600706) | |
| 820-1014, gnl|rheMac2|chr17 (1699481-1699302) | |
| 820-1014, gnl|rn3|chr15 (35778612-35778791) | |
| 820-1014, gnl|tetNig1|chr3 (3976783-3976962) | |
| 820-1014, gnl|xenTro1|scaffold_327 (788810-788989) | |
| 1169-1436, gnl|bosTau2|chr3 (66569676-66569409) | |
| 1169-1436, gnl|Hg17|chr16 (68348259-68347992) | |
| 1169-1436, gnl|Mm7|chrX (75920711-75920444) | |
| 1851-2360, gnl|bosTau2|chr10 (32486047-32486544) | |
| 1851-2360, gnl|Hg17|chrX (70303514-70304022) | |
| 1851-2360, gnl|Mm7|chrX (75920030-75919545) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| thg (1.3947) | |
| ova (1.16219) | |
| fty (1.05504) | |
| eru (0.720288) | |
| rec (0.692281) | |
| cly (0.603209) | |
| ebs (0.591506) | |
| spl (0.572738) | |
| sag (0.548145) | |
| nca (0.547495) | |
| fce (0.543183) | |
| gul (0.532765) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| spc (0.453463) | |
| pla (0.401016) | |
| elu (0.385356) | |
| sug (0.381874) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| med (0.348756) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nje (0.33184) | |
| mga (0.32041) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| eje (0.296501) | |
| fat (0.294855) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| ese (0.253004) | |
| tra (0.246184) | |
| eep (0.245128) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| ret (0.128733) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.3947) | |
| ova (1.16219) | |
| fty (1.05504) | |
| eru (0.720288) | |
| rec (0.692281) | |
| cly (0.603209) | |
| ebs (0.591506) | |
| spl (0.572738) | |
| sag (0.548145) | |
| nca (0.547495) | |
| fce (0.543183) | |
| gul (0.532765) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| spc (0.453463) | |
| pla (0.401016) | |
| elu (0.385356) | |
| sug (0.381874) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| med (0.348756) | |
| ecc (0.345105) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nje (0.33184) | |
| mga (0.32041) | |
| cty (0.31224) | |
| tbr (0.308356) | |
| eje (0.296501) | |
| fat (0.294855) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| ese (0.253004) | |
| tra (0.246184) | |
| eep (0.245128) | |
| clu (0.239292) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nco (0.161734) | |
| lun (0.150489) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| ret (0.128733) | |
| nbm (0.0993246) | |
| jej (0.0989218) |