Ss1.1-Liv1-LVR010061A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTGGATCGGGACGAGGCAGCTGCAGACACCAGACATGGCGGGGGCCGAATTTGAGTC GCTGGAGCAGGGCTTGGAGAAGCATCTGCCACTCGCAGACCTGCGGGAGGTCAAACGCAT GCCAGGCAACTGTCTCCTCCTCTTCCAACTGGAGGCAAAGGGCAGCAGGCAGTTTGGATC GGGACGAGGCAGCTGCAGACACCAGACATGGCGGGGGCCGAATTTGAGTCGCTGGAGCAG TGCTTGGAGAAGCATCTGCCACTCGCAGACCTGCGGGAGGTCAAACGCATCCTCTATGGC AAGGAGACCAGGGAGCTTAACCTGCCCAGAGGTGCTTTTGAAGCCGCCACCAAGGGGGAC TTCGAGCTGCTGGGCTGTGCCTTTGAGGCCGTAGAGGAGCAGCAGAGGCGGCCCCGGACT GTGCGTGTGGGGCTTGTTCAGAACAGAACCCCCCTCCCCGCGGACACTCCTGTGGTGAAA CAGGTCACTGCCCTTCACAGACGTATCGCGGCCATTGCAGAGGTGGCTGCCATGTGTGGA GTCAACATCATCTGTTTCCAGGAGGCGTGGACCATGCCCTTTGCTTTCTGTACGAGAGAG AAGCTCCCGTGGACAGAATTTGCCGAGTCTGCAGAGGATGGACCAACCACCAGATTCTGT CAAGAGCTGTCGCGGAAGCATGGCATGGTAGTGGTGTCCCCCATCCTGGAGCGTGACGTG GAGCACGGGGACGTCTTGTGGAACACAGCCGTGGTGATCTCCAACTCGGGAAAGGTCCTG GGGAAGACAAGGAAAAACCACATCCCCAGAGTGGGTGATTTCAACGAGTCCACTTACTAC ATGGAGGGAAACCTGGGCCACCCCGTGTTCCAGACCCCATTCGGGAGGATCGCCGTAAAC ATCTGCTATGGGCGGCACCACCCCCTCAACTGGCTCATGTTCAGCATCAACGGGGCCGAG ATCATCTTCAACCCCTCGGCCACCATTGGGGTGCTCAGTGAGTCCCTGTGGCCAATCGAG GCCAGAAATGCAGCCATTGCCAATCACTGCTTCACCTGCGCCATCAACCGTGTGGGTGAG GAGCGCTTCCCCAATGAGTTCACCTCTGGAGATGGGAAGAAAGCTCACCAGGACTTCGGC TACTTTTATGGCTCGAGCTACGTGGCAGCCCCTGACGGCAGCCGCACCCCCGGGCTCCCG CGTAACCGGGATGGGCTGCTGGTTGCTGAGCTCGATCTCAACCTCTGCCGGCAGACAAGT GACATCTGGGGCTTCAAGATGACGGGCAGATACGAGATGTACGCTCAGGAGCTTGCCGAA GCTGTCAAGCCCAGCTACAGCCCCAATATCGTGAAAGAGTAGCAGGCTCAGCCCCTGCCC ACCAAGGAGGGCACCTCTGCCCACAGCAGATCAGCAAGTACTCCAGGCCCTGCATGTCCA CATTCTCCCAGCAGATGCCTGATAATGCTGTGGTCCAGAGTGGTTTAAAAGTGCCTGGAT GGGGAGGGTTGAATGAGAAGCGATGCTCCAATAGGTACAAGATTTCCTTCTGGGGGGGAT GAAAATGTCTGGGGACTGGATAGAGGTGATGGTTTCACAACATTGTGAATGGGCCAAATC CACTGAATTGTTCACTTTAAAATGGTTAAAGGACTTCCCTGGTGGCTCAGGTTAAAGATC TGGCATTGTCACTGTGGTGGCTCAGGTCACTGCTGTGGCATGGGTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTGGATCGGGACGAGGCAGCTGCAGACACCAGACATGGCGGGGGCCGAATTTGAGTC GCTGGAGCAGGGCTTGGAGAAGCATCTGCCACTCGCAGACCTGCGGGAGGTCAAACGCAT GCCAGGCAACTGTCTCCTCCTCTTCCAACTGGAGGCAAAGGGCAGCAGGCAGTTTGGATC GGGACGAGGCAGCTGCAGACACCAGACATGGCGGGGGCCGAATTTGAGTCGCTGGAGCAG TGCTTGGAGAAGCATCTGCCACTCGCAGACCTGCGGGAGGTCAAACGCATCCTCTATGGC AAGGAGACCAGGGAGCTTAACCTGCCCAGAGGTGCTTTTGAAGCCGCCACCAAGGGGGAC TTCGAGCTGCTGGGCTGTGCCTTTGAGGCCGTAGAGGAGCAGCAGAGGCGGCCCCGGACT GTGCGTGTGGGGCTTGTTCAGAACAGAACCCCCCTCCCCGCGGACACTCCTGTGGTGAAA CAGGTCACTGCCCTTCACAGACGTATCGCGGCCATTGCAGAGGTGGCTGCCATGTGTGGA GTCAACATCATCTGTTTCCAGGAGGCGTGGACCATGCCCTTTGCTTTCTGTACGAGAGAG AAGCTCCCGTGGACAGAATTTGCCGAGTCTGCAGAGGATGGACCAACCACCAGATTCTGT CAAGAGCTGTCGCGGAAGCATGGCATGGTAGTGGTGTCCCCCATCCTGGAGCGTGACGTG GAGCACGGGGACGTCTTGTGGAACACAGCCGTGGTGATCTCCAACTCGGGAAAGGTCCTG GGGAAGACAAGGAAAAACCACATCCCCAGAGTGGGTGATTTCAACGAGTCCACTTACTAC ATGGAGGGAAACCTGGGCCACCCCGTGTTCCAGACCCCATTCGGGAGGATCGCCGTAAAC ATCTGCTATGGGCGGCACCACCCCCTCAACTGGCTCATGTTCAGCATCAACGGGGCCGAG ATCATCTTCAACCCCTCGGCCACCATTGGGGTGCTCAGTGAGTCCCTGTGGCCAATCGAG GCCAGAAATGCAGCCATTGCCAATCACTGCTTCACCTGCGCCATCAACCGTGTGGGTGAG GAGCGCTTCCCCAATGAGTTCACCTCTGGAGATGGGAAGAAAGCTCACCAGGACTTCGGC TACTTTTATGGCTCGAGCTACGTGGCAGCCCCTGACGGCAGCCGCACCCCCGGGCTCCCG CGTAACCGGGATGGGCTGCTGGTTGCTGAGCTCGATCTCAACCTCTGCCGGCAGACAAGT GACATCTGGGGCTTCAAGATGACGGGCAGATACGAGATGTACGCTCAGGAGCTTGCCGAA GCTGTCAAGCCCAGCTACAGCCCCAATATCGTGAAAGAGTAGCAGGCTCAGCCCCTGCCC ACCAAGGAGGGCACCTCTGCCCACAGCAGATCAGCAAGTACTCCAGGCCCTGCATGTCCA CATTCTCCCAGCAGATGCCTGATAATGCTGTGGTCCAGAGTGGTTTAAAAGTGCCTGGAT GGGGAGGGTTGAATGAGAAGCGATGCTCCAATAGGTACAAGATTTCCTTCTGGGGGGGAT GAAAATGTCTGGGGACTGGATAGAGGTGATGGTTTCACAACATTGTGAATGGGCCAAATC CACTGAATTGTTCACTTTAAAATGGTTAAAGGACTTCCCTGGTGGCTCAGGTTAAAGATC TGGCATTGTCACTGTGGTGGCTCAGGTCACTGCTGTGGCATGGGTTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr17 (43752699-43752813) | |
| 1-118, gnl|Hg17|chr22 (23215888-23216006) | |
| 1-118, gnl|Mm7|chr10 (75062667-75062787) | |
| 310-485, gnl|bosTau2|chr17 (43758500-43758675) | |
| 310-485, gnl|canFam2|chr26 (31267041-31267270) | |
| 310-485, gnl|danRer3|chrNA (178744137-178744335) | |
| 310-485, gnl|dasNov1|scaffold_3169 (3228-2997) | |
| 310-485, gnl|echTel1|scaffold_115263 (532-330) | |
| 310-485, gnl|fr1|chrUn (56370015-56369803) | |
| 310-485, gnl|galGal2|chr15 (8394349-8394136) | |
| 310-485, gnl|hg17|chr22 (23220601-23220833) | |
| 310-485, gnl|Hg17|chr22 (23220627-23220802) | |
| 310-485, gnl|mm7|chr10 (75068383-75068620) | |
| 310-485, gnl|Mm7|chr10 (75068416-75068591) | |
| 310-485, gnl|panTro1|chr23 (23323823-23324055) | |
| 310-485, gnl|rheMac2|chr10 (67916211-67916441) | |
| 310-485, gnl|rn3|chr20 (13737666-13737416) | |
| 310-485, gnl|tetNig1|chr12 (11542495-11542283) | |
| 310-485, gnl|xenTro1|scaffold_169 (590413-590607) | |
| 827-998, gnl|bosTau2|chr17 (43770372-43770543) | |
| 827-998, gnl|canFam2|chr26 (31281789-31281995) | |
| 827-998, gnl|danRer3|chr8 (23592518-23592701) | |
| 827-998, gnl|dasNov1|scaffold_19664 (10593-10799) | |
| 827-998, gnl|fr1|chrUn (56368978-56368788) | |
| 827-998, gnl|galGal2|chr15 (8387349-8387136) | |
| 827-998, gnl|hg17|chr22 (23235692-23235898) | |
| 827-998, gnl|Hg17|chr22 (23235721-23235892) | |
| 827-998, gnl|loxAfr1|scaffold_54085 (10004-9799) | |
| 827-998, gnl|mm7|chr10 (75085581-75085788) | |
| 827-998, gnl|Mm7|chr10 (75085611-75085782) | |
| 827-998, gnl|monDom2|scaffold_475 (34696-34911) | |
| 827-998, gnl|oryCun1|scaffold_191755 (91243-91451) | |
| 827-998, gnl|panTro1|chr23 (23338975-23339181) | |
| 827-998, gnl|rheMac2|chr10 (67929351-67929557) | |
| 827-998, gnl|rn3|chr20 (13726002-13725783) | |
| 827-998, gnl|tetNig1|chr12 (11541498-11541310) | |
| 827-998, gnl|xenTro1|scaffold_169 (597891-598076) | |
| 1122-1281, gnl|bosTau2|chr17 (43777156-43777315) | |
| 1122-1281, gnl|canFam2|chr26 (31288663-31288838) | |
| 1122-1281, gnl|danRer3|chr8 (23599970-23600134) | |
| 1122-1281, gnl|echTel1|scaffold_175175 (1464-1641) | |
| 1122-1281, gnl|fr1|chrUn (56368205-56368043) | |
| 1122-1281, gnl|galGal2|chr15 (8383763-8383596) | |
| 1122-1281, gnl|hg17|chr22 (23244137-23244312) | |
| 1122-1281, gnl|Hg17|chr22 (23244139-23244298) | |
| 1122-1281, gnl|mm7|chr10 (75093704-75093879) | |
| 1122-1281, gnl|Mm7|chr10 (75093706-75093865) | |
| 1122-1281, gnl|monDom2|scaffold_475 (35251-35426) | |
| 1122-1281, gnl|oryCun1|scaffold_202749 (39990-39815) | |
| 1122-1281, gnl|panTro1|chr23 (23283942-23284117) | |
| 1122-1281, gnl|rheMac2|chr10 (67938393-67938568) | |
| 1122-1281, gnl|rn3|chr20 (13718294-13718119) | |
| 1122-1281, gnl|tetNig1|chr12 (11540930-11540770) | |
| 1122-1281, gnl|xenTro1|scaffold_169 (598821-598988) | |
| 1501-1649, gnl|bosTau2|chr15 (17240269-17240121) | |
| 1501-1649, gnl|Hg17|chr8 (96723330-96723181) | |
| 1501-1649, gnl|Mm7|chr4 (10333598-10333740) | |
| 1503-1648, gnl|bosTau2|chr10 (54525310-54525456) | |
| 1503-1648, gnl|Hg17|chr14 (68034166-68034027) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr17 (43752699-43752813) | |
| 1-118, gnl|Hg17|chr22 (23215888-23216006) | |
| 1-118, gnl|Mm7|chr10 (75062667-75062787) | |
| 310-485, gnl|bosTau2|chr17 (43758500-43758675) | |
| 310-485, gnl|canFam2|chr26 (31267041-31267270) | |
| 310-485, gnl|danRer3|chrNA (178744137-178744335) | |
| 310-485, gnl|dasNov1|scaffold_3169 (3228-2997) | |
| 310-485, gnl|echTel1|scaffold_115263 (532-330) | |
| 310-485, gnl|fr1|chrUn (56370015-56369803) | |
| 310-485, gnl|galGal2|chr15 (8394349-8394136) | |
| 310-485, gnl|hg17|chr22 (23220601-23220833) | |
| 310-485, gnl|Hg17|chr22 (23220627-23220802) | |
| 310-485, gnl|mm7|chr10 (75068383-75068620) | |
| 310-485, gnl|Mm7|chr10 (75068416-75068591) | |
| 310-485, gnl|panTro1|chr23 (23323823-23324055) | |
| 310-485, gnl|rheMac2|chr10 (67916211-67916441) | |
| 310-485, gnl|rn3|chr20 (13737666-13737416) | |
| 310-485, gnl|tetNig1|chr12 (11542495-11542283) | |
| 310-485, gnl|xenTro1|scaffold_169 (590413-590607) | |
| 827-998, gnl|bosTau2|chr17 (43770372-43770543) | |
| 827-998, gnl|canFam2|chr26 (31281789-31281995) | |
| 827-998, gnl|danRer3|chr8 (23592518-23592701) | |
| 827-998, gnl|dasNov1|scaffold_19664 (10593-10799) | |
| 827-998, gnl|fr1|chrUn (56368978-56368788) | |
| 827-998, gnl|galGal2|chr15 (8387349-8387136) | |
| 827-998, gnl|hg17|chr22 (23235692-23235898) | |
| 827-998, gnl|Hg17|chr22 (23235721-23235892) | |
| 827-998, gnl|loxAfr1|scaffold_54085 (10004-9799) | |
| 827-998, gnl|mm7|chr10 (75085581-75085788) | |
| 827-998, gnl|Mm7|chr10 (75085611-75085782) | |
| 827-998, gnl|monDom2|scaffold_475 (34696-34911) | |
| 827-998, gnl|oryCun1|scaffold_191755 (91243-91451) | |
| 827-998, gnl|panTro1|chr23 (23338975-23339181) | |
| 827-998, gnl|rheMac2|chr10 (67929351-67929557) | |
| 827-998, gnl|rn3|chr20 (13726002-13725783) | |
| 827-998, gnl|tetNig1|chr12 (11541498-11541310) | |
| 827-998, gnl|xenTro1|scaffold_169 (597891-598076) | |
| 1122-1281, gnl|bosTau2|chr17 (43777156-43777315) | |
| 1122-1281, gnl|canFam2|chr26 (31288663-31288838) | |
| 1122-1281, gnl|danRer3|chr8 (23599970-23600134) | |
| 1122-1281, gnl|echTel1|scaffold_175175 (1464-1641) | |
| 1122-1281, gnl|fr1|chrUn (56368205-56368043) | |
| 1122-1281, gnl|galGal2|chr15 (8383763-8383596) | |
| 1122-1281, gnl|hg17|chr22 (23244137-23244312) | |
| 1122-1281, gnl|Hg17|chr22 (23244139-23244298) | |
| 1122-1281, gnl|mm7|chr10 (75093704-75093879) | |
| 1122-1281, gnl|Mm7|chr10 (75093706-75093865) | |
| 1122-1281, gnl|monDom2|scaffold_475 (35251-35426) | |
| 1122-1281, gnl|oryCun1|scaffold_202749 (39990-39815) | |
| 1122-1281, gnl|panTro1|chr23 (23283942-23284117) | |
| 1122-1281, gnl|rheMac2|chr10 (67938393-67938568) | |
| 1122-1281, gnl|rn3|chr20 (13718294-13718119) | |
| 1122-1281, gnl|tetNig1|chr12 (11540930-11540770) | |
| 1122-1281, gnl|xenTro1|scaffold_169 (598821-598988) | |
| 1501-1649, gnl|bosTau2|chr15 (17240269-17240121) | |
| 1501-1649, gnl|Hg17|chr8 (96723330-96723181) | |
| 1501-1649, gnl|Mm7|chr4 (10333598-10333740) | |
| 1503-1648, gnl|bosTau2|chr10 (54525310-54525456) | |
| 1503-1648, gnl|Hg17|chr14 (68034166-68034027) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cki (1.81758) | |
| cli (0.91687) | |
| sme (0.305437) | |
| lun (0.150489) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (1.81758) | |
| cli (0.91687) | |
| sme (0.305437) | |
| lun (0.150489) |