Ss1.1-Liv1-LVR010061A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTTCCAAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGGGGTGGCAGTGACGACGGGA AGCAGAAAGCCAGCTGGGAAACCGGCTTCACCCAGACAGCGATTCTTGCCCGGCTGTCGG GGTGGCAGTGACGACGGGAAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCT GGATGGAGCCTTTCTCTGTCCTCTGTGATATTTCCAATTTTATATAATGCCTCACATCTC TGCTCCCCCGGGACCCCCTGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGAC CTCAACCCAGGATGTTGCGGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGG GCTCCCAGCTGGCCGTCATGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTGAGTGCCC TATTTGGCCGAGAGCAGGAGCCAACTTTTGACTATTCTCATCCCCATGATGTCTACAGTA ACCTCAGTCACCTGCATGGGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTC TGCCCTACTGTCCAGAACGATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCC CAGTGCCGTCGCTGGCAGAGATTATGGAGAGGAATCCCCGGGTGGAACCAGGGGGCCGGT ACCGCCCTGCAGGGTGTGAGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCC GAGAGCAGCACCTGCGCCTGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGC TTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGC TGCTGAATGTTGGGGTGCGGGAGGCCCTGCGTGATGAAGAATGGGACTGCCTGTTCTTGC ATGATGTGGACCTACTGCCAGAGAATGACCACAACCTGTATGTGTGCGACCCCCGAGGAC CCCGACATGTTGCTGTTGCCATGAACAAGTTTGGATACAGCCTCCCGTACCCCCAGTACT TTGGAGGGGTCTCGGCGCTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATG AATACTGGGGCTGGGGTGGTGAGGATGATGACATTGCTACCAGGGTACGCCTCGCTGGGA TGAAGATTTCTCGCCCCCCCACATCTGTGGGACACTATAAGATGGTGAAGCACCGAGGAG ATAAGGGCAACGAGGAAAATCCCCACAGATTTGACCTCCTGGTCCGTACTCAGAATTCCT GGACACAAGATGGGATGAACTCACTGACATACCGATTGCTGGCTCGAGAGCTGGGCCCTC TCTATACGAACATCACAGCAGACATTGGAACTGACCCTCGGGGTCCCCGGACTCCCACTG GTCCCCGTTACCCACCTGGCTCCTCCCAGGCCTTCCGTCAAGAGATGCTGCAGCGCCGGC CCCCAGCCAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCACGGTTCACAAT GACTCCTCTTTAATCATGAAAGTGTATCTTGCCCACCTTAATCACAAAACCGAATCAGAG GGGTTGTATTCTCCCCACCCTCAGCTCCTCACTGCTTTTAGAGGGATGTGGGGGGACTAA CTCCAGTACTGTGCTGGGGGCAGGGGCCTCTCCTCACTGCTGGACTGGAGCTGGGCTCCT CTAGCCCTAGGGGTCCCCCTTTCTTGGGTCACCTGCCAGGGCTTATGACTGTGAATCCTT GATGTCATGATTTTATGTGACGACTCCTGGGAGTCCCCTGCCCATAGGCAGGAGCAGGGC TGGACCCCAAATCCCTTCCTCTTCCATGGAGAGAAGAGCGATCTGGCTTCTCCCGGGACC TCTGTGAATATTTATTCTATTTATGGTTCCCAGGAAGTGTGTTTGAAGGAAGCCCCTCCT TGGGTATTTCATCCAGTGCTGGAGTAGCTCCCTCTTCTGGACCTGGCTCAGGGGCCTGGG ATTTTGATATATTTTCTAATAAAGGACTTTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTTCCAAGATGGCTCCAGCGATTCTTGCCCGGCTGTCGGGGTGGCAGTGACGACGGGA AGCAGAAAGCCAGCTGGGAAACCGGCTTCACCCAGACAGCGATTCTTGCCCGGCTGTCGG GGTGGCAGTGACGACGGGAAGCAGAAAGCCAGCTGGTCCCAAGATCGCTGTTGGAGTGCT GGATGGAGCCTTTCTCTGTCCTCTGTGATATTTCCAATTTTATATAATGCCTCACATCTC TGCTCCCCCGGGACCCCCTGGAGCCCCAATGATCCCGAAGAAGACCGCTTGAACCTAGAC CTCAACCCAGGATGTTGCGGAGGCTGCTGGAGCGGCCCTGCACACTGGCCCTGCTTGTGG GCTCCCAGCTGGCCGTCATGATGTACCTGTCGCTGGGAGGCTTCCGAAGCCTGAGTGCCC TATTTGGCCGAGAGCAGGAGCCAACTTTTGACTATTCTCATCCCCATGATGTCTACAGTA ACCTCAGTCACCTGCATGGGGCCCCTGTTGCCCCAGGGGGCCCTCCAGCACCTCAAGGTC TGCCCTACTGTCCAGAACGATCCCCTCTCTTAGTGGGTCCCGTGTCCGTGTCCTTTAGCC CAGTGCCGTCGCTGGCAGAGATTATGGAGAGGAATCCCCGGGTGGAACCAGGGGGCCGGT ACCGCCCTGCAGGGTGTGAGGCCCGGTCCCGAACAGCCATAATTGTGCCCCACCGTGCCC GAGAGCAGCACCTGCGCCTGCTGCTGTACCACCTGCACCCGTTCCTGCAGCGTCAGCAGC TTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACATTTAATAGGGCAAAGC TGCTGAATGTTGGGGTGCGGGAGGCCCTGCGTGATGAAGAATGGGACTGCCTGTTCTTGC ATGATGTGGACCTACTGCCAGAGAATGACCACAACCTGTATGTGTGCGACCCCCGAGGAC CCCGACATGTTGCTGTTGCCATGAACAAGTTTGGATACAGCCTCCCGTACCCCCAGTACT TTGGAGGGGTCTCGGCGCTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATG AATACTGGGGCTGGGGTGGTGAGGATGATGACATTGCTACCAGGGTACGCCTCGCTGGGA TGAAGATTTCTCGCCCCCCCACATCTGTGGGACACTATAAGATGGTGAAGCACCGAGGAG ATAAGGGCAACGAGGAAAATCCCCACAGATTTGACCTCCTGGTCCGTACTCAGAATTCCT GGACACAAGATGGGATGAACTCACTGACATACCGATTGCTGGCTCGAGAGCTGGGCCCTC TCTATACGAACATCACAGCAGACATTGGAACTGACCCTCGGGGTCCCCGGACTCCCACTG GTCCCCGTTACCCACCTGGCTCCTCCCAGGCCTTCCGTCAAGAGATGCTGCAGCGCCGGC CCCCAGCCAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCACGGTTCACAAT GACTCCTCTTTAATCATGAAAGTGTATCTTGCCCACCTTAATCACAAAACCGAATCAGAG GGGTTGTATTCTCCCCACCCTCAGCTCCTCACTGCTTTTAGAGGGATGTGGGGGGACTAA CTCCAGTACTGTGCTGGGGGCAGGGGCCTCTCCTCACTGCTGGACTGGAGCTGGGCTCCT CTAGCCCTAGGGGTCCCCCTTTCTTGGGTCACCTGCCAGGGCTTATGACTGTGAATCCTT GATGTCATGATTTTATGTGACGACTCCTGGGAGTCCCCTGCCCATAGGCAGGAGCAGGGC TGGACCCCAAATCCCTTCCTCTTCCATGGAGAGAAGAGCGATCTGGCTTCTCCCGGGACC TCTGTGAATATTTATTCTATTTATGGTTCCCAGGAAGTGTGTTTGAAGGAAGCCCCTCCT TGGGTATTTCATCCAGTGCTGGAGTAGCTCCCTCTTCTGGACCTGGCTCAGGGGCCTGGG ATTTTGATATATTTTCTAATAAAGGACTTTGTCTCGAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 415-1906, - strand, RNAz p=0.969956 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-1906, - strand, RNAz p=0.969956 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 297-573, gnl|bosTau2|chr3 (7618352-7618628) | |
| 297-573, gnl|Hg17|chr1 (157958939-157958671) | |
| 297-573, gnl|Mm7|chr1 (171241821-171242094) | |
| 632-810, gnl|bosTau2|chr11 (2463048-2462873) | |
| 632-810, gnl|canFam2|chr33 (25958252-25958449) | |
| 632-810, gnl|danRer3|chr17 (39411049-39411246) | |
| 632-810, gnl|dasNov1|scaffold_6215 (19807-19610) | |
| 632-810, gnl|echTel1|scaffold_284067 (43243-43046) | |
| 632-810, gnl|fr1|chrUn (4715952-4715757) | |
| 632-810, gnl|galGal2|chr1 (74737052-74736848) | |
| 632-810, gnl|hg17|chr3 (120428340-120428537) | |
| 632-810, gnl|Hg17|chr3 (120428520-120428345) | |
| 632-810, gnl|loxAfr1|scaffold_26266 (7823-7626) | |
| 632-810, gnl|mm7|chr16 (38464174-38463977) | |
| 632-810, gnl|Mm7|chr16 (38463992-38464167) | |
| 632-810, gnl|monDom2|scaffold_24 (15683673-15683870) | |
| 632-810, gnl|oryCun1|scaffold_194466 (2563-2366) | |
| 632-810, gnl|panTro1|chr2 (122144140-122144337) | |
| 632-810, gnl|rheMac2|chr2 (39250567-39250764) | |
| 632-810, gnl|rn3|chr11 (63845469-63845666) | |
| 632-810, gnl|tetNig1|chr7 (4269252-4269447) | |
| 632-810, gnl|xenTro1|scaffold_159 (246973-247173) | |
| 1222-1906, gnl|bosTau2|chr3 (7621932-7622616) | |
| 1222-1906, gnl|Hg17|chr1 (157954959-157954290) | |
| 1222-1906, gnl|Mm7|chr1 (171246192-171246855) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 297-573, gnl|bosTau2|chr3 (7618352-7618628) | |
| 297-573, gnl|Hg17|chr1 (157958939-157958671) | |
| 297-573, gnl|Mm7|chr1 (171241821-171242094) | |
| 632-810, gnl|bosTau2|chr11 (2463048-2462873) | |
| 632-810, gnl|canFam2|chr33 (25958252-25958449) | |
| 632-810, gnl|danRer3|chr17 (39411049-39411246) | |
| 632-810, gnl|dasNov1|scaffold_6215 (19807-19610) | |
| 632-810, gnl|echTel1|scaffold_284067 (43243-43046) | |
| 632-810, gnl|fr1|chrUn (4715952-4715757) | |
| 632-810, gnl|galGal2|chr1 (74737052-74736848) | |
| 632-810, gnl|hg17|chr3 (120428340-120428537) | |
| 632-810, gnl|Hg17|chr3 (120428520-120428345) | |
| 632-810, gnl|loxAfr1|scaffold_26266 (7823-7626) | |
| 632-810, gnl|mm7|chr16 (38464174-38463977) | |
| 632-810, gnl|Mm7|chr16 (38463992-38464167) | |
| 632-810, gnl|monDom2|scaffold_24 (15683673-15683870) | |
| 632-810, gnl|oryCun1|scaffold_194466 (2563-2366) | |
| 632-810, gnl|panTro1|chr2 (122144140-122144337) | |
| 632-810, gnl|rheMac2|chr2 (39250567-39250764) | |
| 632-810, gnl|rn3|chr11 (63845469-63845666) | |
| 632-810, gnl|tetNig1|chr7 (4269252-4269447) | |
| 632-810, gnl|xenTro1|scaffold_159 (246973-247173) | |
| 1222-1906, gnl|bosTau2|chr3 (7621932-7622616) | |
| 1222-1906, gnl|Hg17|chr1 (157954959-157954290) | |
| 1222-1906, gnl|Mm7|chr1 (171246192-171246855) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ute (0.398353) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ute (0.398353) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |