Non-Coding RNA Search

Ss1.1-Liv1-LVR010061C03.5

Sequence:


               
               CCAGCAGAGGACGAGGCCAGTTCTCTTTTCTGGTCTGACTGGCTTGGAAATTCCCCGAGC
TTGACCCCGCCCAGGAGAAATCCCCTGCCAGCGTTTATAGGGCGCCGCGGCGGCGCTGCC
GAGCCCACAACAGTCCGAGGCCATCGTCCCGCCCGCCCGAGCCACCGCGAGCAGCCAGCG
CGCCGCGCAGCCTGTGGCCCGCGCACCTAGGGAGCAGCGCCCAAGCCCTCATCGCGCCAT
GTTCCAGCCCGCAGAGCCCGGCCAGGAGTGGGCCATGGAGGGGCCCCGGGACGCGCTCAA
GAAGGAGCGGCTACTGGACGACCGCCACGACAGCGGCCTGGACTCCATGAAGGACGAGGA
GTACGAGCAGATGGTGAAGGAGCTGCGCGAGATCCGCCTCGAGCCGCAGGAGGCGCCCCG
CGGCGCCGAGCCCTGGAAGCAGCAGCTCACCGAGGACGGAGACTCGTTCCTGCACTTGGC
CATCATCCATGAAGAGAAGGCACTGACCATGGAAGTGGTCCGCCAAGTGAAGGGAGATCT
GGCTTTTCTTAACTTCCAGAACAACCTGCAGCAGACTCCACTCCACTTGGCGGTGATCAC
CAACCAGCCAGAAATCGCTGAGGCACTTCTGGAAGCTGGCTGTGATCCTGAGCTCCGAGA
CTTTCGAGGAAATACCCCTCTACACCTTGCCTGTGAGCAGGGCTGCCTGGCCAGTGTGGG
AGTCCTGACTCAGCCCCGCGGGACCCAGCACCTCCACTCCATTCTGCAGGCCACCAACTA
CAATGGCCACACATGTCTGCACTTAGCCTCGATCCATGGCTACCTGGGCATTGTGGAGCT
GTTGGTGTCTTTGGGTGCTGATGTCAACGCTCAGGAGCCCTGCAATGGCCGAACCGCCCT
GCATCTTGCGGTGGACCTGCAGAATCCCGACCTGGTGTCGCTCTTGTTGAAGTGTGGGGC
TGATGTCAACAGAGTCACCTACCAGGGCTACTCCCCGTACCAGCTCACCTGGGGCCGCCC
AAGCACTCGGATACAGCAGCAGCTGGGCCAGCTGACCCTAGAAAACCTCCAGATGCTTCC
AGAGAGCGAGGATGAGGAGAGCTATGACACGGAGTCAGAGTTCACAGAGGATGAGCTGCC
CTATGACGACTGCGTGCTTGGAGGCCAGCGCCTGACGTTATGAGCTTTGGAAAGTGTCTA
AAAGACCATGGACTTGTACATTTGTACAAAATCAAGAGTTTTATTTTTCTAAAAAAAAAG
AAAAAAAGAAAAAAAAAGAAAAAAGGGTATACTTATAACCACACCGCACACTGCCTGGCC
TGAAACATTTTGCTCTGGTGGATTAGCCCCGATTTTGTTATTCTTGTGAACTTTGGAAAG
GCGCCAAGGAGGATCATCGGAATGCAGAGAGAACCTCTTTTAAACGGCACCTTGGTGGGG
CCTGGGGGAAAGGTTATCCCTAATTTGATGGGACTCTTTTATTTATTGCGCTTCTTGGTT
GAACCACCATGGAGTCAGTGGTGGAGCCCAGGTGTATCTGGGAAATGTTAGAATCAGGTG
TGTTGTTAAACCTGTCAGTGGGGTGGGGTTAAAAGTCACGACCTGTCAAGGTTTGTGTTA
CCCTGCTGTAAATACTGTACATAATGTATTTTGTTGGTAATTATTTTGGTACTTCTAAGA
TGTATATTTATTAAATGGATTTTTACAAACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCAGAGGACGAGGCCAGTTCTCTTTTCTGGTCTGACTGGCTTGGAAATTCCCCGAGC
TTGACCCCGCCCAGGAGAAATCCCCTGCCAGCGTTTATAGGGCGCCGCGGCGGCGCTGCC
GAGCCCACAACAGTCCGAGGCCATCGTCCCGCCCGCCCGAGCCACCGCGAGCAGCCAGCG
CGCCGCGCAGCCTGTGGCCCGCGCACCTAGGGAGCAGCGCCCAAGCCCTCATCGCGCCAT
GTTCCAGCCCGCAGAGCCCGGCCAGGAGTGGGCCATGGAGGGGCCCCGGGACGCGCTCAA
GAAGGAGCGGCTACTGGACGACCGCCACGACAGCGGCCTGGACTCCATGAAGGACGAGGA
GTACGAGCAGATGGTGAAGGAGCTGCGCGAGATCCGCCTCGAGCCGCAGGAGGCGCCCCG
CGGCGCCGAGCCCTGGAAGCAGCAGCTCACCGAGGACGGAGACTCGTTCCTGCACTTGGC
CATCATCCATGAAGAGAAGGCACTGACCATGGAAGTGGTCCGCCAAGTGAAGGGAGATCT
GGCTTTTCTTAACTTCCAGAACAACCTGCAGCAGACTCCACTCCACTTGGCGGTGATCAC
CAACCAGCCAGAAATCGCTGAGGCACTTCTGGAAGCTGGCTGTGATCCTGAGCTCCGAGA
CTTTCGAGGAAATACCCCTCTACACCTTGCCTGTGAGCAGGGCTGCCTGGCCAGTGTGGG
AGTCCTGACTCAGCCCCGCGGGACCCAGCACCTCCACTCCATTCTGCAGGCCACCAACTA
CAATGGCCACACATGTCTGCACTTAGCCTCGATCCATGGCTACCTGGGCATTGTGGAGCT
GTTGGTGTCTTTGGGTGCTGATGTCAACGCTCAGGAGCCCTGCAATGGCCGAACCGCCCT
GCATCTTGCGGTGGACCTGCAGAATCCCGACCTGGTGTCGCTCTTGTTGAAGTGTGGGGC
TGATGTCAACAGAGTCACCTACCAGGGCTACTCCCCGTACCAGCTCACCTGGGGCCGCCC
AAGCACTCGGATACAGCAGCAGCTGGGCCAGCTGACCCTAGAAAACCTCCAGATGCTTCC
AGAGAGCGAGGATGAGGAGAGCTATGACACGGAGTCAGAGTTCACAGAGGATGAGCTGCC
CTATGACGACTGCGTGCTTGGAGGCCAGCGCCTGACGTTATGAGCTTTGGAAAGTGTCTA
AAAGACCATGGACTTGTACATTTGTACAAAATCAAGAGTTTTATTTTTCTAAAAAAAAAG
AAAAAAAGAAAAAAAAAGAAAAAAGGGTATACTTATAACCACACCGCACACTGCCTGGCC
TGAAACATTTTGCTCTGGTGGATTAGCCCCGATTTTGTTATTCTTGTGAACTTTGGAAAG
GCGCCAAGGAGGATCATCGGAATGCAGAGAGAACCTCTTTTAAACGGCACCTTGGTGGGG
CCTGGGGGAAAGGTTATCCCTAATTTGATGGGACTCTTTTATTTATTGCGCTTCTTGGTT
GAACCACCATGGAGTCAGTGGTGGAGCCCAGGTGTATCTGGGAAATGTTAGAATCAGGTG
TGTTGTTAAACCTGTCAGTGGGGTGGGGTTAAAAGTCACGACCTGTCAAGGTTTGTGTTA
CCCTGCTGTAAATACTGTACATAATGTATTTTGTTGGTAATTATTTTGGTACTTCTAAGA
TGTATATTTATTAAATGGATTTTTACAAACAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6688192|emb|CAB65113.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6688192|emb|CAB65113.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               350-467, - strand, RNAz p=0.694158

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               350-467, - strand, RNAz p=0.694158

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-467, gnl|bosTau2|chr21 (30139765-30139301)
               

               
               3-467, gnl|Hg17|chr14 (34943831-34943373)
               

               
               3-467, gnl|Mm7|chr12 (53418757-53418338)
               


               
               573-803, gnl|bosTau2|chr21 (30138244-30138015)
               

               
               573-803, gnl|Hg17|chr14 (34942319-34942086)
               

               
               573-803, gnl|Mm7|chr12 (53417372-53417148)
               


               
               1134-1711, gnl|bosTau2|chr21 (30136811-30136245)
               

               
               1134-1711, gnl|Hg17|chr14 (34941019-34940469)
               

               
               1134-1711, gnl|Mm7|chr12 (53416011-53415450)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-467, gnl|bosTau2|chr21 (30139765-30139301)
               

               
               3-467, gnl|Hg17|chr14 (34943831-34943373)
               

               
               3-467, gnl|Mm7|chr12 (53418757-53418338)
               


               
               573-803, gnl|bosTau2|chr21 (30138244-30138015)
               

               
               573-803, gnl|Hg17|chr14 (34942319-34942086)
               

               
               573-803, gnl|Mm7|chr12 (53417372-53417148)
               


               
               1134-1711, gnl|bosTau2|chr21 (30136811-30136245)
               

               
               1134-1711, gnl|Hg17|chr14 (34941019-34940469)
               

               
               1134-1711, gnl|Mm7|chr12 (53416011-53415450)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               hlv (0.557025)
               

               
               med (0.465008)
               

               
               csk (0.422238)
               

               
               cag (0.302389)
               

               
               nmm (0.265604)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.557025)
               

               
               med (0.465008)
               

               
               csk (0.422238)
               

               
               cag (0.302389)
               

               
               nmm (0.265604)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	3-467, gnl\|bosTau2\|chr21 (30139765-30139301)
	3-467, gnl\|Hg17\|chr14 (34943831-34943373)
	3-467, gnl\|Mm7\|chr12 (53418757-53418338)

	573-803, gnl\|bosTau2\|chr21 (30138244-30138015)
	573-803, gnl\|Hg17\|chr14 (34942319-34942086)
	573-803, gnl\|Mm7\|chr12 (53417372-53417148)

	1134-1711, gnl\|bosTau2\|chr21 (30136811-30136245)
	1134-1711, gnl\|Hg17\|chr14 (34941019-34940469)
	1134-1711, gnl\|Mm7\|chr12 (53416011-53415450)

	hlv (0.557025)
	med (0.465008)
	csk (0.422238)
	cag (0.302389)
	nmm (0.265604)
	cbl (0.229595)
	tes (0.207814)
	nlu (0.191681)
	sto (0.179824)
	fty (0.17584)
	rec (0.17307)
	mcp (0.170648)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	eli (0.151814)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	nca (0.136874)
	lyg (0.133103)
	cov (0.132153)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	clu (0.119646)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)