Ss1.1-Liv1-LVR010061D01.5
|
CGCGCTCTGGGTCGCTCCGCCGACTAGCGGCCGCCGCTTAGCTGCCTAGGGAGTGCGCCG
AGAGGAACTGTGCCTTGGCCTGGGGGCCAATCTGCGACCCACCGTCCGGCGAGAGGCACC
TAGAGTGCCGGGCGTGGCGCCACCGCGCGACCGTGACGTCAGGCGCGGGCCGGCGCGCCA
TTGGCCGGCGGGCATGTGGCGCGCTCTGGCGCGAGCAGGGGCGATTGGAAGGGCGGTGTT
GGGGGGCGCGGCTCGCGCGAGGGGCGGGCCCTGCATGGTGGGGTGGCGCTCCGCCGCAGG
AAGCGCTGCTGAGCGGAGTCCCTGCGACGCCGGGCCGCTGAGGTCTCCAGGACTGCGCGC
GCGTTCGCCCACGATGCCCGAGATAAACACGGACCATCTGGACGCGCAGCAGGTGCAGCT
GCTGGCGGAGATGTGCATCCTCATCGACGAGAACGACCGCAGGATCGGGGCGGAGACCAA
GAAGAACTGTCACCTGAACGAGAACATCAAGAAAGGATTATTGCACCGGGCTTTTAGTGT
CTTCCTGTTCAACACTGAAAATAAACTTCTGCTCCAACAACGATCAGATGCCAAAATTAC
TTTTCCAGGTTGTTTCAGTAATGCTTGTTGCAGCCATCCACTAAGCACTCCAGGAGAGCT
TGAAGAAAATGACGCGATTGGAGTGAGAAGAGCAGCACAGAGGCGTTTAAAGGCTGAACT
GGGCATTCCTCTGGAAGAGGTTCCTCCAGAAGAAATCAATTATCTGACACGAATTTACTA
TAAGGCTCAGTCGGATGGTATCTGGGGAGAACATGAAATTGATTACATCTTGTTGATGAA
GAAGGATGTAACCCTGAATCCAGATCCCAATGAGATTAAAAGCCACTGTTATGTTTCACA
GGAAGAACTAAAGGAACTTCTGAGAAAGGCAGCCAGGGGTGAAGTTAAGGTGACTCCGTG
GTTTCAGATGATTGCAGATAGGTTTCTCTTTCACTGGTGGGATAACTTAAATCACTGGAA
TCAGTTTGTTGATCACGAGAAAATACATAGAATGTAAACGCGGAGAGGAACGCGTGTAAA
GTACCGACGATTCCTCTACTGAAAGCTGAAGATGAATTTCTTAAAAATTTGGTTCCCCAT
TGGAACTCATTGGAAACACTGATATTTCACAACCAGAATTTGTGTGGAAAAGAATTCTTA
ATTCTGTATCCTACACCCCGTGTATGTAAACTGCTGTTTGCCAAAAACATTTCTGAGAGA
TGTTTGTAAAAAAGAGAGCAAATAAACTTAATTGAGCCTAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCGCTCTGGGTCGCTCCGCCGACTAGCGGCCGCCGCTTAGCTGCCTAGGGAGTGCGCCG
AGAGGAACTGTGCCTTGGCCTGGGGGCCAATCTGCGACCCACCGTCCGGCGAGAGGCACC
TAGAGTGCCGGGCGTGGCGCCACCGCGCGACCGTGACGTCAGGCGCGGGCCGGCGCGCCA
TTGGCCGGCGGGCATGTGGCGCGCTCTGGCGCGAGCAGGGGCGATTGGAAGGGCGGTGTT
GGGGGGCGCGGCTCGCGCGAGGGGCGGGCCCTGCATGGTGGGGTGGCGCTCCGCCGCAGG
AAGCGCTGCTGAGCGGAGTCCCTGCGACGCCGGGCCGCTGAGGTCTCCAGGACTGCGCGC
GCGTTCGCCCACGATGCCCGAGATAAACACGGACCATCTGGACGCGCAGCAGGTGCAGCT
GCTGGCGGAGATGTGCATCCTCATCGACGAGAACGACCGCAGGATCGGGGCGGAGACCAA
GAAGAACTGTCACCTGAACGAGAACATCAAGAAAGGATTATTGCACCGGGCTTTTAGTGT
CTTCCTGTTCAACACTGAAAATAAACTTCTGCTCCAACAACGATCAGATGCCAAAATTAC
TTTTCCAGGTTGTTTCAGTAATGCTTGTTGCAGCCATCCACTAAGCACTCCAGGAGAGCT
TGAAGAAAATGACGCGATTGGAGTGAGAAGAGCAGCACAGAGGCGTTTAAAGGCTGAACT
GGGCATTCCTCTGGAAGAGGTTCCTCCAGAAGAAATCAATTATCTGACACGAATTTACTA
TAAGGCTCAGTCGGATGGTATCTGGGGAGAACATGAAATTGATTACATCTTGTTGATGAA
GAAGGATGTAACCCTGAATCCAGATCCCAATGAGATTAAAAGCCACTGTTATGTTTCACA
GGAAGAACTAAAGGAACTTCTGAGAAAGGCAGCCAGGGGTGAAGTTAAGGTGACTCCGTG
GTTTCAGATGATTGCAGATAGGTTTCTCTTTCACTGGTGGGATAACTTAAATCACTGGAA
TCAGTTTGTTGATCACGAGAAAATACATAGAATGTAAACGCGGAGAGGAACGCGTGTAAA
GTACCGACGATTCCTCTACTGAAAGCTGAAGATGAATTTCTTAAAAATTTGGTTCCCCAT
TGGAACTCATTGGAAACACTGATATTTCACAACCAGAATTTGTGTGGAAAAGAATTCTTA
ATTCTGTATCCTACACCCCGTGTATGTAAACTGCTGTTTGCCAAAAACATTTCTGAGAGA
TGTTTGTAAAAAAGAGAGCAAATAAACTTAATTGAGCCTAAAAAAAAAAAAAAAAAAAAA |
|
gi|55730243|emb|CAH91844.1| |
Protein identifier
|
gi|55730243|emb|CAH91844.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
10-286, gnl|bosTau2|chr13 (31345366-31345642) |
|
10-286, gnl|Mm7|chr13 (8764437-8764737) |
| |
|
341-516, gnl|bosTau2|chr13 (31345938-31346113) |
|
341-516, gnl|dasNov1|scaffold_60427 (42701-42598) |
|
341-516, gnl|echTel1|scaffold_99693 (6044-6148) |
|
341-516, gnl|fr1|chrUn (289548837-289548715) |
|
341-516, gnl|hg17|chr10 (1060513-1060628) |
|
341-516, gnl|Hg17|chr10 (1080081-1079938) |
|
341-516, gnl|loxAfr1|scaffold_26902 (10814-10929) |
|
341-516, gnl|mm7|chr13 (8869785-8869678) |
|
341-516, gnl|Mm7|chr13 (8765555-8765699) |
|
341-516, gnl|monDom2|scaffold_7 (24534217-24534332) |
|
341-516, gnl|oryCun1|scaffold_156372 (5956-5857) |
|
341-516, gnl|rheMac2|chr10 (38068114-38068220) |
|
341-516, gnl|rn3|chr17 (72544400-72544510) |
|
341-516, gnl|tetNig1|chrUn_random (134049098-134048991) |
|
341-516, gnl|xenTro1|scaffold_378 (582825-582718) |
| |
|
738-1291, gnl|bosTau2|chr13 (31347886-31348436) |
|
738-1291, gnl|Hg17|chr10 (1077446-1076850) |
|
738-1291, gnl|Mm7|chr13 (8769110-8769666) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-286, gnl|bosTau2|chr13 (31345366-31345642) |
|
10-286, gnl|Mm7|chr13 (8764437-8764737) |
| |
|
341-516, gnl|bosTau2|chr13 (31345938-31346113) |
|
341-516, gnl|dasNov1|scaffold_60427 (42701-42598) |
|
341-516, gnl|echTel1|scaffold_99693 (6044-6148) |
|
341-516, gnl|fr1|chrUn (289548837-289548715) |
|
341-516, gnl|hg17|chr10 (1060513-1060628) |
|
341-516, gnl|Hg17|chr10 (1080081-1079938) |
|
341-516, gnl|loxAfr1|scaffold_26902 (10814-10929) |
|
341-516, gnl|mm7|chr13 (8869785-8869678) |
|
341-516, gnl|Mm7|chr13 (8765555-8765699) |
|
341-516, gnl|monDom2|scaffold_7 (24534217-24534332) |
|
341-516, gnl|oryCun1|scaffold_156372 (5956-5857) |
|
341-516, gnl|rheMac2|chr10 (38068114-38068220) |
|
341-516, gnl|rn3|chr17 (72544400-72544510) |
|
341-516, gnl|tetNig1|chrUn_random (134049098-134048991) |
|
341-516, gnl|xenTro1|scaffold_378 (582825-582718) |
| |
|
738-1291, gnl|bosTau2|chr13 (31347886-31348436) |
|
738-1291, gnl|Hg17|chr10 (1077446-1076850) |
|
738-1291, gnl|Mm7|chr13 (8769110-8769666) |
|
tes (1.4547) |
|
cbe (1.19617) |
|
mgm (0.901713) |
|
spc (0.793561) |
|
sug (0.763747) |
|
ski (0.733676) |
|
cli (0.611247) |
|
lun (0.451467) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
med (0.348756) |
|
vin (0.332557) |
|
mga (0.32041) |
|
fco (0.314416) |
|
eli (0.303628) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
nca (0.273748) |
|
pla (0.267344) |
|
thg (0.253582) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
nms (0.213858) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
ctl (0.153069) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
eru (0.120048) |
|
clu (0.119646) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
tes (1.4547) |
|
cbe (1.19617) |
|
mgm (0.901713) |
|
spc (0.793561) |
|
sug (0.763747) |
|
ski (0.733676) |
|
cli (0.611247) |
|
lun (0.451467) |
|
fbs (0.350693) |
|
sin (0.349895) |
|
med (0.348756) |
|
vin (0.332557) |
|
mga (0.32041) |
|
fco (0.314416) |
|
eli (0.303628) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
nca (0.273748) |
|
pla (0.267344) |
|
thg (0.253582) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
nms (0.213858) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
ctl (0.153069) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ste (0.135208) |
|
cov (0.132153) |
|
ret (0.128733) |
|
bla (0.124347) |
|
eru (0.120048) |
|
clu (0.119646) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
