Ss1.1-Liv1-LVR010061D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGTCTGATTCTACCGGGCTCGGAGCACCGGGCACCTCCCTTCAGCACCATGACTTGGTC TTCGCACCCTCGGAGTTTAATAATCCTCAGCTTCTACACGCTTTCAATGCTCTCTTCAAC ATGCCTGGCATATGTTGCCACCCGAGAAAATTGCTGCATCTTAGATGAGAGATTTGGTAG TTACTGCCCAACTATGTGTGGGATCGCAGGTTTCCTGTCTACTTACCAAAACACTGTAGA GAAGGATCTACAGAATTTGGAGGGCATCCTACATCAAGTTGAGAACAAAACATCGGAAGC CAGAGAGCTGATCAAAGCCATCCAGATCAGCTATAACCCTGAAGATCTATCAAAACCAGA TAGGATACAAAGTGCCACCAAGGAGTCCAAGAAAATGTTGGAAGAAATTATGAAATACGA AAACTTGATTACAACACACGACTCAACGATTCGATTTTTACAGGAAATCTACAATTCAAA TAATCAAAAGATCTCTAACCTGAAACAGAAAGTGATCCAGCTTGAAGCAAAGTGTCAGGA GCCTTGCAAAGATACAGTAAAAATACACGACACAACTGGGAAAGATTGTCAAGAAATTGC CAATAAGGGGGCCAGAGAGAGTGGGCTTTACTTTATCAAACCTCTGAAAGCTCCGAAGAA GTTCTTAGTCTACTGTGAAATTGATGGGTCTGGAAATGGATGGACTGTGTTTCAGAAGAG GGTGGACGGCAGTGAGGATTTCAAGAAAAACTGGATTCAATATAAAGAAGGGTTTGGACA TCTGTCTCCTACTGGAACCACAGAATTTTGGCTGGGAAATGAGAAGATTCATCTGATAAC CACACAGTCTGCCATCCCCTATGTATTAAGAGTGCAGCTGGAGGACTGGAGTGGCAAAAC CAGTACTGCCGACTACTCCACATTCAGGGTGGGACCTGAAAGTGACAAGTACCGCATGAC ATACGCCTACTTCCTTGGTGGAGATGCCGGAGATGCATTTGATGGCTTTGATTTTGGCGA TGATTCTAGTGACAAGTTTCTCACATCCCACAATGGCATGCAGTTCAGTACCTGGGACAA TGACAATGATAAATTTGATGGGAACTGTGCTGAACAGGATGGATCTGGTTGGTGGATGAA CAAGTGTCATGCTGGCCACCTCAATGGAGTTTATTACCCAGGGGGCACTTACTCAAAATC ATCTACTCCTAATGGTTATGATAATGGCATTATTTGGGCCACTTGGAAATCCCGGTGGTA TTCCATGAAGAAAACCACCATGAAGTTGATCCCATATAACAGAATTGCCATCGAAGATGG ACAACAGCACAGCCTTGGGGGAGCCAAACAGGTCAGACCAGACCACCACGTTGAAATAGA ATATGACTAAGTCACTGACCTTGAGACGTAGCTGTTCATTCTATTAGCCCATAAAATTCA GAAACGTTTTTGAAATTGTCTTCCCATTTTCTCTGACGGTGTTTATTAATTTTAAGTCTT TTATTAACGGCAGTTAGCCTTGAATGGCCATTAAAACTCACTTCCGACTACAGTCCCAAA TGGCTGAAGGCAGAATTATTTAAAAATTGTTTATTTGATGAGATATTGTTTTGGCTCATT TCCTAAATATGTAATAAAATTATTGTGGTATTTTGCATTGTAATGATCATGCATTATTTT GTCTTGGTGATTTTTAAAAATTATTTCTTAAATATTTTAGTATATGTTAATTAAATGGGG GCAAATTCTAGCATGTCAAATGCCTAAGTATTTTTTCCATGTTTACTACCCCTAAGTCAT TCATATTTAATTGTTATTTTAAATGGAAAGAATTGTATCTTTTTAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGTCTGATTCTACCGGGCTCGGAGCACCGGGCACCTCCCTTCAGCACCATGACTTGGTC TTCGCACCCTCGGAGTTTAATAATCCTCAGCTTCTACACGCTTTCAATGCTCTCTTCAAC ATGCCTGGCATATGTTGCCACCCGAGAAAATTGCTGCATCTTAGATGAGAGATTTGGTAG TTACTGCCCAACTATGTGTGGGATCGCAGGTTTCCTGTCTACTTACCAAAACACTGTAGA GAAGGATCTACAGAATTTGGAGGGCATCCTACATCAAGTTGAGAACAAAACATCGGAAGC CAGAGAGCTGATCAAAGCCATCCAGATCAGCTATAACCCTGAAGATCTATCAAAACCAGA TAGGATACAAAGTGCCACCAAGGAGTCCAAGAAAATGTTGGAAGAAATTATGAAATACGA AAACTTGATTACAACACACGACTCAACGATTCGATTTTTACAGGAAATCTACAATTCAAA TAATCAAAAGATCTCTAACCTGAAACAGAAAGTGATCCAGCTTGAAGCAAAGTGTCAGGA GCCTTGCAAAGATACAGTAAAAATACACGACACAACTGGGAAAGATTGTCAAGAAATTGC CAATAAGGGGGCCAGAGAGAGTGGGCTTTACTTTATCAAACCTCTGAAAGCTCCGAAGAA GTTCTTAGTCTACTGTGAAATTGATGGGTCTGGAAATGGATGGACTGTGTTTCAGAAGAG GGTGGACGGCAGTGAGGATTTCAAGAAAAACTGGATTCAATATAAAGAAGGGTTTGGACA TCTGTCTCCTACTGGAACCACAGAATTTTGGCTGGGAAATGAGAAGATTCATCTGATAAC CACACAGTCTGCCATCCCCTATGTATTAAGAGTGCAGCTGGAGGACTGGAGTGGCAAAAC CAGTACTGCCGACTACTCCACATTCAGGGTGGGACCTGAAAGTGACAAGTACCGCATGAC ATACGCCTACTTCCTTGGTGGAGATGCCGGAGATGCATTTGATGGCTTTGATTTTGGCGA TGATTCTAGTGACAAGTTTCTCACATCCCACAATGGCATGCAGTTCAGTACCTGGGACAA TGACAATGATAAATTTGATGGGAACTGTGCTGAACAGGATGGATCTGGTTGGTGGATGAA CAAGTGTCATGCTGGCCACCTCAATGGAGTTTATTACCCAGGGGGCACTTACTCAAAATC ATCTACTCCTAATGGTTATGATAATGGCATTATTTGGGCCACTTGGAAATCCCGGTGGTA TTCCATGAAGAAAACCACCATGAAGTTGATCCCATATAACAGAATTGCCATCGAAGATGG ACAACAGCACAGCCTTGGGGGAGCCAAACAGGTCAGACCAGACCACCACGTTGAAATAGA ATATGACTAAGTCACTGACCTTGAGACGTAGCTGTTCATTCTATTAGCCCATAAAATTCA GAAACGTTTTTGAAATTGTCTTCCCATTTTCTCTGACGGTGTTTATTAATTTTAAGTCTT TTATTAACGGCAGTTAGCCTTGAATGGCCATTAAAACTCACTTCCGACTACAGTCCCAAA TGGCTGAAGGCAGAATTATTTAAAAATTGTTTATTTGATGAGATATTGTTTTGGCTCATT TCCTAAATATGTAATAAAATTATTGTGGTATTTTGCATTGTAATGATCATGCATTATTTT GTCTTGGTGATTTTTAAAAATTATTTCTTAAATATTTTAGTATATGTTAATTAAATGGGG GCAAATTCTAGCATGTCAAATGCCTAAGTATTTTTTCCATGTTTACTACCCCTAAGTCAT TCATATTTAATTGTTATTTTAAATGGAAAGAATTGTATCTTTTTAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 176-378, - strand, RNAz p=0.982487 | |
| 787-907, - strand, RNAz p=0.835515 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-378, - strand, RNAz p=0.982487 | |
| 787-907, - strand, RNAz p=0.835515 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 176-378, gnl|bosTau2|chr17 (486672-486874) | |
| 176-378, gnl|Hg17|chr4 (155890958-155890756) | |
| 176-378, gnl|Mm7|chr3 (83113059-83113259) | |
| 453-584, gnl|bosTau2|chr17 (488545-488676) | |
| 453-584, gnl|canFam2|chr15 (55288320-55288480) | |
| 453-584, gnl|danRer3|chr1 (24981956-24982115) | |
| 453-584, gnl|echTel1|scaffold_306128 (45082-44923) | |
| 453-584, gnl|galGal2|chr4 (20939769-20939910) | |
| 453-584, gnl|hg17|chr4 (155888803-155888964) | |
| 453-584, gnl|Hg17|chr4 (155888955-155888824) | |
| 453-584, gnl|loxAfr1|scaffold_967 (120544-120704) | |
| 453-584, gnl|mm7|chr3 (83114901-83114741) | |
| 453-584, gnl|Mm7|chr3 (83114748-83114879) | |
| 453-584, gnl|monDom2|scaffold_9 (25188086-25188238) | |
| 453-584, gnl|oryCun1|scaffold_197720 (5393-5233) | |
| 453-584, gnl|panTro1|chr3 (173253457-173253618) | |
| 453-584, gnl|rheMac2|chr5 (146812180-146812341) | |
| 453-584, gnl|rn3|chr2 (174679725-174679565) | |
| 453-584, gnl|tetNig1|chr18 (8025271-8025128) | |
| 453-584, gnl|xenTro1|scaffold_93 (709316-709155) | |
| 708-907, gnl|bosTau2|chr17 (490012-490212) | |
| 708-907, gnl|canFam2|chr15 (55286787-55286932) | |
| 708-907, gnl|danRer3|chr1 (24980363-24980506) | |
| 708-907, gnl|dasNov1|scaffold_2284 (167990-168135) | |
| 708-907, gnl|echTel1|scaffold_306128 (46780-46635) | |
| 708-907, gnl|fr1|chrUn (13470445-13470301) | |
| 708-907, gnl|galGal2|chr4 (20938762-20938907) | |
| 708-907, gnl|hg17|chr4 (155887220-155887365) | |
| 708-907, gnl|Hg17|chr4 (155887418-155887218) | |
| 708-907, gnl|mm7|chr3 (83116219-83116074) | |
| 708-907, gnl|Mm7|chr3 (83116019-83116219) | |
| 708-907, gnl|monDom2|scaffold_9 (25184917-25185062) | |
| 708-907, gnl|oryCun1|scaffold_197720 (7604-7459) | |
| 708-907, gnl|panTro1|chr3 (173251876-173252021) | |
| 708-907, gnl|rheMac2|chr5 (146810602-146810747) | |
| 708-907, gnl|rn3|chr2 (174681043-174680898) | |
| 708-907, gnl|tetNig1|chr18 (8025998-8025853) | |
| 708-907, gnl|xenTro1|scaffold_93 (711530-711385) | |
| 1179-1847, gnl|bosTau2|chr17 (493254-493926) | |
| 1179-1847, gnl|Hg17|chr4 (155883826-155883141) | |
| 1179-1847, gnl|Mm7|chr3 (83118820-83119490) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-378, gnl|bosTau2|chr17 (486672-486874) | |
| 176-378, gnl|Hg17|chr4 (155890958-155890756) | |
| 176-378, gnl|Mm7|chr3 (83113059-83113259) | |
| 453-584, gnl|bosTau2|chr17 (488545-488676) | |
| 453-584, gnl|canFam2|chr15 (55288320-55288480) | |
| 453-584, gnl|danRer3|chr1 (24981956-24982115) | |
| 453-584, gnl|echTel1|scaffold_306128 (45082-44923) | |
| 453-584, gnl|galGal2|chr4 (20939769-20939910) | |
| 453-584, gnl|hg17|chr4 (155888803-155888964) | |
| 453-584, gnl|Hg17|chr4 (155888955-155888824) | |
| 453-584, gnl|loxAfr1|scaffold_967 (120544-120704) | |
| 453-584, gnl|mm7|chr3 (83114901-83114741) | |
| 453-584, gnl|Mm7|chr3 (83114748-83114879) | |
| 453-584, gnl|monDom2|scaffold_9 (25188086-25188238) | |
| 453-584, gnl|oryCun1|scaffold_197720 (5393-5233) | |
| 453-584, gnl|panTro1|chr3 (173253457-173253618) | |
| 453-584, gnl|rheMac2|chr5 (146812180-146812341) | |
| 453-584, gnl|rn3|chr2 (174679725-174679565) | |
| 453-584, gnl|tetNig1|chr18 (8025271-8025128) | |
| 453-584, gnl|xenTro1|scaffold_93 (709316-709155) | |
| 708-907, gnl|bosTau2|chr17 (490012-490212) | |
| 708-907, gnl|canFam2|chr15 (55286787-55286932) | |
| 708-907, gnl|danRer3|chr1 (24980363-24980506) | |
| 708-907, gnl|dasNov1|scaffold_2284 (167990-168135) | |
| 708-907, gnl|echTel1|scaffold_306128 (46780-46635) | |
| 708-907, gnl|fr1|chrUn (13470445-13470301) | |
| 708-907, gnl|galGal2|chr4 (20938762-20938907) | |
| 708-907, gnl|hg17|chr4 (155887220-155887365) | |
| 708-907, gnl|Hg17|chr4 (155887418-155887218) | |
| 708-907, gnl|mm7|chr3 (83116219-83116074) | |
| 708-907, gnl|Mm7|chr3 (83116019-83116219) | |
| 708-907, gnl|monDom2|scaffold_9 (25184917-25185062) | |
| 708-907, gnl|oryCun1|scaffold_197720 (7604-7459) | |
| 708-907, gnl|panTro1|chr3 (173251876-173252021) | |
| 708-907, gnl|rheMac2|chr5 (146810602-146810747) | |
| 708-907, gnl|rn3|chr2 (174681043-174680898) | |
| 708-907, gnl|tetNig1|chr18 (8025998-8025853) | |
| 708-907, gnl|xenTro1|scaffold_93 (711530-711385) | |
| 1179-1847, gnl|bosTau2|chr17 (493254-493926) | |
| 1179-1847, gnl|Hg17|chr4 (155883826-155883141) | |
| 1179-1847, gnl|Mm7|chr3 (83118820-83119490) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| lun (26.0346) | |
| fli (1.82593) | |
| cli (1.37531) | |
| eli (0.910885) | |
| fat (0.147427) | |
| liv (0.146284) | |
| kid (0.129735) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (26.0346) | |
| fli (1.82593) | |
| cli (1.37531) | |
| eli (0.910885) | |
| fat (0.147427) | |
| liv (0.146284) | |
| kid (0.129735) |