Non-Coding RNA Search

Ss1.1-Liv1-LVR010062A01.5

Sequence:


               
               GCCAGCTCAGGACTGCTTCACTGGGCACTAGGCACTGGGGCCGGAATGGGCCTGCCCGGC
TCCCCACGGCAGTGGGTCCTGCTGCTGCTGGGGCTGCTGCTCCCCCCTGCCGCCCCCTTC
TGGCTCCTCAATGTGCTCTTCCCCCCGCACACCACGCCCAAGGCTGAGCTCAGTAACCAC
ACACGGCCCGTCATCCTCGTACCTGGCTGCCTGGGGAATCAGCTGGAAGCCAAGCTGGAT
AAACCAGATGTGGTGAACTGGATGTGCTACCGCAAGACAGAGGACTTTTTCACCATTTGG
CTGGATCTCAATATGTTCCTACCCCTTGGGGTAGACTGCTGGATTGATAATACCAGGGTT
GTCTACAACCGCACCTCTGGGCGCGTGTCCAACGCACCCGGTGTAGAGATCCGTGTCCCC
GGCTTTGGCAAGACCTACTCTGTCGAGTACCTGGACAACAGCAAGTTGGCAGGTTATATG
CACACACTGGTACAAAACCTGGTCAATAATGGGTATGTGCGGGATGAGACCGTGCGGGCT
GCCCCCTACGACTGGCGGCTGGAGCCCAGCCAGCAGGAAGAGTACTACCTGAAGCTTGCT
GGGCTGGTGGAAGAAATGCATGCTACTTATGGAAAGCCGGTCTTCCTCATTGGGCACAGC
CTTGGCTGCCTACACTTGCTCTATTTCTTACTACGCCAACCCCAGGCCTGGAAGGACCGC
TTCATTGATGGTTTCATCTCTCTTGGAGCTCCCTGGGGTGGCTCCATCAAGCCCATGCTA
GTCTTGGCCTCAGGTGACAACCAGGGCATCCCGATCATGTCCAGCATCAAACTGAAAGAG
GAGCAGCGCATGACAACAACCTCCCCCTGGATGTTTCCCTCCAGCCACGTGTGGCCCGAG
GACCATGTGTTCATTTCCACCCCCAGCTTCAACTACACAAGCCATGACTTCCAGCGCTTC
TTTGCAGACCTGCACTTTGAGGAAGGCTGGTACATGTGGCTACAGTCACGTGACCTGCTG
GCAGGCCTCCCAGCGCCTGGTGTGGAAGTATACTGTCTGTATGGTGTGGGCCTGCCCACA
CCCCGCACCTACATCTTTGACCACGGCTTCCCCTACACGGACCCTGTGGATGTGCTCTAT
GAGGATGGTGATGACACTGTGGCTACGCGCAGCACCGAACTCTGTGCCCGCTGGCAGGGC
CGCCAACAGCAGCCTGTGCACCTGCTGCCTCTGCCTGGGACACAGCACCTCAATATGGTT
TTCAGTAACCAGACACTGGAGCACATCAATGCCATCCTGCTGGGCACCTACAGAAATAGC
ACCCCAGTATCCCCAAGCACCAGCACAGGGACCCTTCCCCCTGAATAAAGACTTCTTTGC
TGCTCTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGCTCAGGACTGCTTCACTGGGCACTAGGCACTGGGGCCGGAATGGGCCTGCCCGGC
TCCCCACGGCAGTGGGTCCTGCTGCTGCTGGGGCTGCTGCTCCCCCCTGCCGCCCCCTTC
TGGCTCCTCAATGTGCTCTTCCCCCCGCACACCACGCCCAAGGCTGAGCTCAGTAACCAC
ACACGGCCCGTCATCCTCGTACCTGGCTGCCTGGGGAATCAGCTGGAAGCCAAGCTGGAT
AAACCAGATGTGGTGAACTGGATGTGCTACCGCAAGACAGAGGACTTTTTCACCATTTGG
CTGGATCTCAATATGTTCCTACCCCTTGGGGTAGACTGCTGGATTGATAATACCAGGGTT
GTCTACAACCGCACCTCTGGGCGCGTGTCCAACGCACCCGGTGTAGAGATCCGTGTCCCC
GGCTTTGGCAAGACCTACTCTGTCGAGTACCTGGACAACAGCAAGTTGGCAGGTTATATG
CACACACTGGTACAAAACCTGGTCAATAATGGGTATGTGCGGGATGAGACCGTGCGGGCT
GCCCCCTACGACTGGCGGCTGGAGCCCAGCCAGCAGGAAGAGTACTACCTGAAGCTTGCT
GGGCTGGTGGAAGAAATGCATGCTACTTATGGAAAGCCGGTCTTCCTCATTGGGCACAGC
CTTGGCTGCCTACACTTGCTCTATTTCTTACTACGCCAACCCCAGGCCTGGAAGGACCGC
TTCATTGATGGTTTCATCTCTCTTGGAGCTCCCTGGGGTGGCTCCATCAAGCCCATGCTA
GTCTTGGCCTCAGGTGACAACCAGGGCATCCCGATCATGTCCAGCATCAAACTGAAAGAG
GAGCAGCGCATGACAACAACCTCCCCCTGGATGTTTCCCTCCAGCCACGTGTGGCCCGAG
GACCATGTGTTCATTTCCACCCCCAGCTTCAACTACACAAGCCATGACTTCCAGCGCTTC
TTTGCAGACCTGCACTTTGAGGAAGGCTGGTACATGTGGCTACAGTCACGTGACCTGCTG
GCAGGCCTCCCAGCGCCTGGTGTGGAAGTATACTGTCTGTATGGTGTGGGCCTGCCCACA
CCCCGCACCTACATCTTTGACCACGGCTTCCCCTACACGGACCCTGTGGATGTGCTCTAT
GAGGATGGTGATGACACTGTGGCTACGCGCAGCACCGAACTCTGTGCCCGCTGGCAGGGC
CGCCAACAGCAGCCTGTGCACCTGCTGCCTCTGCCTGGGACACAGCACCTCAATATGGTT
TTCAGTAACCAGACACTGGAGCACATCAATGCCATCCTGCTGGGCACCTACAGAAATAGC
ACCCCAGTATCCCCAAGCACCAGCACAGGGACCCTTCCCCCTGAATAAAGACTTCTTTGC
TGCTCTAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61886583|ref|XP_588202.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61886583|ref|XP_588202.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               40-159, - strand, RNAz p=0.850915
               

               
               984-1143, - strand, RNAz p=0.984073
               

               
               1184-1303, - strand, RNAz p=0.633103

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.850915
               

               
               984-1143, - strand, RNAz p=0.984073
               

               
               1184-1303, - strand, RNAz p=0.633103

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-199, gnl|bosTau2|chr18 (14932761-14932959)
               

               
               1-199, gnl|Hg17|chr16 (66535550-66535352)
               

               
               1-199, gnl|Mm7|chr8 (104542277-104542080)
               


               
               353-474, gnl|bosTau2|chr18 (14933911-14934032)
               

               
               353-474, gnl|Hg17|chr16 (66534385-66534263)
               

               
               353-474, gnl|Mm7|chr8 (104541112-104540991)
               


               
               785-1382, gnl|bosTau2|chr18 (14935430-14936029)
               

               
               785-1382, gnl|Hg17|chr16 (66531891-66531292)
               

               
               785-1382, gnl|Mm7|chr8 (104539003-104538416)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr18 (14932761-14932959)
               

               
               1-199, gnl|Hg17|chr16 (66535550-66535352)
               

               
               1-199, gnl|Mm7|chr8 (104542277-104542080)
               


               
               353-474, gnl|bosTau2|chr18 (14933911-14934032)
               

               
               353-474, gnl|Hg17|chr16 (66534385-66534263)
               

               
               353-474, gnl|Mm7|chr8 (104541112-104540991)
               


               
               785-1382, gnl|bosTau2|chr18 (14935430-14936029)
               

               
               785-1382, gnl|Hg17|chr16 (66531891-66531292)
               

               
               785-1382, gnl|Mm7|chr8 (104539003-104538416)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cli (1.06968)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.850915
	984-1143, - strand, RNAz p=0.984073
	1184-1303, - strand, RNAz p=0.633103

	1-199, gnl\|bosTau2\|chr18 (14932761-14932959)
	1-199, gnl\|Hg17\|chr16 (66535550-66535352)
	1-199, gnl\|Mm7\|chr8 (104542277-104542080)

	353-474, gnl\|bosTau2\|chr18 (14933911-14934032)
	353-474, gnl\|Hg17\|chr16 (66534385-66534263)
	353-474, gnl\|Mm7\|chr8 (104541112-104540991)

	785-1382, gnl\|bosTau2\|chr18 (14935430-14936029)
	785-1382, gnl\|Hg17\|chr16 (66531891-66531292)
	785-1382, gnl\|Mm7\|chr8 (104539003-104538416)

	cli (1.06968)
	fli (0.202881)
	ill (0.175593)
	jej (0.0989218)
	eje (0.0988338)