Ss1.1-Liv1-LVR010063A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGTGCTCAATCCTGCAATTGGGCCCGAAGGCCTCAGCGGCTGCTCCCGATTGAAAGG TGGAAGCGCTACCAAGGTCCTGCTGGAAACCCTGTTACTGGCAGCTCACAAGACTGTGGA CCGGGGCATCGAGGCATCTCCGAGATGCCTTCTGGAAATCCTGCGGACATTTGAGCGGGC TCATCAGGTGACCTATAGTCAAAGCGCCAAGATTGCCGCGCTGATGAAGCAAGCCAGCAC CAGCCTGGAGAAAAAAGGCCGAGTGCACCTGGTTGGCTGGCAGACTCTGGGCATCATTGC CATCATGGATGGAGTCGAGTGCATCCACAGTTTTGGTGCTGATTTCCGAGACATCCGTGG CTTTCTCATTGGTGATCACAGTGACATGTTTAACCAGAAGGCTGAGCTCATCAACCAGGG TTCCCATTTCACCTTCTCCCAGGAGGACTTCCTGACTTCCATCCTGCCGGCCCTCACGGA AGTTGACACTGTGGTCTTCATTTTCACCCTGGATGACAACCTGGCCGAGGTGCAGACCCT GGTGGAGCAGGTGAAAGAGAAGACCTCCAACATCCAGGCCTTGGCACACGGCACTGTGGG GCAGTCCCTGCCGACCCCTCTGAAGAAGCTCTTCCCTTCCATCATCAGCATCACGTGGCC ACTGCTTTTCTTCGAATATGAAGGGAACTTCATCCAGAAGTTCCAGCATGAGCTCAGCAC CAAGTGGGTGCTGGCACGGGGTTGAAAGCTTCGTGACTTCCTCCAAGCCAGCCAGGCAAG TTCTTGTGTTACCAGGTCACTAGTCAGAGTTTCCAAGTCAGTGGGCTACTGCATTCAGGT CTCTCTAGAAATACGCACAGTTCAGGATAGGCCACCAACCCCCCGACAGATACTCTTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGTGCTCAATCCTGCAATTGGGCCCGAAGGCCTCAGCGGCTGCTCCCGATTGAAAGG TGGAAGCGCTACCAAGGTCCTGCTGGAAACCCTGTTACTGGCAGCTCACAAGACTGTGGA CCGGGGCATCGAGGCATCTCCGAGATGCCTTCTGGAAATCCTGCGGACATTTGAGCGGGC TCATCAGGTGACCTATAGTCAAAGCGCCAAGATTGCCGCGCTGATGAAGCAAGCCAGCAC CAGCCTGGAGAAAAAAGGCCGAGTGCACCTGGTTGGCTGGCAGACTCTGGGCATCATTGC CATCATGGATGGAGTCGAGTGCATCCACAGTTTTGGTGCTGATTTCCGAGACATCCGTGG CTTTCTCATTGGTGATCACAGTGACATGTTTAACCAGAAGGCTGAGCTCATCAACCAGGG TTCCCATTTCACCTTCTCCCAGGAGGACTTCCTGACTTCCATCCTGCCGGCCCTCACGGA AGTTGACACTGTGGTCTTCATTTTCACCCTGGATGACAACCTGGCCGAGGTGCAGACCCT GGTGGAGCAGGTGAAAGAGAAGACCTCCAACATCCAGGCCTTGGCACACGGCACTGTGGG GCAGTCCCTGCCGACCCCTCTGAAGAAGCTCTTCCCTTCCATCATCAGCATCACGTGGCC ACTGCTTTTCTTCGAATATGAAGGGAACTTCATCCAGAAGTTCCAGCATGAGCTCAGCAC CAAGTGGGTGCTGGCACGGGGTTGAAAGCTTCGTGACTTCCTCCAAGCCAGCCAGGCAAG TTCTTGTGTTACCAGGTCACTAGTCAGAGTTTCCAAGTCAGTGGGCTACTGCATTCAGGT CTCTCTAGAAATACGCACAGTTCAGGATAGGCCACCAACCCCCCGACAGATACTCTTGGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 415-515, + strand, RNAz p=0.981054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-515, + strand, RNAz p=0.981054 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 241-343, gnl|bosTau2|chr11 (52973458-52973357) | |
| 241-343, gnl|canFam2|chr17 (24422777-24423192) | |
| 241-343, gnl|echTel1|scaffold_316515 (204133-204518) | |
| 241-343, gnl|hg17|chr2 (27641115-27641501) | |
| 241-343, gnl|Hg17|chr2 (27641303-27641405) | |
| 241-343, gnl|loxAfr1|scaffold_21422 (73879-73493) | |
| 241-343, gnl|mm7|chr5 (30339698-30340026) | |
| 241-343, gnl|Mm7|chr5 (30339834-30339936) | |
| 241-343, gnl|monDom2|scaffold_1 (148687012-148686501) | |
| 241-343, gnl|panTro1|chr12 (28585127-28585513) | |
| 241-343, gnl|rheMac2|chr13 (27501581-27501946) | |
| 415-515, gnl|bosTau2|chr11 (52972569-52972469) | |
| 415-515, gnl|canFam2|chr17 (24423857-24424006) | |
| 415-515, gnl|dasNov1|scaffold_23725 (9289-9436) | |
| 415-515, gnl|echTel1|scaffold_316515 (205367-205509) | |
| 415-515, gnl|hg17|chr2 (27642158-27642309) | |
| 415-515, gnl|Hg17|chr2 (27642195-27642295) | |
| 415-515, gnl|loxAfr1|scaffold_21422 (72806-72657) | |
| 415-515, gnl|mm7|chr5 (30340660-30340811) | |
| 415-515, gnl|Mm7|chr5 (30340697-30340797) | |
| 415-515, gnl|monDom2|scaffold_1 (148685653-148685528) | |
| 415-515, gnl|panTro1|chr12 (28586170-28586321) | |
| 415-515, gnl|rheMac2|chr13 (27502592-27502743) | |
| 415-515, gnl|tetNig1|chr3 (4221400-4221551) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-343, gnl|bosTau2|chr11 (52973458-52973357) | |
| 241-343, gnl|canFam2|chr17 (24422777-24423192) | |
| 241-343, gnl|echTel1|scaffold_316515 (204133-204518) | |
| 241-343, gnl|hg17|chr2 (27641115-27641501) | |
| 241-343, gnl|Hg17|chr2 (27641303-27641405) | |
| 241-343, gnl|loxAfr1|scaffold_21422 (73879-73493) | |
| 241-343, gnl|mm7|chr5 (30339698-30340026) | |
| 241-343, gnl|Mm7|chr5 (30339834-30339936) | |
| 241-343, gnl|monDom2|scaffold_1 (148687012-148686501) | |
| 241-343, gnl|panTro1|chr12 (28585127-28585513) | |
| 241-343, gnl|rheMac2|chr13 (27501581-27501946) | |
| 415-515, gnl|bosTau2|chr11 (52972569-52972469) | |
| 415-515, gnl|canFam2|chr17 (24423857-24424006) | |
| 415-515, gnl|dasNov1|scaffold_23725 (9289-9436) | |
| 415-515, gnl|echTel1|scaffold_316515 (205367-205509) | |
| 415-515, gnl|hg17|chr2 (27642158-27642309) | |
| 415-515, gnl|Hg17|chr2 (27642195-27642295) | |
| 415-515, gnl|loxAfr1|scaffold_21422 (72806-72657) | |
| 415-515, gnl|mm7|chr5 (30340660-30340811) | |
| 415-515, gnl|Mm7|chr5 (30340697-30340797) | |
| 415-515, gnl|monDom2|scaffold_1 (148685653-148685528) | |
| 415-515, gnl|panTro1|chr12 (28586170-28586321) | |
| 415-515, gnl|rheMac2|chr13 (27502592-27502743) | |
| 415-515, gnl|tetNig1|chr3 (4221400-4221551) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |