Ss1.1-Liv1-LVR010063B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTGGTGGAGGTTGTGGGTGCGGGTCGCCATGGCGGTGGACATCACACTGCTGTTCCG GGCCAGCGTCAAGACCGTGAAGACCCGCAACAAAGCGCTGGGAGTGGCGGTAGGCGGCGG GGTTGAGGGCAGCCGCGATGAGCTGTTCCGCCGGAGCCCCCGGCCCAAGGGCGACTTCTC CAGCCGCGCGCGCGAAGTGATTTCACACATTGGCAAGCTGAGAGATTTTCTTCTGGAACA CAGGAAAGATTATATTAACGCTTATAGCCACACCATGTCTGAATACGGGCGAATGACGGA CACGGAGCGAGACCAGATAGACCAGGATGCTCAGACGTTCATGAGGACCTGCTCAGAGGC CATCCAGCAGCTGCGAGCCCAAGCCCACAAGGAGGTGCCTTCCCAGCAAGTGAAGGAGCA CAGGAGTGCCGTTCTGGACTTCATCGAAGATTACTTAAAAAGAGTCTGTAAGCTCTACTC CGAACAGAGAGCCATCCGAGTTAAGCGAGTGGTGGACAAGAAAAGACTATCTAAGCTGGA ACCAGAACCAAATACAAAGGCAAGAGAATCCATGTCTCCTGAGAAAGTCTCACAGAGCCC TTCAAAAGACTCTGAAGAAAAACCTGCCACTGAAGAATATTCAGAAAAGATTCCGGCGGA AGCACAACCTGAATTGGGAACGTGGGGAGATGGCAAAGGTGAAGACGAACTGTCCCCAGA AGAAGTACAGATGTTTGAGCAAGAAAACCAGCGCCTGATCGGGGAGATGAACAGCCTGTT TGACGAAGTGAGGCAAATCGAAGGCAAAGTGGTTGAAATTTCCAGACTCCAGGAGATATT CACAGAGAAGGTTTTACAACAGGAAGCCGAGATTGACAGCATCCACCAGCTGGTAGTGGG AGCCACCGAGAACATCAAGGAGGGCAACGAAGACATCAGGGAGGCCATCAAGAACAACGC CGGCTTCCGCGTGTGGGTGCTCTTCTTCCTGGTGATGTGCTCCTTCTCCCTGCTCTTCCT CGACTGGTACGACAGCTAGGCCGCCACTCCCGCCAGACGGGAGCCCCAGCATCGCAGCCA CGCGGACTCTCTAGGGACACCTGGACCTGTGGGCTTGAGCCCATTAGTAGCTGAAAAAGA ATCTACGCAATTGAACGCGGTCTGCGTGGTGGTCCTGCGGCCGGACGGGAGGGGGGAGGG CGGCCATTCCTACACCTGCGGGGCGCGGGGACGGCAGGCCTCTCCCCCGGCACCGCCGCC TTGGGCTCCACCCTCCCGGAGGCCGCAGGGAGACTGCTGGCCCGCAGCCCTGCTCGGCGG AGGACGTTTGTTTGCTGCGGCTTCTTGTCTGCCCGGGCAGCTGATACGCAGCCTTGCTGT GCTGGAGCCGACAGCCCACCCTTGCCTTGTTAGCCCAGGAGATGCAGTTAGAGCACCGCC TGTACCGCTGGTAAGTCCAAGTGCAGAAAGTCCCTGCACCCCACCTGCCTCCGGTCGGGA AAGATATGGGGGATGGGGCCGGGGGACGCGGCTCCCCCGAGAACTGCCTCCCCCCACCAC CGTCCTGACCAGAGGGCAGGGCCTGACTTCGTGCCACTGGGGCCCATGGAGCTCTTGGCC GGAGAAGGACCTGGGCCTGAGGCACCGGCGGCCACGCGTGTGCAGAAAACAGCTGGTGTT GGGGACCCCACAGCCGGGGAGCGGGGGCTCTACACAGACGGTCCCAGGGCGCCGCAGCGA TCCTTGTGTTCTTTGTTAAGAGAGTGAAAGTGTCAGAAGTTACATGGGGATGAGTTTACA GCCGGTGAAATACACATCTACTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTGGTGGAGGTTGTGGGTGCGGGTCGCCATGGCGGTGGACATCACACTGCTGTTCCG GGCCAGCGTCAAGACCGTGAAGACCCGCAACAAAGCGCTGGGAGTGGCGGTAGGCGGCGG GGTTGAGGGCAGCCGCGATGAGCTGTTCCGCCGGAGCCCCCGGCCCAAGGGCGACTTCTC CAGCCGCGCGCGCGAAGTGATTTCACACATTGGCAAGCTGAGAGATTTTCTTCTGGAACA CAGGAAAGATTATATTAACGCTTATAGCCACACCATGTCTGAATACGGGCGAATGACGGA CACGGAGCGAGACCAGATAGACCAGGATGCTCAGACGTTCATGAGGACCTGCTCAGAGGC CATCCAGCAGCTGCGAGCCCAAGCCCACAAGGAGGTGCCTTCCCAGCAAGTGAAGGAGCA CAGGAGTGCCGTTCTGGACTTCATCGAAGATTACTTAAAAAGAGTCTGTAAGCTCTACTC CGAACAGAGAGCCATCCGAGTTAAGCGAGTGGTGGACAAGAAAAGACTATCTAAGCTGGA ACCAGAACCAAATACAAAGGCAAGAGAATCCATGTCTCCTGAGAAAGTCTCACAGAGCCC TTCAAAAGACTCTGAAGAAAAACCTGCCACTGAAGAATATTCAGAAAAGATTCCGGCGGA AGCACAACCTGAATTGGGAACGTGGGGAGATGGCAAAGGTGAAGACGAACTGTCCCCAGA AGAAGTACAGATGTTTGAGCAAGAAAACCAGCGCCTGATCGGGGAGATGAACAGCCTGTT TGACGAAGTGAGGCAAATCGAAGGCAAAGTGGTTGAAATTTCCAGACTCCAGGAGATATT CACAGAGAAGGTTTTACAACAGGAAGCCGAGATTGACAGCATCCACCAGCTGGTAGTGGG AGCCACCGAGAACATCAAGGAGGGCAACGAAGACATCAGGGAGGCCATCAAGAACAACGC CGGCTTCCGCGTGTGGGTGCTCTTCTTCCTGGTGATGTGCTCCTTCTCCCTGCTCTTCCT CGACTGGTACGACAGCTAGGCCGCCACTCCCGCCAGACGGGAGCCCCAGCATCGCAGCCA CGCGGACTCTCTAGGGACACCTGGACCTGTGGGCTTGAGCCCATTAGTAGCTGAAAAAGA ATCTACGCAATTGAACGCGGTCTGCGTGGTGGTCCTGCGGCCGGACGGGAGGGGGGAGGG CGGCCATTCCTACACCTGCGGGGCGCGGGGACGGCAGGCCTCTCCCCCGGCACCGCCGCC TTGGGCTCCACCCTCCCGGAGGCCGCAGGGAGACTGCTGGCCCGCAGCCCTGCTCGGCGG AGGACGTTTGTTTGCTGCGGCTTCTTGTCTGCCCGGGCAGCTGATACGCAGCCTTGCTGT GCTGGAGCCGACAGCCCACCCTTGCCTTGTTAGCCCAGGAGATGCAGTTAGAGCACCGCC TGTACCGCTGGTAAGTCCAAGTGCAGAAAGTCCCTGCACCCCACCTGCCTCCGGTCGGGA AAGATATGGGGGATGGGGCCGGGGGACGCGGCTCCCCCGAGAACTGCCTCCCCCCACCAC CGTCCTGACCAGAGGGCAGGGCCTGACTTCGTGCCACTGGGGCCCATGGAGCTCTTGGCC GGAGAAGGACCTGGGCCTGAGGCACCGGCGGCCACGCGTGTGCAGAAAACAGCTGGTGTT GGGGACCCCACAGCCGGGGAGCGGGGGCTCTACACAGACGGTCCCAGGGCGCCGCAGCGA TCCTTGTGTTCTTTGTTAAGAGAGTGAAAGTGTCAGAAGTTACATGGGGATGAGTTTACA GCCGGTGAAATACACATCTACTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 530-644, - strand, RNAz p=0.576525 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 530-644, - strand, RNAz p=0.576525 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 16-199, gnl|bosTau2|chr6 (60897536-60897719) | |
| 16-199, gnl|Hg17|chr4 (4661779-4661596) | |
| 16-199, gnl|Mm7|chr5 (37120714-37120895) | |
| 530-644, gnl|bosTau2|chr6 (60995887-60996001) | |
| 530-644, gnl|canFam2|chr3 (72681286-72681176) | |
| 530-644, gnl|canFam2|chr3 (72681151-72681293) | |
| 530-644, gnl|echTel1|scaffold_172424 (1363-1253) | |
| 530-644, gnl|echTel1|scaffold_172424 (1245-1372) | |
| 530-644, gnl|galGal2|chr4 (78925754-78925898) | |
| 530-644, gnl|hg17|chr17 (25420273-25420381) | |
| 530-644, gnl|hg17|chr4 (4558172-4558316) | |
| 530-644, gnl|Hg17|chr4 (4558307-4558193) | |
| 530-644, gnl|loxAfr1|scaffold_10986 (36976-36866) | |
| 530-644, gnl|loxAfr1|scaffold_10986 (36841-36985) | |
| 530-644, gnl|mm7|chr5 (37197485-37197588) | |
| 530-644, gnl|mm7|chr5 (37197616-37197475) | |
| 530-644, gnl|Mm7|chr5 (37197482-37197593) | |
| 530-644, gnl|oryCun1|scaffold_127304 (1052-1196) | |
| 530-644, gnl|oryCun1|scaffold_305 (1818-1708) | |
| 530-644, gnl|panTro1|chr19 (28778929-28779037) | |
| 530-644, gnl|panTro1|chr3 (4567068-4567212) | |
| 530-644, gnl|rheMac2|chr16 (25305499-25305606) | |
| 530-644, gnl|rheMac2|chr5 (4321069-4320925) | |
| 530-644, gnl|rn3|chr14 (77973380-77973278) | |
| 530-644, gnl|rn3|chr14 (77973248-77973389) | |
| 942-1276, gnl|bosTau2|chr6 (61017212-61017563) | |
| 942-1276, gnl|Hg17|chr4 (4539930-4539492) | |
| 1638-1822, gnl|bosTau2|chr6 (61018007-61018193) | |
| 1638-1822, gnl|Hg17|chr4 (4538972-4538773) | |
| 1638-1822, gnl|Mm7|chr5 (37218503-37218676) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-199, gnl|bosTau2|chr6 (60897536-60897719) | |
| 16-199, gnl|Hg17|chr4 (4661779-4661596) | |
| 16-199, gnl|Mm7|chr5 (37120714-37120895) | |
| 530-644, gnl|bosTau2|chr6 (60995887-60996001) | |
| 530-644, gnl|canFam2|chr3 (72681286-72681176) | |
| 530-644, gnl|canFam2|chr3 (72681151-72681293) | |
| 530-644, gnl|echTel1|scaffold_172424 (1363-1253) | |
| 530-644, gnl|echTel1|scaffold_172424 (1245-1372) | |
| 530-644, gnl|galGal2|chr4 (78925754-78925898) | |
| 530-644, gnl|hg17|chr17 (25420273-25420381) | |
| 530-644, gnl|hg17|chr4 (4558172-4558316) | |
| 530-644, gnl|Hg17|chr4 (4558307-4558193) | |
| 530-644, gnl|loxAfr1|scaffold_10986 (36976-36866) | |
| 530-644, gnl|loxAfr1|scaffold_10986 (36841-36985) | |
| 530-644, gnl|mm7|chr5 (37197485-37197588) | |
| 530-644, gnl|mm7|chr5 (37197616-37197475) | |
| 530-644, gnl|Mm7|chr5 (37197482-37197593) | |
| 530-644, gnl|oryCun1|scaffold_127304 (1052-1196) | |
| 530-644, gnl|oryCun1|scaffold_305 (1818-1708) | |
| 530-644, gnl|panTro1|chr19 (28778929-28779037) | |
| 530-644, gnl|panTro1|chr3 (4567068-4567212) | |
| 530-644, gnl|rheMac2|chr16 (25305499-25305606) | |
| 530-644, gnl|rheMac2|chr5 (4321069-4320925) | |
| 530-644, gnl|rn3|chr14 (77973380-77973278) | |
| 530-644, gnl|rn3|chr14 (77973248-77973389) | |
| 942-1276, gnl|bosTau2|chr6 (61017212-61017563) | |
| 942-1276, gnl|Hg17|chr4 (4539930-4539492) | |
| 1638-1822, gnl|bosTau2|chr6 (61018007-61018193) | |
| 1638-1822, gnl|Hg17|chr4 (4538972-4538773) | |
| 1638-1822, gnl|Mm7|chr5 (37218503-37218676) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| csp (0.161186) | |
| cly (0.120642) |