Non-Coding RNA Search

Ss1.1-Liv1-LVR010063B11.5

Sequence:


               
               GAGCGCAAGATGGCGCTGCCCTTTGCACGTCCACTGTGCCTGTGCCGCTGGGGAGCCAAA
AGGTTAGGGATTGCTGCCGCGGAAACCCGCAGAGGCGTCAGTTTCAAACTGGAAGAAAAG
ACAGCCCACAGCAGCTTGGCCCTCTTCAAAAGTGACACAGGTGTCAAATATGGCATGGTG
GGATTGGAGCCCACAAAATTGGCCCTGAATGTGGAGCGCTTCCGGGAGTGGGCAGTGGTG
TTGGCAGACACAGCGATCACCAGTGGCAGACACTACTGGGAGGTGACAGTGAAGCGCTCA
CAGCAATTCCGGATAGGAGTGGCAGATGTGGACATGTCCCGGGATAGCTGCATCGGTGTT
GACGACCGTTCCTGGGTGTTCACCTATGCCCAGCGCAAGTGGCACACCATGTTGGCCAAC
GAGAAGGCCCCTATTGAGGGCATTGGGCAGCCAGAGAAGGTGGGGCTGCTGCTGGAGTAT
GAGGCCCAGAAGCTGAGCCTGGTGGATGTGAACCGGGTTGCTGTGGTCCATACACTACAG
ACAGATTTCCGGGGTCCAGTGGTGCCTGCCTTTGCCCTTTGGGATGGAGAACTGCTGACT
CACTCAGGGCTTGAGGTACCAGAAGGCCTCTAATATGTCCATCACTGAAGTCCCTAATCA
TGCTCTTGGCCAGCCTCCTGCTCAAAAAGTGTCCGAAACCTTTTAATTGTGGCCCAAGCA
AGTACCAGCTCCCACCTGTCACTAGTTCAGTGACAGGTCCTCTGTGCAATATCTCAGTCG
TCTTTGTTTCCCGTCCTGTGAAAGGTAGGCATACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGCAAGATGGCGCTGCCCTTTGCACGTCCACTGTGCCTGTGCCGCTGGGGAGCCAAA
AGGTTAGGGATTGCTGCCGCGGAAACCCGCAGAGGCGTCAGTTTCAAACTGGAAGAAAAG
ACAGCCCACAGCAGCTTGGCCCTCTTCAAAAGTGACACAGGTGTCAAATATGGCATGGTG
GGATTGGAGCCCACAAAATTGGCCCTGAATGTGGAGCGCTTCCGGGAGTGGGCAGTGGTG
TTGGCAGACACAGCGATCACCAGTGGCAGACACTACTGGGAGGTGACAGTGAAGCGCTCA
CAGCAATTCCGGATAGGAGTGGCAGATGTGGACATGTCCCGGGATAGCTGCATCGGTGTT
GACGACCGTTCCTGGGTGTTCACCTATGCCCAGCGCAAGTGGCACACCATGTTGGCCAAC
GAGAAGGCCCCTATTGAGGGCATTGGGCAGCCAGAGAAGGTGGGGCTGCTGCTGGAGTAT
GAGGCCCAGAAGCTGAGCCTGGTGGATGTGAACCGGGTTGCTGTGGTCCATACACTACAG
ACAGATTTCCGGGGTCCAGTGGTGCCTGCCTTTGCCCTTTGGGATGGAGAACTGCTGACT
CACTCAGGGCTTGAGGTACCAGAAGGCCTCTAATATGTCCATCACTGAAGTCCCTAATCA
TGCTCTTGGCCAGCCTCCTGCTCAAAAAGTGTCCGAAACCTTTTAATTGTGGCCCAAGCA
AGTACCAGCTCCCACCTGTCACTAGTTCAGTGACAGGTCCTCTGTGCAATATCTCAGTCG
TCTTTGTTTCCCGTCCTGTGAAAGGTAGGCATACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61866636|ref|XP_616750.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61866636|ref|XP_616750.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               541-815, gnl|bosTau2|chr20 (25107091-25106827)
               

               
               541-815, gnl|Hg17|chr12 (55149536-55149803)
               

               
               541-815, gnl|Mm7|chr10 (127712442-127712181)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               541-815, gnl|bosTau2|chr20 (25107091-25106827)
               

               
               541-815, gnl|Hg17|chr12 (55149536-55149803)
               

               
               541-815, gnl|Mm7|chr10 (127712442-127712181)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cje (0.165235)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               eep (0.122564)

	541-815, gnl\|bosTau2\|chr20 (25107091-25106827)
	541-815, gnl\|Hg17\|chr12 (55149536-55149803)
	541-815, gnl\|Mm7\|chr10 (127712442-127712181)