Ss1.1-Liv1-LVR010063D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCTCCCTGCCGCGCCGGCAAAGCCGGCTTCCCCTCGGTCTCTCATGAATATTGAGC GGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCCGAGGCTCGCCATATTGTGCGGC GGCGCCGGCGGCCGCGGCGCCTTCTTCCCGTGTCTCACTCCGGCCGCGGCCAGCGGAGCC CCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGACAAATGGAACTCAACCATT AAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAACACCTCAGGAGGCAATAAC CGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACAGTGAACTAATGTGCCCGAT TTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGTGTTTACATCGTTTTTGTGC AGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAATGCCCTACCTGTCGGAAAAA GCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTGATGCACTCATCAGCAAAAT TTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAGTGTTAGCGAGGATCAACAA GCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAGGACTGAAGATACAGGCCAT GAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATGGTAGTGGAGCAGAAGATAA TGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCAATCAGGAAGCAGGACCTAG CAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGCTTGATAATAACAATGCAGC AGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTGAGTTAGTATTCAGGCCTCA TCCCACACTTATGGAGAAAGATGACAGTGCACAGACAAGATACATAAAGACTTCAGGTAA TGCCACTGTTGATCATTTATCCAAGTATCTGGCTGTGAGGTTAGCTTTAGAAGAACTTCG GAGCAAAGGAGAATCAAACCAGATGAATCTTGATACAGCCAGTGAGAAGCAGTATACCAT TTACATAGCAACAGCCAGTGGCCAGTTCACTGTGTTAAATGGCTCTTTTTCTTTGGAATT GGTCAGTGAGAAATACTGGAAAGTGAACAAACCCATGGAACTTTATTACGCACCCACAAA GGAGCACAAATGAGCTTTTACTAACACCAGTTCTGAGAATGAACTTTTTTATAGCCTATT TCTTTAATATTAAAGATGTTCCATCATTACTTTTATGGACAGAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCTCCCTGCCGCGCCGGCAAAGCCGGCTTCCCCTCGGTCTCTCATGAATATTGAGC GGCCCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCCGAGGCTCGCCATATTGTGCGGC GGCGCCGGCGGCCGCGGCGCCTTCTTCCCGTGTCTCACTCCGGCCGCGGCCAGCGGAGCC CCGGGCTGGGGCGGGAGCCGCAATGTCTCAGGCTGTGCAGACAAATGGAACTCAACCATT AAGCAAAACATGGGAACTCAGTTTATATGAATTACAACGAACACCTCAGGAGGCAATAAC CGATGGCTTGGAAATTGTGGTTTCACCTCGAAGTCTACACAGTGAACTAATGTGCCCGAT TTGTTTGGACATGTTGAAGAATACCATGACTACAAAGGAGTGTTTACATCGTTTTTGTGC AGACTGCATTATCACAGCCCTCAGAAGTGGCAATAAAGAATGCCCTACCTGTCGGAAAAA GCTAGTTTCCAAAAGATCACTAAGACCAGACCCAAACTTTGATGCACTCATCAGCAAAAT TTATCCAAGTCGTGATGAGTATGAAGCTCATCAAGAAAGAGTGTTAGCGAGGATCAACAA GCACAATAATCAGCAAGCACTCAGTCACAGCATTGAGGAAGGACTGAAGATACAGGCCAT GAACAGATTACAGCGAGGCAAGAAACAGCAGATTGAAAATGGTAGTGGAGCAGAAGATAA TGGTGACAGTTCTCACTGTAGTAATGCATCCACGCATAGCAATCAGGAAGCAGGACCTAG CAACAAACGGACCAAAACATCTGATGATTCTGGGCTTGAGCTTGATAATAACAATGCAGC AGTGGCAATTGATCCAGTCATGGATGGTGCTAGTGAAATTGAGTTAGTATTCAGGCCTCA TCCCACACTTATGGAGAAAGATGACAGTGCACAGACAAGATACATAAAGACTTCAGGTAA TGCCACTGTTGATCATTTATCCAAGTATCTGGCTGTGAGGTTAGCTTTAGAAGAACTTCG GAGCAAAGGAGAATCAAACCAGATGAATCTTGATACAGCCAGTGAGAAGCAGTATACCAT TTACATAGCAACAGCCAGTGGCCAGTTCACTGTGTTAAATGGCTCTTTTTCTTTGGAATT GGTCAGTGAGAAATACTGGAAAGTGAACAAACCCATGGAACTTTATTACGCACCCACAAA GGAGCACAAATGAGCTTTTACTAACACCAGTTCTGAGAATGAACTTTTTTATAGCCTATT TCTTTAATATTAAAGATGTTCCATCATTACTTTTATGGACAGAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 91 entry(ies) | More info |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
| 287-450, gnl|bosTau2|chr16 (48638759-48638596) | |
| 287-450, gnl|canFam2|chr7 (21237304-21237146) | |
| 287-450, gnl|canFam2|chr7 (21237121-21237323) | |
| 287-450, gnl|canFam2|chr7 (21237305-21237166) | |
| 287-450, gnl|danRer3|chr2 (15165025-15164871) | |
| 287-450, gnl|danRer3|chr2 (15164861-15165047) | |
| 287-450, gnl|danRer3|chr2 (15165025-15164891) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1544-1702) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1727-1524) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1543-1682) | |
| 287-450, gnl|echTel1|scaffold_51630 (737-579) | |
| 287-450, gnl|echTel1|scaffold_51630 (569-737) | |
| 287-450, gnl|echTel1|scaffold_51630 (735-599) | |
| 287-450, gnl|fr1|chrUn (183081036-183081194) | |
| 287-450, gnl|fr1|chrUn (183081199-183081029) | |
| 287-450, gnl|fr1|chrUn (183081036-183081174) | |
| 287-450, gnl|galGal2|chr8 (8027448-8027289) | |
| 287-450, gnl|galGal2|chr8 (8027264-8027454) | |
| 287-450, gnl|galGal2|chr8 (8027449-8027310) | |
| 287-450, gnl|hg17|chr1 (181792345-181792550) | |
| 287-450, gnl|Hg17|chr1 (181792365-181792528) | |
| 287-450, gnl|hg17|chr8 (54050986-54051142) | |
| 287-450, gnl|hg17|chr9 (6659748-6659887) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4682-4524) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4520-4682) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4683-4544) | |
| 287-450, gnl|mm7|chr1 (151409968-151410126) | |
| 287-450, gnl|mm7|chr1 (151410143-151409948) | |
| 287-450, gnl|mm7|chr1 (151409967-151410106) | |
| 287-450, gnl|Mm7|chr1 (151410129-151409966) | |
| 287-450, gnl|monDom2|scaffold_16 (39283718-39283560) | |
| 287-450, gnl|monDom2|scaffold_16 (39283517-39283735) | |
| 287-450, gnl|monDom2|scaffold_16 (39283719-39283580) | |
| 287-450, gnl|oryCun1|scaffold_123707 (6086-6287) | |
| 287-450, gnl|oryCun1|scaffold_126709 (9117-8965) | |
| 287-450, gnl|oryCun1|scaffold_126709 (9113-8985) | |
| 287-450, gnl|panTro1|chr1 (164359140-164359345) | |
| 287-450, gnl|panTro1|chr11_random (35797916-35797777) | |
| 287-450, gnl|panTro1|chr7_random (28501447-28501603) | |
| 287-450, gnl|rheMac2|chr1 (185601229-185601024) | |
| 287-450, gnl|rheMac2|chr15 (70482022-70481883) | |
| 287-450, gnl|rheMac2|chr8 (55544371-55544529) | |
| 287-450, gnl|rn3|chr13 (66365982-66366140) | |
| 287-450, gnl|rn3|chr13 (66366161-66365962) | |
| 287-450, gnl|rn3|chr13 (66365981-66366120) | |
| 287-450, gnl|tetNig1|chrUn_random (18950963-18951117) | |
| 287-450, gnl|tetNig1|chrUn_random (18951127-18950921) | |
| 287-450, gnl|tetNig1|chrUn_random (18950963-18951097) | |
| 287-450, gnl|xenTro1|scaffold_81 (657821-657979) | |
| 287-450, gnl|xenTro1|scaffold_81 (657992-657803) | |
| 287-450, gnl|xenTro1|scaffold_81 (657820-657959) | |
| 469-1308, gnl|bosTau2|chr1 (94530271-94531098) | |
| 469-1308, gnl|Hg17|chr9 (6659724-6658932) | |
| 469-1308, gnl|Mm7|chr1 (151409431-151404324) | |
| 665-942, gnl|bosTau2|chr16 (48635584-48635307) | |
| 665-942, gnl|canFam2|chr7 (21242607-21242438) | |
| 665-942, gnl|danRer3|chr2 (15167547-15167378) | |
| 665-942, gnl|dasNov1|scaffold_8871 (947-1116) | |
| 665-942, gnl|echTel1|scaffold_51630 (1232-1058) | |
| 665-942, gnl|fr1|chrUn (183079602-183079770) | |
| 665-942, gnl|galGal2|chr8 (8029685-8029516) | |
| 665-942, gnl|Hg17|chr1 (181798859-181799136) | |
| 665-942, gnl|hg17|chr8 (54050334-54050503) | |
| 665-942, gnl|loxAfr1|scaffold_20040 (5172-5002) | |
| 665-942, gnl|mm7|chr1 (151406167-151406336) | |
| 665-942, gnl|Mm7|chr1 (151406440-151406163) | |
| 665-942, gnl|monDom2|scaffold_16 (39297328-39297159) | |
| 665-942, gnl|oryCun1|scaffold_126709 (9558-9396) | |
| 665-942, gnl|panTro1|chr7_random (28500797-28500966) | |
| 665-942, gnl|rheMac2|chr8 (55543716-55543885) | |
| 665-942, gnl|rn3|chr13 (66362102-66362271) | |
| 665-942, gnl|xenTro1|scaffold_81 (656049-656218) | |
| 1112-1304, gnl|bosTau2|chr16 (48634063-48633871) | |
| 1112-1304, gnl|canFam2|chr7 (21243798-21243933) | |
| 1112-1304, gnl|danRer3|chr2 (15170209-15170335) | |
| 1112-1304, gnl|dasNov1|scaffold_8871 (141-4) | |
| 1112-1304, gnl|echTel1|scaffold_215119 (5954-5819) | |
| 1112-1304, gnl|fr1|chrUn (183079207-183079106) | |
| 1112-1304, gnl|galGal2|chr8 (8031931-8032066) | |
| 1112-1304, gnl|hg17|chr1 (181800977-181801110) | |
| 1112-1304, gnl|Hg17|chr1 (181800989-181801179) | |
| 1112-1304, gnl|loxAfr1|scaffold_20040 (5345-5467) | |
| 1112-1304, gnl|mm7|chr1 (151404525-151404392) | |
| 1112-1304, gnl|Mm7|chr1 (151404511-151404323) | |
| 1112-1304, gnl|monDom2|scaffold_16 (39301026-39301160) | |
| 1112-1304, gnl|oryCun1|scaffold_123707 (16109-16242) | |
| 1112-1304, gnl|panTro1|chr1 (164367882-164368015) | |
| 1112-1304, gnl|rheMac2|chr1 (185592702-185592583) | |
| 1112-1304, gnl|rn3|chr13 (66360809-66360677) | |
| 1112-1304, gnl|tetNig1|chrUn_random (18948871-18948766) | |
| 1112-1304, gnl|xenTro1|scaffold_81 (654562-654447) |
| Aligned organism(s): 91 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 287-450, gnl|bosTau2|chr16 (48638759-48638596) | |
| 287-450, gnl|canFam2|chr7 (21237304-21237146) | |
| 287-450, gnl|canFam2|chr7 (21237121-21237323) | |
| 287-450, gnl|canFam2|chr7 (21237305-21237166) | |
| 287-450, gnl|danRer3|chr2 (15165025-15164871) | |
| 287-450, gnl|danRer3|chr2 (15164861-15165047) | |
| 287-450, gnl|danRer3|chr2 (15165025-15164891) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1544-1702) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1727-1524) | |
| 287-450, gnl|dasNov1|scaffold_126893 (1543-1682) | |
| 287-450, gnl|echTel1|scaffold_51630 (737-579) | |
| 287-450, gnl|echTel1|scaffold_51630 (569-737) | |
| 287-450, gnl|echTel1|scaffold_51630 (735-599) | |
| 287-450, gnl|fr1|chrUn (183081036-183081194) | |
| 287-450, gnl|fr1|chrUn (183081199-183081029) | |
| 287-450, gnl|fr1|chrUn (183081036-183081174) | |
| 287-450, gnl|galGal2|chr8 (8027448-8027289) | |
| 287-450, gnl|galGal2|chr8 (8027264-8027454) | |
| 287-450, gnl|galGal2|chr8 (8027449-8027310) | |
| 287-450, gnl|hg17|chr1 (181792345-181792550) | |
| 287-450, gnl|Hg17|chr1 (181792365-181792528) | |
| 287-450, gnl|hg17|chr8 (54050986-54051142) | |
| 287-450, gnl|hg17|chr9 (6659748-6659887) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4682-4524) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4520-4682) | |
| 287-450, gnl|loxAfr1|scaffold_20040 (4683-4544) | |
| 287-450, gnl|mm7|chr1 (151409968-151410126) | |
| 287-450, gnl|mm7|chr1 (151410143-151409948) | |
| 287-450, gnl|mm7|chr1 (151409967-151410106) | |
| 287-450, gnl|Mm7|chr1 (151410129-151409966) | |
| 287-450, gnl|monDom2|scaffold_16 (39283718-39283560) | |
| 287-450, gnl|monDom2|scaffold_16 (39283517-39283735) | |
| 287-450, gnl|monDom2|scaffold_16 (39283719-39283580) | |
| 287-450, gnl|oryCun1|scaffold_123707 (6086-6287) | |
| 287-450, gnl|oryCun1|scaffold_126709 (9117-8965) | |
| 287-450, gnl|oryCun1|scaffold_126709 (9113-8985) | |
| 287-450, gnl|panTro1|chr1 (164359140-164359345) | |
| 287-450, gnl|panTro1|chr11_random (35797916-35797777) | |
| 287-450, gnl|panTro1|chr7_random (28501447-28501603) | |
| 287-450, gnl|rheMac2|chr1 (185601229-185601024) | |
| 287-450, gnl|rheMac2|chr15 (70482022-70481883) | |
| 287-450, gnl|rheMac2|chr8 (55544371-55544529) | |
| 287-450, gnl|rn3|chr13 (66365982-66366140) | |
| 287-450, gnl|rn3|chr13 (66366161-66365962) | |
| 287-450, gnl|rn3|chr13 (66365981-66366120) | |
| 287-450, gnl|tetNig1|chrUn_random (18950963-18951117) | |
| 287-450, gnl|tetNig1|chrUn_random (18951127-18950921) | |
| 287-450, gnl|tetNig1|chrUn_random (18950963-18951097) | |
| 287-450, gnl|xenTro1|scaffold_81 (657821-657979) | |
| 287-450, gnl|xenTro1|scaffold_81 (657992-657803) | |
| 287-450, gnl|xenTro1|scaffold_81 (657820-657959) | |
| 469-1308, gnl|bosTau2|chr1 (94530271-94531098) | |
| 469-1308, gnl|Hg17|chr9 (6659724-6658932) | |
| 469-1308, gnl|Mm7|chr1 (151409431-151404324) | |
| 665-942, gnl|bosTau2|chr16 (48635584-48635307) | |
| 665-942, gnl|canFam2|chr7 (21242607-21242438) | |
| 665-942, gnl|danRer3|chr2 (15167547-15167378) | |
| 665-942, gnl|dasNov1|scaffold_8871 (947-1116) | |
| 665-942, gnl|echTel1|scaffold_51630 (1232-1058) | |
| 665-942, gnl|fr1|chrUn (183079602-183079770) | |
| 665-942, gnl|galGal2|chr8 (8029685-8029516) | |
| 665-942, gnl|Hg17|chr1 (181798859-181799136) | |
| 665-942, gnl|hg17|chr8 (54050334-54050503) | |
| 665-942, gnl|loxAfr1|scaffold_20040 (5172-5002) | |
| 665-942, gnl|mm7|chr1 (151406167-151406336) | |
| 665-942, gnl|Mm7|chr1 (151406440-151406163) | |
| 665-942, gnl|monDom2|scaffold_16 (39297328-39297159) | |
| 665-942, gnl|oryCun1|scaffold_126709 (9558-9396) | |
| 665-942, gnl|panTro1|chr7_random (28500797-28500966) | |
| 665-942, gnl|rheMac2|chr8 (55543716-55543885) | |
| 665-942, gnl|rn3|chr13 (66362102-66362271) | |
| 665-942, gnl|xenTro1|scaffold_81 (656049-656218) | |
| 1112-1304, gnl|bosTau2|chr16 (48634063-48633871) | |
| 1112-1304, gnl|canFam2|chr7 (21243798-21243933) | |
| 1112-1304, gnl|danRer3|chr2 (15170209-15170335) | |
| 1112-1304, gnl|dasNov1|scaffold_8871 (141-4) | |
| 1112-1304, gnl|echTel1|scaffold_215119 (5954-5819) | |
| 1112-1304, gnl|fr1|chrUn (183079207-183079106) | |
| 1112-1304, gnl|galGal2|chr8 (8031931-8032066) | |
| 1112-1304, gnl|hg17|chr1 (181800977-181801110) | |
| 1112-1304, gnl|Hg17|chr1 (181800989-181801179) | |
| 1112-1304, gnl|loxAfr1|scaffold_20040 (5345-5467) | |
| 1112-1304, gnl|mm7|chr1 (151404525-151404392) | |
| 1112-1304, gnl|Mm7|chr1 (151404511-151404323) | |
| 1112-1304, gnl|monDom2|scaffold_16 (39301026-39301160) | |
| 1112-1304, gnl|oryCun1|scaffold_123707 (16109-16242) | |
| 1112-1304, gnl|panTro1|chr1 (164367882-164368015) | |
| 1112-1304, gnl|rheMac2|chr1 (185592702-185592583) | |
| 1112-1304, gnl|rn3|chr13 (66360809-66360677) | |
| 1112-1304, gnl|tetNig1|chrUn_random (18948871-18948766) | |
| 1112-1304, gnl|xenTro1|scaffold_81 (654562-654447) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| mgm (0.360685) | |
| cte (0.29274) | |
| spl (0.286369) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ret (0.128733) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.360685) | |
| cte (0.29274) | |
| spl (0.286369) | |
| nms (0.213858) | |
| tes (0.207814) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ret (0.128733) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |