Ss1.1-Liv1-LVR010065A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTTGGGGGATTGTCGCCGCTATCGCGGCTTTGGACGCGTGGAACCCCCTGCTGTAGT CTTCAAGTGTAGTGTTAGCTGCTGCCATGAGCTACACAGGCTTTGTCCAGGGATCTGAAA CCACTTTGCAGTCAACGTACTCAGACACAAGTGCTCAGCCTACCTGTGATTATGGATATG GAACTTGGAACTCTGGGACAAACAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATG GCCAGGATAACACCACCAACTATGGGTATGGTATGGCCACTTCAAACTCTTGGGAAATGC CTAGCTCTGACACAAATGCAAACCCTAGTGCCATGGGTAGTGCCAGTGCCGATTCCGTTT TGTCCAGAATTAACCAGCGCTTAGATATGGTTCCGCACTTGGAGACAGATGTGATACAAG GAGGCGTGTACAGCTCAGGTGGAGAAAGATATGATTCCTACGAGGCCTGTGACTCAAGGG CTGTCCTGAGCGAGCGTGATCTGTACCGGTCAGGCTATGACTACGGCGAGCTTGACCCTG AGATGGAAATGGCCTACGAGGGCCAGTACGATGCCTACCGCGACCAGTTCCGCATGCGTG GCGGCGACACCTTTGGCCCGAGGGCTCAGGGCTGGGCCCGGGACTCGCGGAGTGGCCGGC CAATGGCCTCGGGCTATGGGCGCATGTGGGAAGACCCCATGGGGGCCCGGGGCCAGTGCA TGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCTCCCAGAATATCATCCCTGAGTACGGCA TGTTCCAGGGCATGCGAGGAGGGGGCACCTTCCCAGGTGGCTCCCGCTTTGGCTTTGGGT TTGGCAATGGCATGAAGCAGATGAGGCGGACCTGGAAGACCTGGACCACAGCTGACTTCC GGACCAAGAAAAAGAAGAGAAAGCAATGTGGCAGTCCTGATGAGCCAGACAGCAAAGCCA CCCGGACAGACTGTTCTGATAACAGTGATTCAGACAATGACGAGGGCACCGAGGGGGAAG CTGCTGAGGGCACTGAAGGCACCGAAGCTGTGGAGAAGGGCTCCAGAGCAGAAGGAGAAG ACGAAGAGGGAAAAGAGGAGGGAAAGGAAGAAGGCAAAGAGGATGCAGACAAGGGGTCCC TGAGCACCCAGGATGAGAGTGGCCAGACCAAGCGCAAGTTGCAGACAGGCAAGAAGAGTC AGGACAAGCAGAAAAAGCGGCAGCGAGACCGTATGGTGGAAAGGATCCAGTTTGTGTGTT CTCTCTGCAAATATCGGACCTTTTATGAGGATGAGATGGCCAGCCACCTTGACAGCAAGT TTCACAAGGAACACTTTAAGTATGTAGGCACCAAGCTCCCCAAGCAGACAGCTGACTTTC TGCAGGAGTATGTTGCCAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAACTGTGGAGG ACCTTGATGGTCTGATCCAGCAGATCTACAGAGACCAAGATCTGACTCAAGAAATTGCCA TGGAACATTTTGTGAAGAAGGTAGAGGCAGCCCACTGTGCAGCCTGTGACCTCTTCATTC CTATGCAGTTTGGGATCATTCAGAAGCACCTCAAGACCATGGATCACAACCGGAACCGCA GGCTCATGATGGAGCAGTCTAAGAAGTCCTCGCTCATGGTGGCTCGCAGCATCCTTAACA ACAAGCTCATCAGCAAGAAGCTGGAACGCTATCTGAAGGGAGAGAACCCTTTCACCGACA GCCCGGAGGAGGAGAAGGAACAGGAGGAGGCCGAGGGCGGTGCCCTGGATGAGGGGGCGC TAGTCGAAGCAGCGGGAGTCGCAGAGGACGCGCCGGCTCAGCCCCCGGTGCCCCCGGAAC CGGTCTCTGGGGCTGCGACCCCGCCCCCACCTCCGCCCCCTGAGGAGGAGGAGGAAGCCT TGCCCCTGCTGGGCGGGGCGCTGCAGCGCCAAATCCGAGGCATCCCAGGCCTCGATGTAG AGGCTGACGACGAGGAGGAGGGCGGAGGGGGCGCTCCATGACCCGGGCGGGCGGGGCCCG CGTGGCAGAGGCTAGAAGCGGAGTCTAATAAAGTTCTTCCCTTCCCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTTGGGGGATTGTCGCCGCTATCGCGGCTTTGGACGCGTGGAACCCCCTGCTGTAGT CTTCAAGTGTAGTGTTAGCTGCTGCCATGAGCTACACAGGCTTTGTCCAGGGATCTGAAA CCACTTTGCAGTCAACGTACTCAGACACAAGTGCTCAGCCTACCTGTGATTATGGATATG GAACTTGGAACTCTGGGACAAACAGAGGCTACGAGAACTATGGTTATGGCTATGGCTATG GCCAGGATAACACCACCAACTATGGGTATGGTATGGCCACTTCAAACTCTTGGGAAATGC CTAGCTCTGACACAAATGCAAACCCTAGTGCCATGGGTAGTGCCAGTGCCGATTCCGTTT TGTCCAGAATTAACCAGCGCTTAGATATGGTTCCGCACTTGGAGACAGATGTGATACAAG GAGGCGTGTACAGCTCAGGTGGAGAAAGATATGATTCCTACGAGGCCTGTGACTCAAGGG CTGTCCTGAGCGAGCGTGATCTGTACCGGTCAGGCTATGACTACGGCGAGCTTGACCCTG AGATGGAAATGGCCTACGAGGGCCAGTACGATGCCTACCGCGACCAGTTCCGCATGCGTG GCGGCGACACCTTTGGCCCGAGGGCTCAGGGCTGGGCCCGGGACTCGCGGAGTGGCCGGC CAATGGCCTCGGGCTATGGGCGCATGTGGGAAGACCCCATGGGGGCCCGGGGCCAGTGCA TGCCTGGTGCCTCCCGGCTGCCCTCCCTCTTCTCCCAGAATATCATCCCTGAGTACGGCA TGTTCCAGGGCATGCGAGGAGGGGGCACCTTCCCAGGTGGCTCCCGCTTTGGCTTTGGGT TTGGCAATGGCATGAAGCAGATGAGGCGGACCTGGAAGACCTGGACCACAGCTGACTTCC GGACCAAGAAAAAGAAGAGAAAGCAATGTGGCAGTCCTGATGAGCCAGACAGCAAAGCCA CCCGGACAGACTGTTCTGATAACAGTGATTCAGACAATGACGAGGGCACCGAGGGGGAAG CTGCTGAGGGCACTGAAGGCACCGAAGCTGTGGAGAAGGGCTCCAGAGCAGAAGGAGAAG ACGAAGAGGGAAAAGAGGAGGGAAAGGAAGAAGGCAAAGAGGATGCAGACAAGGGGTCCC TGAGCACCCAGGATGAGAGTGGCCAGACCAAGCGCAAGTTGCAGACAGGCAAGAAGAGTC AGGACAAGCAGAAAAAGCGGCAGCGAGACCGTATGGTGGAAAGGATCCAGTTTGTGTGTT CTCTCTGCAAATATCGGACCTTTTATGAGGATGAGATGGCCAGCCACCTTGACAGCAAGT TTCACAAGGAACACTTTAAGTATGTAGGCACCAAGCTCCCCAAGCAGACAGCTGACTTTC TGCAGGAGTATGTTGCCAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAACTGTGGAGG ACCTTGATGGTCTGATCCAGCAGATCTACAGAGACCAAGATCTGACTCAAGAAATTGCCA TGGAACATTTTGTGAAGAAGGTAGAGGCAGCCCACTGTGCAGCCTGTGACCTCTTCATTC CTATGCAGTTTGGGATCATTCAGAAGCACCTCAAGACCATGGATCACAACCGGAACCGCA GGCTCATGATGGAGCAGTCTAAGAAGTCCTCGCTCATGGTGGCTCGCAGCATCCTTAACA ACAAGCTCATCAGCAAGAAGCTGGAACGCTATCTGAAGGGAGAGAACCCTTTCACCGACA GCCCGGAGGAGGAGAAGGAACAGGAGGAGGCCGAGGGCGGTGCCCTGGATGAGGGGGCGC TAGTCGAAGCAGCGGGAGTCGCAGAGGACGCGCCGGCTCAGCCCCCGGTGCCCCCGGAAC CGGTCTCTGGGGCTGCGACCCCGCCCCCACCTCCGCCCCCTGAGGAGGAGGAGGAAGCCT TGCCCCTGCTGGGCGGGGCGCTGCAGCGCCAAATCCGAGGCATCCCAGGCCTCGATGTAG AGGCTGACGACGAGGAGGAGGGCGGAGGGGGCGCTCCATGACCCGGGCGGGCGGGGCCCG CGTGGCAGAGGCTAGAAGCGGAGTCTAATAAAGTTCTTCCCTTCCCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 606-1975, - strand, RNAz p=0.920697 | |
| 1490-1608, + strand, RNAz p=0.7647 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 606-1975, - strand, RNAz p=0.920697 | |
| 1490-1608, + strand, RNAz p=0.7647 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 447-902, gnl|bosTau2|chr7 (6922221-6922676) | |
| 447-902, gnl|Hg17|chr19 (15373416-15372961) | |
| 447-902, gnl|Mm7|chr17 (30531532-30531077) | |
| 1242-1386, gnl|bosTau2|chr7 (6925835-6925979) | |
| 1242-1386, gnl|canFam2|chr20 (49791537-49791364) | |
| 1242-1386, gnl|dasNov1|scaffold_39906 (6210-6063) | |
| 1242-1386, gnl|echTel1|scaffold_208251 (7339-7511) | |
| 1242-1386, gnl|fr1|chrUn (175270300-175270469) | |
| 1242-1386, gnl|galGal2|chrUn (133419214-133419056) | |
| 1242-1386, gnl|hg17|chr19 (15369520-15369693) | |
| 1242-1386, gnl|Hg17|chr19 (15369668-15369524) | |
| 1242-1386, gnl|loxAfr1|scaffold_99576 (1028-1189) | |
| 1242-1386, gnl|mm7|chr17 (30527825-30527996) | |
| 1242-1386, gnl|Mm7|chr17 (30527973-30527829) | |
| 1242-1386, gnl|monDom2|scaffold_100 (1122320-1122490) | |
| 1242-1386, gnl|oryCun1|scaffold_99219 (4406-4579) | |
| 1242-1386, gnl|panTro1|chr20 (16083522-16083695) | |
| 1242-1386, gnl|rheMac2|chr19 (14991824-14991997) | |
| 1242-1386, gnl|rn3|chr7 (12901698-12901871) | |
| 1242-1386, gnl|tetNig1|chr18 (9168908-9169060) | |
| 1242-1386, gnl|xenTro1|scaffold_115 (2230569-2230419) | |
| 1490-1622, gnl|bosTau2|chr7 (6926411-6926543) | |
| 1490-1622, gnl|canFam2|chr20 (49792134-49791957) | |
| 1490-1622, gnl|dasNov1|scaffold_39906 (6431-6300) | |
| 1490-1622, gnl|echTel1|scaffold_208251 (6894-7044) | |
| 1490-1622, gnl|fr1|chrUn (175269889-175270036) | |
| 1490-1622, gnl|galGal2|chrUn (133420137-133419972) | |
| 1490-1622, gnl|hg17|chr19 (15368922-15369098) | |
| 1490-1622, gnl|Hg17|chr19 (15369093-15368961) | |
| 1490-1622, gnl|loxAfr1|scaffold_99576 (93-233) | |
| 1490-1622, gnl|mm7|chr17 (30527281-30527443) | |
| 1490-1622, gnl|Mm7|chr17 (30527438-30527306) | |
| 1490-1622, gnl|monDom2|scaffold_100 (1121319-1121483) | |
| 1490-1622, gnl|oryCun1|scaffold_99219 (3512-3676) | |
| 1490-1622, gnl|rheMac2|chr19 (14991225-14991401) | |
| 1490-1622, gnl|rn3|chr7 (12901148-12901312) | |
| 1490-1622, gnl|tetNig1|chr18 (9168500-9168646) | |
| 1490-1622, gnl|xenTro1|scaffold_115 (2231514-2231359) | |
| 1709-2087, gnl|bosTau2|chr7 (6941269-6941664) | |
| 1709-2087, gnl|Hg17|chr19 (15352251-15351861) | |
| 1709-2087, gnl|Mm7|chr17 (30516642-30516271) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 447-902, gnl|bosTau2|chr7 (6922221-6922676) | |
| 447-902, gnl|Hg17|chr19 (15373416-15372961) | |
| 447-902, gnl|Mm7|chr17 (30531532-30531077) | |
| 1242-1386, gnl|bosTau2|chr7 (6925835-6925979) | |
| 1242-1386, gnl|canFam2|chr20 (49791537-49791364) | |
| 1242-1386, gnl|dasNov1|scaffold_39906 (6210-6063) | |
| 1242-1386, gnl|echTel1|scaffold_208251 (7339-7511) | |
| 1242-1386, gnl|fr1|chrUn (175270300-175270469) | |
| 1242-1386, gnl|galGal2|chrUn (133419214-133419056) | |
| 1242-1386, gnl|hg17|chr19 (15369520-15369693) | |
| 1242-1386, gnl|Hg17|chr19 (15369668-15369524) | |
| 1242-1386, gnl|loxAfr1|scaffold_99576 (1028-1189) | |
| 1242-1386, gnl|mm7|chr17 (30527825-30527996) | |
| 1242-1386, gnl|Mm7|chr17 (30527973-30527829) | |
| 1242-1386, gnl|monDom2|scaffold_100 (1122320-1122490) | |
| 1242-1386, gnl|oryCun1|scaffold_99219 (4406-4579) | |
| 1242-1386, gnl|panTro1|chr20 (16083522-16083695) | |
| 1242-1386, gnl|rheMac2|chr19 (14991824-14991997) | |
| 1242-1386, gnl|rn3|chr7 (12901698-12901871) | |
| 1242-1386, gnl|tetNig1|chr18 (9168908-9169060) | |
| 1242-1386, gnl|xenTro1|scaffold_115 (2230569-2230419) | |
| 1490-1622, gnl|bosTau2|chr7 (6926411-6926543) | |
| 1490-1622, gnl|canFam2|chr20 (49792134-49791957) | |
| 1490-1622, gnl|dasNov1|scaffold_39906 (6431-6300) | |
| 1490-1622, gnl|echTel1|scaffold_208251 (6894-7044) | |
| 1490-1622, gnl|fr1|chrUn (175269889-175270036) | |
| 1490-1622, gnl|galGal2|chrUn (133420137-133419972) | |
| 1490-1622, gnl|hg17|chr19 (15368922-15369098) | |
| 1490-1622, gnl|Hg17|chr19 (15369093-15368961) | |
| 1490-1622, gnl|loxAfr1|scaffold_99576 (93-233) | |
| 1490-1622, gnl|mm7|chr17 (30527281-30527443) | |
| 1490-1622, gnl|Mm7|chr17 (30527438-30527306) | |
| 1490-1622, gnl|monDom2|scaffold_100 (1121319-1121483) | |
| 1490-1622, gnl|oryCun1|scaffold_99219 (3512-3676) | |
| 1490-1622, gnl|rheMac2|chr19 (14991225-14991401) | |
| 1490-1622, gnl|rn3|chr7 (12901148-12901312) | |
| 1490-1622, gnl|tetNig1|chr18 (9168500-9168646) | |
| 1490-1622, gnl|xenTro1|scaffold_115 (2231514-2231359) | |
| 1709-2087, gnl|bosTau2|chr7 (6941269-6941664) | |
| 1709-2087, gnl|Hg17|chr19 (15352251-15351861) | |
| 1709-2087, gnl|Mm7|chr17 (30516642-30516271) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| jca (0.11396) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| jca (0.11396) |