Non-Coding RNA Search

Ss1.1-Liv1-LVR010065D02.5.5

Sequence:


               
               AGCATTGCGGGCAGGCGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGA
CATGAGGGCGGAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTG
CTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGG
CCAGATCACGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGC
CTTCAGCCTCTACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCC
GCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCTCCACCCTGAC
AGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCA
GGGCTTCCAGCACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGT
GGGCAACGCCATGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGC
CCGTGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAG
GAGACTCATTAATGACTATGTGAAGAACAAAACTGAGGGGAAAATCGTGGAGTTGATCAA
GAAGCTTTTCCCTCGGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAAAGCCCAGTG
GATGACACACTTTGATCCCAACCTTACTACGGAGGCAGATTTCTACGTGAGCAAGAACAA
GACAGTGAAGGTGCCCATGATGGGCATTAAGAACCTGACCGTGCCATACTTCCGGGACGA
GGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCACGCTCTTCAT
CCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACGCTGAG
GAGGTGGAGAGACTCCCTGCAGCCCAGGCGGATAGATGCCCTCCACCTGCCACGGTTTTC
CATCTCCAGCGACTATAAACTGGAGGAGATCCTTCCCCGGCTGGGCATCAAGAAAATCTT
CAGTGCGGAGGCTGACCTGTCAGGAATCACAGATACAACACCCTTGTGTGTTTCCCAGGT
GGCCCACAGCGCCGTGCTGGACGTGGATGAGGAGGGCACGGAAGGAGCCGCGTCCACAGG
AGTCGTCATAGAAAGGAAGTCCTTTGAGAATTTCATTGTGCGATTTGACAGCCCCTTTCT
GTTCGCCACGGTCCTCAGAGACACCCAGAGCATCATCTTTCTGGGCAAAGTCGTCAACCC
CCATCCAGCCTAGAGCTCCCCTCTGAGCCGTGGGGCTTCTCGCTAAGGAGCTGGGTGCTC
TGGGCCCTGGGGCAGCCTGGCCTCTACTCAGCCATGAGCTGCCTCACCTTGGCTGCTCCC
GCTCACCCTTGGAAGGTGACAGTCACCTTCTGGTGGCTCCACACACACAGGAGTCTGTGC
CCTGCTCCGCGGAGGCTCTGAGACCTCCCACAGCAATAAAGCATCTTTCTGAGCTGGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATTGCGGGCAGGCGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGA
CATGAGGGCGGAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTG
CTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGG
CCAGATCACGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCGC
CTTCAGCCTCTACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCC
GCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCTCCACCCTGAC
AGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCA
GGGCTTCCAGCACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGT
GGGCAACGCCATGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGC
CCGTGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAG
GAGACTCATTAATGACTATGTGAAGAACAAAACTGAGGGGAAAATCGTGGAGTTGATCAA
GAAGCTTTTCCCTCGGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAAAGCCCAGTG
GATGACACACTTTGATCCCAACCTTACTACGGAGGCAGATTTCTACGTGAGCAAGAACAA
GACAGTGAAGGTGCCCATGATGGGCATTAAGAACCTGACCGTGCCATACTTCCGGGACGA
GGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCACGCTCTTCAT
CCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACGCTGAG
GAGGTGGAGAGACTCCCTGCAGCCCAGGCGGATAGATGCCCTCCACCTGCCACGGTTTTC
CATCTCCAGCGACTATAAACTGGAGGAGATCCTTCCCCGGCTGGGCATCAAGAAAATCTT
CAGTGCGGAGGCTGACCTGTCAGGAATCACAGATACAACACCCTTGTGTGTTTCCCAGGT
GGCCCACAGCGCCGTGCTGGACGTGGATGAGGAGGGCACGGAAGGAGCCGCGTCCACAGG
AGTCGTCATAGAAAGGAAGTCCTTTGAGAATTTCATTGTGCGATTTGACAGCCCCTTTCT
GTTCGCCACGGTCCTCAGAGACACCCAGAGCATCATCTTTCTGGGCAAAGTCGTCAACCC
CCATCCAGCCTAGAGCTCCCCTCTGAGCCGTGGGGCTTCTCGCTAAGGAGCTGGGTGCTC
TGGGCCCTGGGGCAGCCTGGCCTCTACTCAGCCATGAGCTGCCTCACCTTGGCTGCTCCC
GCTCACCCTTGGAAGGTGACAGTCACCTTCTGGTGGCTCCACACACACAGGAGTCTGTGC
CCTGCTCCGCGGAGGCTCTGAGACCTCCCACAGCAATAAAGCATCTTTCTGAGCTGGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9GMA7_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GMA7_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-404, no strand, RNAz p=0.534144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-404, no strand, RNAz p=0.534144

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               46-713, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               46-713, gnl|Hg17|chr14 (94150510-94151174)
               

               
               46-713, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1128-1549, gnl|bosTau2|chr21 (40700330-40699908)
               

               
               1128-1549, gnl|Hg17|chr14 (94159689-94160137)
               

               
               1128-1549, gnl|Mm7|chr12 (101907722-101908142)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-713, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               46-713, gnl|Hg17|chr14 (94150510-94151174)
               

               
               46-713, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1128-1549, gnl|bosTau2|chr21 (40700330-40699908)
               

               
               1128-1549, gnl|Hg17|chr14 (94159689-94160137)
               

               
               1128-1549, gnl|Mm7|chr12 (101907722-101908142)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (3.97311)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (3.97311)
               

               
               lun (0.150489)

	46-713, gnl\|bosTau2\|chr21 (40705409-40704769)
	46-713, gnl\|Hg17\|chr14 (94150510-94151174)
	46-713, gnl\|Mm7\|chr12 (101902962-101903629)

	1128-1549, gnl\|bosTau2\|chr21 (40700330-40699908)
	1128-1549, gnl\|Hg17\|chr14 (94159689-94160137)
	1128-1549, gnl\|Mm7\|chr12 (101907722-101908142)