Non-Coding RNA Search

Ss1.1-Liv1-LVR010066A06.5

Sequence:


               
               CTGTGCCGGGTGGCTCGATTTAAGGGGTAAGGGTTCAGGATCCGCTGTAGGGATCGCAAA
GCGTAGCGGCCCCATGGCACCCCTGGGAAGCGTCCCGCGGTTGGTGCTGCTTTTCAGCGG
GAAGAGGAAATCCGGGAAGGACTTCGTGACCGAGGCGCTGCAGAGCAGGCTCGGAGCTGA
TGTCTGTGCCATCCTCCGGCTCTCGGGCCCACTCAAGGAGCAGTATGCTCAGGAGCATGG
CTTGGACTTCCAGAGACTCCTGGACGCCAGCACCTACAAGGAGTCCTATCGGAAGGACAT
GATCCGCTGGGGCCAGGAGAAGCGCCAGGCTGACCCAGGTTTCTTCTGCAGGAAGATCGT
GGAGGGCGTCTCCCAGCCCATCTGGCTGGTGAGTGACACTCGGAGACTGTCTGACATCCA
GTGGTTTCAGGAGACCTATGGGGCTGTGACGCAGACGGTCCGAGTGGTGGCCACGGAGCA
GAGCCGCCAGCAGCGGGGCTGGGTGTTCATACCAGGGGTGGATGATGCTGAGTCAGAGTG
TGGCCTGGACGACTTCGGGGCCTTCGATTGGGTCATCGAGAACCACGGAGATGAGCAGCA
CCTGGAGGAGCAGTTGGGGCACCTGATAGAATTTGTTCACTCCAGGCTTTAGCTGGCATG
TTCTAGGAGTGTGTCGGGGGCTGCCGGGGTAAAGGGGCGCTGACTGTGCTGGACATAGGG
TCACTGATGCTGGCGGAGGTCGAGGAGCAGACAGAGGGCCTGGGTCTGGTGTCTGGGTGC
TGTCAGGCATCAGACAGGTTAGGAACTCACCGGGGACCTCATTTCTTTATGGAAAGGACA
GCCCTACCTCTTTAGAGGGAGACTTAAAGAGCGAGGGGGTTGGGGGTGAGTTGGCTGTGC
TTAAAACTGAAGCATCACCATCTCTATGGGTACCAGGCCTGTCAGCCAGCAGCGGCCTTG
CTTCCCTGACCGGATGCTCTCAGCCCCTTGTTCTGTGCAAGAGCCCAGGGCTCCCCAGTG
TATAAGCTAATAAACCTCCTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCCGGGTGGCTCGATTTAAGGGGTAAGGGTTCAGGATCCGCTGTAGGGATCGCAAA
GCGTAGCGGCCCCATGGCACCCCTGGGAAGCGTCCCGCGGTTGGTGCTGCTTTTCAGCGG
GAAGAGGAAATCCGGGAAGGACTTCGTGACCGAGGCGCTGCAGAGCAGGCTCGGAGCTGA
TGTCTGTGCCATCCTCCGGCTCTCGGGCCCACTCAAGGAGCAGTATGCTCAGGAGCATGG
CTTGGACTTCCAGAGACTCCTGGACGCCAGCACCTACAAGGAGTCCTATCGGAAGGACAT
GATCCGCTGGGGCCAGGAGAAGCGCCAGGCTGACCCAGGTTTCTTCTGCAGGAAGATCGT
GGAGGGCGTCTCCCAGCCCATCTGGCTGGTGAGTGACACTCGGAGACTGTCTGACATCCA
GTGGTTTCAGGAGACCTATGGGGCTGTGACGCAGACGGTCCGAGTGGTGGCCACGGAGCA
GAGCCGCCAGCAGCGGGGCTGGGTGTTCATACCAGGGGTGGATGATGCTGAGTCAGAGTG
TGGCCTGGACGACTTCGGGGCCTTCGATTGGGTCATCGAGAACCACGGAGATGAGCAGCA
CCTGGAGGAGCAGTTGGGGCACCTGATAGAATTTGTTCACTCCAGGCTTTAGCTGGCATG
TTCTAGGAGTGTGTCGGGGGCTGCCGGGGTAAAGGGGCGCTGACTGTGCTGGACATAGGG
TCACTGATGCTGGCGGAGGTCGAGGAGCAGACAGAGGGCCTGGGTCTGGTGTCTGGGTGC
TGTCAGGCATCAGACAGGTTAGGAACTCACCGGGGACCTCATTTCTTTATGGAAAGGACA
GCCCTACCTCTTTAGAGGGAGACTTAAAGAGCGAGGGGGTTGGGGGTGAGTTGGCTGTGC
TTAAAACTGAAGCATCACCATCTCTATGGGTACCAGGCCTGTCAGCCAGCAGCGGCCTTG
CTTCCCTGACCGGATGCTCTCAGCCCCTTGTTCTGTGCAAGAGCCCAGGGCTCCCCAGTG
TATAAGCTAATAAACCTCCTTGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1294800|gb|AAC37331.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1294800|gb|AAC37331.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-169, gnl|bosTau2|chr3 (9016705-9016541)
               

               
               1-169, gnl|Hg17|chr1 (151722304-151722139)
               

               
               1-169, gnl|Mm7|chr3 (89585967-89586128)
               


               
               230-388, gnl|bosTau2|chr3 (9011462-9011304)
               

               
               230-388, gnl|Hg17|chr1 (151714728-151714570)
               

               
               230-388, gnl|Mm7|chr3 (89590956-89591114)
               


               
               513-1044, gnl|bosTau2|chr3 (9007389-9006869)
               

               
               513-1044, gnl|Hg17|chr1 (151710817-151710294)
               

               
               513-1044, gnl|Mm7|chr3 (89595173-89595755)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr3 (9016705-9016541)
               

               
               1-169, gnl|Hg17|chr1 (151722304-151722139)
               

               
               1-169, gnl|Mm7|chr3 (89585967-89586128)
               


               
               230-388, gnl|bosTau2|chr3 (9011462-9011304)
               

               
               230-388, gnl|Hg17|chr1 (151714728-151714570)
               

               
               230-388, gnl|Mm7|chr3 (89590956-89591114)
               


               
               513-1044, gnl|bosTau2|chr3 (9007389-9006869)
               

               
               513-1044, gnl|Hg17|chr1 (151710817-151710294)
               

               
               513-1044, gnl|Mm7|chr3 (89595173-89595755)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cli (0.305623)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	1-169, gnl\|bosTau2\|chr3 (9016705-9016541)
	1-169, gnl\|Hg17\|chr1 (151722304-151722139)
	1-169, gnl\|Mm7\|chr3 (89585967-89586128)

	230-388, gnl\|bosTau2\|chr3 (9011462-9011304)
	230-388, gnl\|Hg17\|chr1 (151714728-151714570)
	230-388, gnl\|Mm7\|chr3 (89590956-89591114)

	513-1044, gnl\|bosTau2\|chr3 (9007389-9006869)
	513-1044, gnl\|Hg17\|chr1 (151710817-151710294)
	513-1044, gnl\|Mm7\|chr3 (89595173-89595755)

	cli (0.305623)
	cag (0.151194)
	nca (0.136874)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)