Ss1.1-Liv1-LVR010066B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGAGACACAGGATTACAAAATCTCGAAGGGGGTGGAGTGAGATACTGGAGGCATAAA AGCAGGTGCAGGGGCCCCCACAGCACTGCTCTTCCAGAGGCAGAGGAACCCAAGATGCGC GCCCTGGGAGCTGTCGTCGCCCTCCTGCTCTGCGGGCAGCTTTTTGCAGCAGAAACCGGC AATGAGGCCACAGATGCCACAGATGACAGCTGCCCAAAGCCCCCTGAGATCCCAAAGGGC TACGTGGAGCACATGGTTCGCTATCACTGCCAAACCTACTACAAACTGCGCACGGCAGGA GATGGAGTGTACACCTTGGACAGTAATAAGCAGTGGACAAATAAGGTCACTGGAGAGAAA CTGCCTGAATGTGAAGCAGTGTGCGGGAAGCCCAAGAACCCAGTGGATCAGGTGCAGCGG ATCATGGGTGGCTCGCTGGACGCCAAAGGCAGCTTCCCCTGGCAGGCTAAGATGATCTCC CACCATAACCTCACCTCGGGGGCCACGCTCATCAATGAACAGTGGCTGCTGACCACGGCT AAGAATCTCCGCTTGGGTCATAAAAATGATACAAAAGCAAAAGACATTGCTCCTACTTTA AGACTCTATGTGGGAAAGAAACAGGAGGTGGAGATTGAGAAGGTGATTTTCCATCCTGAC AACTCCACGGTAGACATCGGGCTCATCAAACTCAAGCAGAAGGTGCCCGTTAATGAGAGG GTGATGCCCATTTGCCTCCCTTCTAAAGATTATGTGAATGTGGGGCTTGTGGGCTACGTG TCTGGCTGGGGGCGAAACGCCAACCTCAACTTTACGGAGCATCTGAAGTATGTCATGCTG CCGGTGGCTGACCAAGAAAAATGTGTACAGTACTACGAAGGCAGCACCGTGCCAGAGAAG AAGACACCCAAGAGCCCGGTGGGGGTGCAGCCCATCCTGAACGAGCACACCTTCTGCGCC GGCTTGTCCAAGTACCAGGAAGACACCTGCTACGGCGACGCCGGCAGCGCCTTTGCTGTT CACGACAAGGATGATGACACCTGGTACGCGGCTGGGATCCTGAGCTTCGACAAGAGCTGT CGTACGGCGGAGTACGGTGTGTATGTAAGGGTGACCTCCATCCTGGACTGGATTCAGACA ACCATAGCTGACAACTGAGGCCGCCAGCCTGGGCCTGAAAGGACGAGGGAAAACTGGACG GGAGCGGAGGGGAGAAAACGTGGTGTGAAGCTGCCGGGTTCCAGCCCCACATCGCTGAGT CAGTCAATAAAGAGCTTCCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGAGACACAGGATTACAAAATCTCGAAGGGGGTGGAGTGAGATACTGGAGGCATAAA AGCAGGTGCAGGGGCCCCCACAGCACTGCTCTTCCAGAGGCAGAGGAACCCAAGATGCGC GCCCTGGGAGCTGTCGTCGCCCTCCTGCTCTGCGGGCAGCTTTTTGCAGCAGAAACCGGC AATGAGGCCACAGATGCCACAGATGACAGCTGCCCAAAGCCCCCTGAGATCCCAAAGGGC TACGTGGAGCACATGGTTCGCTATCACTGCCAAACCTACTACAAACTGCGCACGGCAGGA GATGGAGTGTACACCTTGGACAGTAATAAGCAGTGGACAAATAAGGTCACTGGAGAGAAA CTGCCTGAATGTGAAGCAGTGTGCGGGAAGCCCAAGAACCCAGTGGATCAGGTGCAGCGG ATCATGGGTGGCTCGCTGGACGCCAAAGGCAGCTTCCCCTGGCAGGCTAAGATGATCTCC CACCATAACCTCACCTCGGGGGCCACGCTCATCAATGAACAGTGGCTGCTGACCACGGCT AAGAATCTCCGCTTGGGTCATAAAAATGATACAAAAGCAAAAGACATTGCTCCTACTTTA AGACTCTATGTGGGAAAGAAACAGGAGGTGGAGATTGAGAAGGTGATTTTCCATCCTGAC AACTCCACGGTAGACATCGGGCTCATCAAACTCAAGCAGAAGGTGCCCGTTAATGAGAGG GTGATGCCCATTTGCCTCCCTTCTAAAGATTATGTGAATGTGGGGCTTGTGGGCTACGTG TCTGGCTGGGGGCGAAACGCCAACCTCAACTTTACGGAGCATCTGAAGTATGTCATGCTG CCGGTGGCTGACCAAGAAAAATGTGTACAGTACTACGAAGGCAGCACCGTGCCAGAGAAG AAGACACCCAAGAGCCCGGTGGGGGTGCAGCCCATCCTGAACGAGCACACCTTCTGCGCC GGCTTGTCCAAGTACCAGGAAGACACCTGCTACGGCGACGCCGGCAGCGCCTTTGCTGTT CACGACAAGGATGATGACACCTGGTACGCGGCTGGGATCCTGAGCTTCGACAAGAGCTGT CGTACGGCGGAGTACGGTGTGTATGTAAGGGTGACCTCCATCCTGGACTGGATTCAGACA ACCATAGCTGACAACTGAGGCCGCCAGCCTGGGCCTGAAAGGACGAGGGAAAACTGGACG GGAGCGGAGGGGAGAAAACGTGGTGTGAAGCTGCCGGGTTCCAGCCCCACATCGCTGAGT CAGTCAATAAAGAGCTTCCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 416-575, - strand, RNAz p=0.893972 | |
| 616-775, + strand, RNAz p=0.885246 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-575, - strand, RNAz p=0.893972 | |
| 616-775, + strand, RNAz p=0.885246 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-117, gnl|bosTau2|chr18 (32115275-32115157) | |
| 1-117, gnl|canFam2|chr5 (80801791-80802168) | |
| 1-117, gnl|dasNov1|scaffold_6127 (8763-9125) | |
| 1-117, gnl|hg17|chr16 (70645837-70646179) | |
| 1-117, gnl|Hg17|chr16 (70645939-70646055) | |
| 1-117, gnl|mm7|chr8 (108179406-108179034) | |
| 1-117, gnl|Mm7|chr8 (108179306-108179144) | |
| 1-117, gnl|monDom2|scaffold_23 (1231930-1232296) | |
| 1-117, gnl|oryCun1|scaffold_177992 (52588-52237) | |
| 1-117, gnl|panTro1|chr18 (65013937-65014279) | |
| 1-117, gnl|rheMac2|chr20 (70583824-70583481) | |
| 1-117, gnl|rn3|chr19 (39452651-39452335) | |
| 200-305, gnl|bosTau2|chr18 (32111895-32111790) | |
| 200-305, gnl|canFam2|chr5 (80803652-80803767) | |
| 200-305, gnl|dasNov1|scaffold_6127 (9988-10105) | |
| 200-305, gnl|echTel1|scaffold_167351 (4678-4564) | |
| 200-305, gnl|hg17|chr16 (70649632-70649748) | |
| 200-305, gnl|Hg17|chr16 (70649651-70649756) | |
| 200-305, gnl|mm7|chr8 (108177387-108177271) | |
| 200-305, gnl|Mm7|chr8 (108177366-108177261) | |
| 200-305, gnl|oryCun1|scaffold_177992 (50947-50831) | |
| 200-305, gnl|panTro1|chr18 (65032201-65032317) | |
| 200-305, gnl|rheMac2|chr20 (70581506-70581390) | |
| 200-305, gnl|rn3|chr19 (39450397-39450281) | |
| 377-1246, gnl|bosTau2|chr18 (32109932-32109052) | |
| 377-1246, gnl|Hg17|chr16 (70651509-70652431) | |
| 377-1246, gnl|Mm7|chr8 (108176184-108175305) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-117, gnl|bosTau2|chr18 (32115275-32115157) | |
| 1-117, gnl|canFam2|chr5 (80801791-80802168) | |
| 1-117, gnl|dasNov1|scaffold_6127 (8763-9125) | |
| 1-117, gnl|hg17|chr16 (70645837-70646179) | |
| 1-117, gnl|Hg17|chr16 (70645939-70646055) | |
| 1-117, gnl|mm7|chr8 (108179406-108179034) | |
| 1-117, gnl|Mm7|chr8 (108179306-108179144) | |
| 1-117, gnl|monDom2|scaffold_23 (1231930-1232296) | |
| 1-117, gnl|oryCun1|scaffold_177992 (52588-52237) | |
| 1-117, gnl|panTro1|chr18 (65013937-65014279) | |
| 1-117, gnl|rheMac2|chr20 (70583824-70583481) | |
| 1-117, gnl|rn3|chr19 (39452651-39452335) | |
| 200-305, gnl|bosTau2|chr18 (32111895-32111790) | |
| 200-305, gnl|canFam2|chr5 (80803652-80803767) | |
| 200-305, gnl|dasNov1|scaffold_6127 (9988-10105) | |
| 200-305, gnl|echTel1|scaffold_167351 (4678-4564) | |
| 200-305, gnl|hg17|chr16 (70649632-70649748) | |
| 200-305, gnl|Hg17|chr16 (70649651-70649756) | |
| 200-305, gnl|mm7|chr8 (108177387-108177271) | |
| 200-305, gnl|Mm7|chr8 (108177366-108177261) | |
| 200-305, gnl|oryCun1|scaffold_177992 (50947-50831) | |
| 200-305, gnl|panTro1|chr18 (65032201-65032317) | |
| 200-305, gnl|rheMac2|chr20 (70581506-70581390) | |
| 200-305, gnl|rn3|chr19 (39450397-39450281) | |
| 377-1246, gnl|bosTau2|chr18 (32109932-32109052) | |
| 377-1246, gnl|Hg17|chr16 (70651509-70652431) | |
| 377-1246, gnl|Mm7|chr8 (108176184-108175305) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cli (40.9535) | |
| lun (8.72837) | |
| eli (2.42903) | |
| cga (1.95367) | |
| fli (1.42017) | |
| mga (0.64082) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| ute (0.265569) | |
| cov (0.264306) | |
| clu (0.239292) | |
| med (0.232504) | |
| csp (0.161186) | |
| liv (0.146284) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (40.9535) | |
| lun (8.72837) | |
| eli (2.42903) | |
| cga (1.95367) | |
| fli (1.42017) | |
| mga (0.64082) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| ute (0.265569) | |
| cov (0.264306) | |
| clu (0.239292) | |
| med (0.232504) | |
| csp (0.161186) | |
| liv (0.146284) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) |