Non-Coding RNA Search

Ss1.1-Liv1-LVR010066E04.5.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAAAACTGGAGCATTGCGGGCAGGCGGCGGCTCTGGGTCC
ACTCAGCGCATCCCGCTCTGCGAGGCAGGCATGAAGGCAGAGGGCATGTCCCCCTTCCTG
GCTCTGGGGCTCCTGGTGGCTGGGCTCTGCTCCAGCGTCCACTGCGTCCCCGAAAGCAAA
CCTGACCCAGAGAATGGGACCCCGAAGGACCAGCACAGCAGGACTCCCGTGGACCCCCAC
GCCATTGTCCCCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGTTTCTTTA
GACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTG
TCTCTGGGGGCCCGAGGCCCCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAACCTC
ACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGCAGGCCCTCAGC
CAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCATCTG
AAGCTGCTGGACGAGTTCAGGCGAGACGCCCAGGCAAAGTTCGCCTCCGATGTCTTTTCC
ACCAACTTCAAGGATCCCGAGGCTGCCGTCGTGTTCATCAACGACTACGTGAAGAACAAA
ACGAAGGGGAAAATCCCGAAGCTGTTCGATGAACATGCCACCTTCTCCGTGATGGTCCTG
GTGAATTACATCTACTTTAACGCCAAGTGGAAGACGCCCTTTGATCCAGAACATACTATA
GAGTCCACGTTCCAAGTGAGCAAGAACAAGACAGTGAAGGTGCCCATGATGAGCCTTCGA
GGCCTGGAAACACCTTACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCG
TACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGAGGACGTG
GAAGCCAAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGAGACTCCCTGCAGCCCAGACGG
ATAGATGCCCTCTACCTGCCACGGTTTTCTGTCTCCGGCGACTATCAACTGAAGGACACC
CTTAAGCAGCTGGGCATTCAGAAAGTGTTCACCCACGAGGCTGACCTGTCAGGAGTCACA
GGGGACAACAAACTGGGGGTTTCCAAGGTGATCCACAAGGCGGTGCTTGATGTGGGCGAG
GAGGGCACAGAAGCAGCTGCTGCCACTGGAATTGCAATGATGACCTCGACCCTCTACAGC
CTCACTGTTAGTTTTTCCAGTCCCTTTCTGTTCGCCGTAATCGACAAAGACACTGGCACT
GTCCTCTTTTTGGGCAAAGTCGCTGACCCCAGTCCTGCCTAGAGCTCCCTTGCTCGTGGC
TGGTTCCTCTCACCAAGGAGCTGAGTGCCCTGGTCCCTGGGGGCAGGCTGGGCCCTGTGC
CCCAAGAAAACCCCCATCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACAGTCCCTCC
ACTCGTGGCTCCACATGCCCAGGGAGTCTGCGCCCTGTTCCGCGGAGGCTCTGAGACCTC
CCACAGCAATAAAGCATCTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAAAACTGGAGCATTGCGGGCAGGCGGCGGCTCTGGGTCC
ACTCAGCGCATCCCGCTCTGCGAGGCAGGCATGAAGGCAGAGGGCATGTCCCCCTTCCTG
GCTCTGGGGCTCCTGGTGGCTGGGCTCTGCTCCAGCGTCCACTGCGTCCCCGAAAGCAAA
CCTGACCCAGAGAATGGGACCCCGAAGGACCAGCACAGCAGGACTCCCGTGGACCCCCAC
GCCATTGTCCCCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGTTTCTTTA
GACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTG
TCTCTGGGGGCCCGAGGCCCCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAACCTC
ACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGCAGGCCCTCAGC
CAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCATCTG
AAGCTGCTGGACGAGTTCAGGCGAGACGCCCAGGCAAAGTTCGCCTCCGATGTCTTTTCC
ACCAACTTCAAGGATCCCGAGGCTGCCGTCGTGTTCATCAACGACTACGTGAAGAACAAA
ACGAAGGGGAAAATCCCGAAGCTGTTCGATGAACATGCCACCTTCTCCGTGATGGTCCTG
GTGAATTACATCTACTTTAACGCCAAGTGGAAGACGCCCTTTGATCCAGAACATACTATA
GAGTCCACGTTCCAAGTGAGCAAGAACAAGACAGTGAAGGTGCCCATGATGAGCCTTCGA
GGCCTGGAAACACCTTACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCG
TACACCAGCAACGACAGCGCGCTCTTCATCCTCCCTGACGACGGCAGGATGGAGGACGTG
GAAGCCAAGCTGCTCCCGGAGACGCTGAGGAGGTGGAGAGACTCCCTGCAGCCCAGACGG
ATAGATGCCCTCTACCTGCCACGGTTTTCTGTCTCCGGCGACTATCAACTGAAGGACACC
CTTAAGCAGCTGGGCATTCAGAAAGTGTTCACCCACGAGGCTGACCTGTCAGGAGTCACA
GGGGACAACAAACTGGGGGTTTCCAAGGTGATCCACAAGGCGGTGCTTGATGTGGGCGAG
GAGGGCACAGAAGCAGCTGCTGCCACTGGAATTGCAATGATGACCTCGACCCTCTACAGC
CTCACTGTTAGTTTTTCCAGTCCCTTTCTGTTCGCCGTAATCGACAAAGACACTGGCACT
GTCCTCTTTTTGGGCAAAGTCGCTGACCCCAGTCCTGCCTAGAGCTCCCTTGCTCGTGGC
TGGTTCCTCTCACCAAGGAGCTGAGTGCCCTGGTCCCTGGGGGCAGGCTGGGCCCTGTGC
CCCAAGAAAACCCCCATCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACAGTCCCTCC
ACTCGTGGCTCCACATGCCCAGGGAGTCTGCGCCCTGTTCCGCGGAGGCTCTGAGACCTC
CCACAGCAATAAAGCATCTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9GMA8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GMA8_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               75-749, gnl|bosTau2|chr21 (40639740-40639084)
               

               
               75-749, gnl|Hg17|chr14 (94150510-94151183)
               

               
               75-749, gnl|Mm7|chr12 (101902962-101903636)
               


               
               1139-1583, gnl|bosTau2|chr21 (40633187-40632741)
               

               
               1139-1583, gnl|Hg17|chr14 (94159672-94160139)
               

               
               1139-1583, gnl|Mm7|chr12 (101907705-101908144)
               


               
               1156-1582, gnl|bosTau2|chr21 (40700331-40699908)
               

               
               1156-1582, gnl|Hg17|chr14 (94159688-94160137)
               

               
               1156-1582, gnl|Mm7|chr12 (101907721-101908142)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-749, gnl|bosTau2|chr21 (40639740-40639084)
               

               
               75-749, gnl|Hg17|chr14 (94150510-94151183)
               

               
               75-749, gnl|Mm7|chr12 (101902962-101903636)
               


               
               1139-1583, gnl|bosTau2|chr21 (40633187-40632741)
               

               
               1139-1583, gnl|Hg17|chr14 (94159672-94160139)
               

               
               1139-1583, gnl|Mm7|chr12 (101907705-101908144)
               


               
               1156-1582, gnl|bosTau2|chr21 (40700331-40699908)
               

               
               1156-1582, gnl|Hg17|chr14 (94159688-94160137)
               

               
               1156-1582, gnl|Mm7|chr12 (101907721-101908142)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cli (26.2836)
               

               
               fli (11.97)
               

               
               eli (3.79535)
               

               
               lun (1.3544)
               

               
               pty (0.142714)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (26.2836)
               

               
               fli (11.97)
               

               
               eli (3.79535)
               

               
               lun (1.3544)
               

               
               pty (0.142714)

	75-749, gnl\|bosTau2\|chr21 (40639740-40639084)
	75-749, gnl\|Hg17\|chr14 (94150510-94151183)
	75-749, gnl\|Mm7\|chr12 (101902962-101903636)

	1139-1583, gnl\|bosTau2\|chr21 (40633187-40632741)
	1139-1583, gnl\|Hg17\|chr14 (94159672-94160139)
	1139-1583, gnl\|Mm7\|chr12 (101907705-101908144)

	1156-1582, gnl\|bosTau2\|chr21 (40700331-40699908)
	1156-1582, gnl\|Hg17\|chr14 (94159688-94160137)
	1156-1582, gnl\|Mm7\|chr12 (101907721-101908142)

	cli (26.2836)
	fli (11.97)
	eli (3.79535)
	lun (1.3544)
	pty (0.142714)