Ss1.1-Liv1-LVR010066F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGATGCTTGCTTCGTATACAGCTAAACTTCTGAAGGCTACAGTATCTGAGGTACCCTG CCGTTACTAAATCCAGACCTACCCCTGAGAACAGCTTTTACCTAAGCAATATAAAAATGC AATTATTCTTCTCCCCTTCCTTAACCCCCACCCCTCAGTTTCCTTCAGGAAGAAACCACA GCATGGAGTTTCTTTTCAAAGTCTTAAAATAAAAATCCCCCCCCAACAAAAAAAGGATCC AGCTTGTAAAACCTTTTAGAGTTGTTTGAAAAAGGAGGAAAAAAAAAAAAAAAAAGGCAT AAGGAGCCAAGCCTTATATTCTGGCCAAGTTATAAGCCTCTGAGAACAAGCGCCTGAGAA GAGGACTGTTAACCCCATTCTCTCGGGCAGAAGGAGCTCTTTCCCTGTGGGTCTGCACAG CCTGGAAAGCTCATCACGCCCTCGCCTCGGAGTAAGAGGCTAGCCCGCTGGAGAACTGCA GGAATCTGCAACAAAAACGATGACAGCCTGAAATACGTCCCAGTGCCAACCTCCAAATTC ATCTGTCACCTCAGACCCTGACTAGTTGACAGAGCAGCAGAATTTCAACTCCAATAGACC TGAATGTGTTTCTGGGCAAAGAAGCAGAGCTAACGAGGAAAGAGATATATAGAGTATTGG GTATTTGTCAAACTTTTATTTTCTGGCTGTGTGCAAAGAGAAGATTCAACTTCAAATTCC TGCCAAGGCTCTGGGTCCAGCCACCTACCTGAAGGGCTAGAAAGATGAAGACTCTGCTTT TTCTCCTGTACATTTTGGGAACGGCAGCTGCAGTCCCGACACAAGCCAGGTTCCCATCTG GTCATTCCAACCCAACTGCTGCTTCCTTAAGTTCCTTCCAGCAGGCTGAAACGTTGGTAA CAGCGGAGCAGACTGCAACCCCCACTGGAAGGGTTGAAGATGCAGAAAATGAAAAGGAAC CAGCAGTGTCCCTAGAAGAGCATCCCCATCATAAGGCTGAAAAATCTTCAGTACTAAAGT CAAAGCAGGAAGACCATGAAGAGTCAGCAGACCAGGACCAGAGCTACAGCCAAAACCTGG GATCACAGGAACATGAGAAAAGTGAAAGAGACTTAATTGAGAACTCCGAGTATATGCCAA CTGAAGGTACATTGGACCTAAAAGAAGATATGACTCAACCTCAAAAGGAAAAATTCCCAG AGAGCATTGATTCCCTTGGTCATGATGACAGTTCCATTGTAGATTCTAACCAACAAGAAA GTATCACAAAAGCAGAGGAAAACCAAGACTCACATCCTCAACTGAACGGGAGCAGTAAAC ATAGCCCAGATCTAAGTGACCGAGGAAACCAAGAGCAGGATCCAGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGATGCTTGCTTCGTATACAGCTAAACTTCTGAAGGCTACAGTATCTGAGGTACCCTG CCGTTACTAAATCCAGACCTACCCCTGAGAACAGCTTTTACCTAAGCAATATAAAAATGC AATTATTCTTCTCCCCTTCCTTAACCCCCACCCCTCAGTTTCCTTCAGGAAGAAACCACA GCATGGAGTTTCTTTTCAAAGTCTTAAAATAAAAATCCCCCCCCAACAAAAAAAGGATCC AGCTTGTAAAACCTTTTAGAGTTGTTTGAAAAAGGAGGAAAAAAAAAAAAAAAAAGGCAT AAGGAGCCAAGCCTTATATTCTGGCCAAGTTATAAGCCTCTGAGAACAAGCGCCTGAGAA GAGGACTGTTAACCCCATTCTCTCGGGCAGAAGGAGCTCTTTCCCTGTGGGTCTGCACAG CCTGGAAAGCTCATCACGCCCTCGCCTCGGAGTAAGAGGCTAGCCCGCTGGAGAACTGCA GGAATCTGCAACAAAAACGATGACAGCCTGAAATACGTCCCAGTGCCAACCTCCAAATTC ATCTGTCACCTCAGACCCTGACTAGTTGACAGAGCAGCAGAATTTCAACTCCAATAGACC TGAATGTGTTTCTGGGCAAAGAAGCAGAGCTAACGAGGAAAGAGATATATAGAGTATTGG GTATTTGTCAAACTTTTATTTTCTGGCTGTGTGCAAAGAGAAGATTCAACTTCAAATTCC TGCCAAGGCTCTGGGTCCAGCCACCTACCTGAAGGGCTAGAAAGATGAAGACTCTGCTTT TTCTCCTGTACATTTTGGGAACGGCAGCTGCAGTCCCGACACAAGCCAGGTTCCCATCTG GTCATTCCAACCCAACTGCTGCTTCCTTAAGTTCCTTCCAGCAGGCTGAAACGTTGGTAA CAGCGGAGCAGACTGCAACCCCCACTGGAAGGGTTGAAGATGCAGAAAATGAAAAGGAAC CAGCAGTGTCCCTAGAAGAGCATCCCCATCATAAGGCTGAAAAATCTTCAGTACTAAAGT CAAAGCAGGAAGACCATGAAGAGTCAGCAGACCAGGACCAGAGCTACAGCCAAAACCTGG GATCACAGGAACATGAGAAAAGTGAAAGAGACTTAATTGAGAACTCCGAGTATATGCCAA CTGAAGGTACATTGGACCTAAAAGAAGATATGACTCAACCTCAAAAGGAAAAATTCCCAG AGAGCATTGATTCCCTTGGTCATGATGACAGTTCCATTGTAGATTCTAACCAACAAGAAA GTATCACAAAAGCAGAGGAAAACCAAGACTCACATCCTCAACTGAACGGGAGCAGTAAAC ATAGCCCAGATCTAAGTGACCGAGGAAACCAAGAGCAGGATCCAGATA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 658-755, - strand, RNAz p=0.80266 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 658-755, - strand, RNAz p=0.80266 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 35-755, gnl|bosTau2|chr6 (58694411-58693681) | |
| 35-755, gnl|canFam2|chr32 (13904179-13905127) | |
| 35-755, gnl|dasNov1|scaffold_3487 (90473-91377) | |
| 35-755, gnl|echTel1|scaffold_319397 (6136-5195) | |
| 35-755, gnl|hg17|chr4 (88807168-88808079) | |
| 35-755, gnl|Hg17|chr4 (88808078-88807375) | |
| 35-755, gnl|loxAfr1|scaffold_1673 (86657-87573) | |
| 35-755, gnl|mm7|chr5 (103302474-103303366) | |
| 35-755, gnl|Mm7|chr5 (103303365-103302679) | |
| 35-755, gnl|oryCun1|scaffold_208245 (43714-42833) | |
| 35-755, gnl|panTro1|chr3 (104796466-104797378) | |
| 35-755, gnl|rheMac2|chr5 (80501490-80502405) | |
| 35-755, gnl|rn3|chr14 (6766879-6765980) | |
| 994-1367, gnl|bosTau2|chr6 (58659395-58659028) | |
| 994-1367, gnl|canFam2|chr32 (13874779-13875370) | |
| 994-1367, gnl|dasNov1|scaffold_3487 (54520-55103) | |
| 994-1367, gnl|echTel1|scaffold_319397 (57226-56675) | |
| 994-1367, gnl|hg17|chr4 (88772443-88773024) | |
| 994-1367, gnl|Hg17|chr4 (88772931-88772543) | |
| 994-1367, gnl|mm7|chr5 (103282172-103282741) | |
| 994-1367, gnl|Mm7|chr5 (103282678-103282263) | |
| 994-1367, gnl|oryCun1|scaffold_208245 (73102-72540) | |
| 994-1367, gnl|panTro1|chr3 (104760996-104761577) | |
| 994-1367, gnl|rheMac2|chr5 (80455788-80456369) | |
| 994-1367, gnl|rn3|chr14 (6784886-6784314) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-755, gnl|bosTau2|chr6 (58694411-58693681) | |
| 35-755, gnl|canFam2|chr32 (13904179-13905127) | |
| 35-755, gnl|dasNov1|scaffold_3487 (90473-91377) | |
| 35-755, gnl|echTel1|scaffold_319397 (6136-5195) | |
| 35-755, gnl|hg17|chr4 (88807168-88808079) | |
| 35-755, gnl|Hg17|chr4 (88808078-88807375) | |
| 35-755, gnl|loxAfr1|scaffold_1673 (86657-87573) | |
| 35-755, gnl|mm7|chr5 (103302474-103303366) | |
| 35-755, gnl|Mm7|chr5 (103303365-103302679) | |
| 35-755, gnl|oryCun1|scaffold_208245 (43714-42833) | |
| 35-755, gnl|panTro1|chr3 (104796466-104797378) | |
| 35-755, gnl|rheMac2|chr5 (80501490-80502405) | |
| 35-755, gnl|rn3|chr14 (6766879-6765980) | |
| 994-1367, gnl|bosTau2|chr6 (58659395-58659028) | |
| 994-1367, gnl|canFam2|chr32 (13874779-13875370) | |
| 994-1367, gnl|dasNov1|scaffold_3487 (54520-55103) | |
| 994-1367, gnl|echTel1|scaffold_319397 (57226-56675) | |
| 994-1367, gnl|hg17|chr4 (88772443-88773024) | |
| 994-1367, gnl|Hg17|chr4 (88772931-88772543) | |
| 994-1367, gnl|mm7|chr5 (103282172-103282741) | |
| 994-1367, gnl|Mm7|chr5 (103282678-103282263) | |
| 994-1367, gnl|oryCun1|scaffold_208245 (73102-72540) | |
| 994-1367, gnl|panTro1|chr3 (104760996-104761577) | |
| 994-1367, gnl|rheMac2|chr5 (80455788-80456369) | |
| 994-1367, gnl|rn3|chr14 (6784886-6784314) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ebs (0.236602) | |
| nca (0.136874) | |
| ese (0.126502) | |
| bla (0.124347) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ebs (0.236602) | |
| nca (0.136874) | |
| ese (0.126502) | |
| bla (0.124347) |