Ss1.1-Liv1-LVR010066G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATTTTAACCAGTGTGTAAAGACGGCTCTTAGGTCATCGGCTCTCCGGACCCTTCTCTT CAGAGAATTGTGGTTTATAGCAAATCACTGCTGGGATGAAGCTTTATAGCTTTGCAGTCC TGGTAGCCGCCGTTCTCCTCTGTGAGCAGGATGTCTTCGCGTTTCAGAGTGGCCAGGTTT TATCTGCTCTTCCTAGAACCTCTAGGCAAGTTCAAATTCTGCAGAATCTTACTACAACGT ATGAGATTGTGCTCTGGCAGCCAGTAACAGCTGATGTAATTGAGAAGAAAAAAGAAGTCC ATTTTTTTGTGAATGCATCTGATGTAAGCGCTGTGAAAACTCATTTAAATGAGAGCGGAA TTCCATCCAGTGTCTTGTTGGAAAATGTGGAAGACCTGATCCAGCAGCAGACTTCCAACG ACACCGTCAGCCCCCGGGCCTCGTCCTCGTACTACGAACACTATCACTCACTAGATGAGA TCTATTCTTGGATAGAGGTTATAACTGAGCGGCATCCTGATATGATTGAAAAAATCCACA TTGGATCCTCGTATGAGAAGCGCCCACTTTATGTTTTAAAGGTTTCTACAAAAGAACAAA AGGCCAAAACTGCCGTCTGGATTGACTGTGGAATCCATGCCCGAGAATGGATCTCTCCTG CTTTCTGCTTGTGGTTCATAGGCCATGCAACTCATTTCTATGGGGCAGAAAAACTTTACA CCAGTCTTCTGAGGCACATGGACTTCTATGTTATGCCAGTGGTTAATGTGGATGGTTATG ACTACACGTGGAAAAAGAATCGGATGTGGAGGAAGAACCGTTCTTTTCATGAAAATAATC CTTGCATTGGAACAGACCTGAACAGGAACTTTGCCTCCAAACACTGGTGTGAGGAAGGTG CCTCAAGTTTCTCGTGCTCAGAAACCTACTGTGGACCTTACCCAGAGTCGGAACCAGAAG TGAAGGCGGTGGCCGATTTCCTGAGAAGAAACATCAACCACATCAAAGCTTACATCAGCA TGCACTCGTACTCCCAGAAGATCGTGTTTCCATATTCCTATAGCAGAAGCAAAACCAAAG ACCACGAGGAACTGTCCCTGTTGGCCAGTGAAGCAGTCCATGCCATTGAGAAAACCAGTA AACATATCAGATACACGCATGGCAGTGGTTCAGAAAGTTTATATCTAGCTCCTGGAGGTT CGGATGACTGGATCTATGACTTGGGCATCAAATATTCGTTTACAATTGAACTTCGAGATA CAGGCAGATTTGGATTCTTGCTGCCAGCGCGTTTCATCAAACCCACTTGTAGAGAAGCTT TCGCTGCTGTCTCTAAAATAGCTTGGCATGTCATCAGAAATGTTTAATGCCCTTGATTTT TTTCCCCTTCGGTTCCCAGAGTGAAATTTACTGATTCCAGCAAGATCAAATCATTGTACC AGTTTCTTTTTATCAGTAGTTTTGATAAAAGGTTTTCCTATTACTTAGTTTTGTCAAAGA AAAAAATAAATGCTACCTTAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATTTTAACCAGTGTGTAAAGACGGCTCTTAGGTCATCGGCTCTCCGGACCCTTCTCTT CAGAGAATTGTGGTTTATAGCAAATCACTGCTGGGATGAAGCTTTATAGCTTTGCAGTCC TGGTAGCCGCCGTTCTCCTCTGTGAGCAGGATGTCTTCGCGTTTCAGAGTGGCCAGGTTT TATCTGCTCTTCCTAGAACCTCTAGGCAAGTTCAAATTCTGCAGAATCTTACTACAACGT ATGAGATTGTGCTCTGGCAGCCAGTAACAGCTGATGTAATTGAGAAGAAAAAAGAAGTCC ATTTTTTTGTGAATGCATCTGATGTAAGCGCTGTGAAAACTCATTTAAATGAGAGCGGAA TTCCATCCAGTGTCTTGTTGGAAAATGTGGAAGACCTGATCCAGCAGCAGACTTCCAACG ACACCGTCAGCCCCCGGGCCTCGTCCTCGTACTACGAACACTATCACTCACTAGATGAGA TCTATTCTTGGATAGAGGTTATAACTGAGCGGCATCCTGATATGATTGAAAAAATCCACA TTGGATCCTCGTATGAGAAGCGCCCACTTTATGTTTTAAAGGTTTCTACAAAAGAACAAA AGGCCAAAACTGCCGTCTGGATTGACTGTGGAATCCATGCCCGAGAATGGATCTCTCCTG CTTTCTGCTTGTGGTTCATAGGCCATGCAACTCATTTCTATGGGGCAGAAAAACTTTACA CCAGTCTTCTGAGGCACATGGACTTCTATGTTATGCCAGTGGTTAATGTGGATGGTTATG ACTACACGTGGAAAAAGAATCGGATGTGGAGGAAGAACCGTTCTTTTCATGAAAATAATC CTTGCATTGGAACAGACCTGAACAGGAACTTTGCCTCCAAACACTGGTGTGAGGAAGGTG CCTCAAGTTTCTCGTGCTCAGAAACCTACTGTGGACCTTACCCAGAGTCGGAACCAGAAG TGAAGGCGGTGGCCGATTTCCTGAGAAGAAACATCAACCACATCAAAGCTTACATCAGCA TGCACTCGTACTCCCAGAAGATCGTGTTTCCATATTCCTATAGCAGAAGCAAAACCAAAG ACCACGAGGAACTGTCCCTGTTGGCCAGTGAAGCAGTCCATGCCATTGAGAAAACCAGTA AACATATCAGATACACGCATGGCAGTGGTTCAGAAAGTTTATATCTAGCTCCTGGAGGTT CGGATGACTGGATCTATGACTTGGGCATCAAATATTCGTTTACAATTGAACTTCGAGATA CAGGCAGATTTGGATTCTTGCTGCCAGCGCGTTTCATCAAACCCACTTGTAGAGAAGCTT TCGCTGCTGTCTCTAAAATAGCTTGGCATGTCATCAGAAATGTTTAATGCCCTTGATTTT TTTCCCCTTCGGTTCCCAGAGTGAAATTTACTGATTCCAGCAAGATCAAATCATTGTACC AGTTTCTTTTTATCAGTAGTTTTGATAAAAGGTTTTCCTATTACTTAGTTTTGTCAAAGA AAAAAATAAATGCTACCTTAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-169, gnl|bosTau2|chr12 (6697558-6697390) | |
| 1-169, gnl|Hg17|chr13 (45577240-45577072) | |
| 1-169, gnl|Mm7|chr14 (69923928-69924087) | |
| 244-370, gnl|bosTau2|chr12 (6677581-6677455) | |
| 244-370, gnl|canFam2|chr22 (8036337-8036095) | |
| 244-370, gnl|dasNov1|scaffold_194222 (15-243) | |
| 244-370, gnl|echTel1|scaffold_190942 (6430-6188) | |
| 244-370, gnl|hg17|chr13 (45556318-45556561) | |
| 244-370, gnl|Hg17|chr13 (45556481-45556355) | |
| 244-370, gnl|loxAfr1|scaffold_8162 (37555-37310) | |
| 244-370, gnl|mm7|chr14 (69938364-69938116) | |
| 244-370, gnl|Mm7|chr14 (69938197-69938323) | |
| 244-370, gnl|monDom2|scaffold_64 (8815518-8815713) | |
| 244-370, gnl|oryCun1|scaffold_200644 (8911-8677) | |
| 244-370, gnl|panTro1|chr14 (45272797-45273040) | |
| 244-370, gnl|rheMac2|chr17 (24956305-24956548) | |
| 244-370, gnl|rn3|chr15 (56144392-56144145) | |
| 478-583, gnl|bosTau2|chr12 (6671796-6671691) | |
| 478-583, gnl|canFam2|chr22 (8041315-8041207) | |
| 478-583, gnl|dasNov1|scaffold_3976 (58992-59100) | |
| 478-583, gnl|echTel1|scaffold_190942 (12605-12497) | |
| 478-583, gnl|fr1|chrUn (218489698-218489590) | |
| 478-583, gnl|hg17|chr13 (45550933-45551041) | |
| 478-583, gnl|Hg17|chr13 (45551039-45550934) | |
| 478-583, gnl|loxAfr1|scaffold_8162 (43150-43042) | |
| 478-583, gnl|mm7|chr14 (69946090-69945982) | |
| 478-583, gnl|Mm7|chr14 (69945982-69946087) | |
| 478-583, gnl|monDom2|scaffold_64 (8812568-8812676) | |
| 478-583, gnl|oryCun1|scaffold_200644 (11662-11554) | |
| 478-583, gnl|panTro1|chr14 (45267414-45267522) | |
| 478-583, gnl|rheMac2|chr17 (24950958-24951066) | |
| 478-583, gnl|rn3|chr15 (56151884-56151776) | |
| 689-797, gnl|bosTau2|chr12 (6660161-6660053) | |
| 689-797, gnl|Hg17|chr13 (45539551-45539443) | |
| 689-797, gnl|Mm7|chr14 (69951311-69951419) | |
| 894-1094, gnl|bosTau2|chr12 (6647950-6647750) | |
| 894-1094, gnl|canFam2|chr22 (8059116-8058844) | |
| 894-1094, gnl|danRer3|chr1 (32076127-32075855) | |
| 894-1094, gnl|dasNov1|scaffold_3976 (45946-46221) | |
| 894-1094, gnl|echTel1|scaffold_209749 (7263-7522) | |
| 894-1094, gnl|fr1|chrUn (218491559-218491334) | |
| 894-1094, gnl|galGal2|chr1 (160164187-160164441) | |
| 894-1094, gnl|hg17|chr13 (45530275-45530550) | |
| 894-1094, gnl|Hg17|chr13 (45530515-45530315) | |
| 894-1094, gnl|loxAfr1|scaffold_10931 (4277-4007) | |
| 894-1094, gnl|mm7|chr14 (69955800-69955527) | |
| 894-1094, gnl|Mm7|chr14 (69955560-69955760) | |
| 894-1094, gnl|monDom2|scaffold_64 (8794595-8794878) | |
| 894-1094, gnl|oryCun1|scaffold_207856 (135824-135549) | |
| 894-1094, gnl|panTro1|chr14 (45246215-45246490) | |
| 894-1094, gnl|rheMac2|chr17 (24931827-24932102) | |
| 894-1094, gnl|rn3|chr15 (56161037-56160772) | |
| 894-1094, gnl|tetNig1|chr3 (6270768-6270542) | |
| 894-1094, gnl|xenTro1|scaffold_809 (21710-21456) | |
| 1180-1524, gnl|bosTau2|chr12 (6640133-6639790) | |
| 1180-1524, gnl|Hg17|chr13 (45525936-45525589) | |
| 1180-1524, gnl|Mm7|chr14 (69963801-69964115) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-169, gnl|bosTau2|chr12 (6697558-6697390) | |
| 1-169, gnl|Hg17|chr13 (45577240-45577072) | |
| 1-169, gnl|Mm7|chr14 (69923928-69924087) | |
| 244-370, gnl|bosTau2|chr12 (6677581-6677455) | |
| 244-370, gnl|canFam2|chr22 (8036337-8036095) | |
| 244-370, gnl|dasNov1|scaffold_194222 (15-243) | |
| 244-370, gnl|echTel1|scaffold_190942 (6430-6188) | |
| 244-370, gnl|hg17|chr13 (45556318-45556561) | |
| 244-370, gnl|Hg17|chr13 (45556481-45556355) | |
| 244-370, gnl|loxAfr1|scaffold_8162 (37555-37310) | |
| 244-370, gnl|mm7|chr14 (69938364-69938116) | |
| 244-370, gnl|Mm7|chr14 (69938197-69938323) | |
| 244-370, gnl|monDom2|scaffold_64 (8815518-8815713) | |
| 244-370, gnl|oryCun1|scaffold_200644 (8911-8677) | |
| 244-370, gnl|panTro1|chr14 (45272797-45273040) | |
| 244-370, gnl|rheMac2|chr17 (24956305-24956548) | |
| 244-370, gnl|rn3|chr15 (56144392-56144145) | |
| 478-583, gnl|bosTau2|chr12 (6671796-6671691) | |
| 478-583, gnl|canFam2|chr22 (8041315-8041207) | |
| 478-583, gnl|dasNov1|scaffold_3976 (58992-59100) | |
| 478-583, gnl|echTel1|scaffold_190942 (12605-12497) | |
| 478-583, gnl|fr1|chrUn (218489698-218489590) | |
| 478-583, gnl|hg17|chr13 (45550933-45551041) | |
| 478-583, gnl|Hg17|chr13 (45551039-45550934) | |
| 478-583, gnl|loxAfr1|scaffold_8162 (43150-43042) | |
| 478-583, gnl|mm7|chr14 (69946090-69945982) | |
| 478-583, gnl|Mm7|chr14 (69945982-69946087) | |
| 478-583, gnl|monDom2|scaffold_64 (8812568-8812676) | |
| 478-583, gnl|oryCun1|scaffold_200644 (11662-11554) | |
| 478-583, gnl|panTro1|chr14 (45267414-45267522) | |
| 478-583, gnl|rheMac2|chr17 (24950958-24951066) | |
| 478-583, gnl|rn3|chr15 (56151884-56151776) | |
| 689-797, gnl|bosTau2|chr12 (6660161-6660053) | |
| 689-797, gnl|Hg17|chr13 (45539551-45539443) | |
| 689-797, gnl|Mm7|chr14 (69951311-69951419) | |
| 894-1094, gnl|bosTau2|chr12 (6647950-6647750) | |
| 894-1094, gnl|canFam2|chr22 (8059116-8058844) | |
| 894-1094, gnl|danRer3|chr1 (32076127-32075855) | |
| 894-1094, gnl|dasNov1|scaffold_3976 (45946-46221) | |
| 894-1094, gnl|echTel1|scaffold_209749 (7263-7522) | |
| 894-1094, gnl|fr1|chrUn (218491559-218491334) | |
| 894-1094, gnl|galGal2|chr1 (160164187-160164441) | |
| 894-1094, gnl|hg17|chr13 (45530275-45530550) | |
| 894-1094, gnl|Hg17|chr13 (45530515-45530315) | |
| 894-1094, gnl|loxAfr1|scaffold_10931 (4277-4007) | |
| 894-1094, gnl|mm7|chr14 (69955800-69955527) | |
| 894-1094, gnl|Mm7|chr14 (69955560-69955760) | |
| 894-1094, gnl|monDom2|scaffold_64 (8794595-8794878) | |
| 894-1094, gnl|oryCun1|scaffold_207856 (135824-135549) | |
| 894-1094, gnl|panTro1|chr14 (45246215-45246490) | |
| 894-1094, gnl|rheMac2|chr17 (24931827-24932102) | |
| 894-1094, gnl|rn3|chr15 (56161037-56160772) | |
| 894-1094, gnl|tetNig1|chr3 (6270768-6270542) | |
| 894-1094, gnl|xenTro1|scaffold_809 (21710-21456) | |
| 1180-1524, gnl|bosTau2|chr12 (6640133-6639790) | |
| 1180-1524, gnl|Hg17|chr13 (45525936-45525589) | |
| 1180-1524, gnl|Mm7|chr14 (69963801-69964115) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (3.00978) | |
| cli (0.764059) | |
| fli (0.608643) |