Ss1.1-Liv1-LVR010067A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTAGTCTTTGGCTCTACGCAGAAGCCAATGCCGAGAGTAAGCTCCCGGAATGGGTTGGC TGCCGCGTCTCCCCACGGGGCCTGGGATGGCGAGGAGGACGGCGGGGGCCTGCGGAATGG CACTTCTGACATGTCATTTGAGGAGCTGTTGGAATTGCAGAGCCAAGTGGGGACTAAGAC ATACAAACAATTGGTAACTGGAAACAGCACTAAGAAGCAAAGTTCTAGACCACCTGTCCA GAAAGCATGTGTGGCCGATAAGCACAGGCCTCTGGAAATGTCAGCCAAGGTCCGTGTGCC ATTTTTGCGTCAAGTTGTCCCCATCAGTAAGAAGGTAGCCCGCGACCCGCGCTTTGATGA TCTGTCAGGGGAATATAATCCTGAGGTGTTTGATAAAACGTATCAGTTCCTAAATGACAT CCGAGCCAGAGAGAAAGAGCTTGTGAAAAAACAGTTGAAGAAGCGCCGCTCAGGGGAGGA GCATGAGAAACTGCAGCAGCTGCTTCAGCGCATGGAGCAGCAAGACATGGCACAGCAGGA GCGAAAGCGGCAGCAGGAGCTGCGCCTGGCCCTGAAGCAGGAGCGGCGGGCTCAGGCCCA GCAGGGCCATCGGCCATACTTCCTGAAGAAATCTGAGCAGCGCCAGTTGGTCCTAGCTGA GAAGTTCAAGGAGCTGAAACGCAGCAAGAAGCTCGAGAGCTTCTTGAGTCGAAAGAGACG CCGAAATGCAGGCAAGGACAGAAGACATCTCCCTTTGAGCAAAGAGTAATAAGAAAATGT CCTCAGCTCTTCTGCTGCCCCAGCAAGAAATGCAGCTCCCGGGACACATTTGGGCTGGGC CTGTTCTGGTCCTTTCCCACTCAAGGGCAAGGCTCACAGCTGCCTTGGAACTAGATTGGC TCAGAGATGACTGAGAGGGTCTGGGCTGCCCCAGGGCTGGACGAGAAGAGCAGTTCAGCT TTGTGCCGCAACGCACTTCCTCTCCTTGGACCTGGTTCACCGTGTCCTCCTGTCCTTCTC CCACTTGCCTTGAGACAGTGATTCTGGTATAGAAGGAAAAGGACCAGTGAGTGACACTGA GGCCGGTTGAAGGCCATAGGGTCTGCGAGTGACTCCCAGGACTGAGTCTTTATATGGGAG CCAGTTCATAAACACTCTTGTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTAGTCTTTGGCTCTACGCAGAAGCCAATGCCGAGAGTAAGCTCCCGGAATGGGTTGGC TGCCGCGTCTCCCCACGGGGCCTGGGATGGCGAGGAGGACGGCGGGGGCCTGCGGAATGG CACTTCTGACATGTCATTTGAGGAGCTGTTGGAATTGCAGAGCCAAGTGGGGACTAAGAC ATACAAACAATTGGTAACTGGAAACAGCACTAAGAAGCAAAGTTCTAGACCACCTGTCCA GAAAGCATGTGTGGCCGATAAGCACAGGCCTCTGGAAATGTCAGCCAAGGTCCGTGTGCC ATTTTTGCGTCAAGTTGTCCCCATCAGTAAGAAGGTAGCCCGCGACCCGCGCTTTGATGA TCTGTCAGGGGAATATAATCCTGAGGTGTTTGATAAAACGTATCAGTTCCTAAATGACAT CCGAGCCAGAGAGAAAGAGCTTGTGAAAAAACAGTTGAAGAAGCGCCGCTCAGGGGAGGA GCATGAGAAACTGCAGCAGCTGCTTCAGCGCATGGAGCAGCAAGACATGGCACAGCAGGA GCGAAAGCGGCAGCAGGAGCTGCGCCTGGCCCTGAAGCAGGAGCGGCGGGCTCAGGCCCA GCAGGGCCATCGGCCATACTTCCTGAAGAAATCTGAGCAGCGCCAGTTGGTCCTAGCTGA GAAGTTCAAGGAGCTGAAACGCAGCAAGAAGCTCGAGAGCTTCTTGAGTCGAAAGAGACG CCGAAATGCAGGCAAGGACAGAAGACATCTCCCTTTGAGCAAAGAGTAATAAGAAAATGT CCTCAGCTCTTCTGCTGCCCCAGCAAGAAATGCAGCTCCCGGGACACATTTGGGCTGGGC CTGTTCTGGTCCTTTCCCACTCAAGGGCAAGGCTCACAGCTGCCTTGGAACTAGATTGGC TCAGAGATGACTGAGAGGGTCTGGGCTGCCCCAGGGCTGGACGAGAAGAGCAGTTCAGCT TTGTGCCGCAACGCACTTCCTCTCCTTGGACCTGGTTCACCGTGTCCTCCTGTCCTTCTC CCACTTGCCTTGAGACAGTGATTCTGGTATAGAAGGAAAAGGACCAGTGAGTGACACTGA GGCCGGTTGAAGGCCATAGGGTCTGCGAGTGACTCCCAGGACTGAGTCTTTATATGGGAG CCAGTTCATAAACACTCTTGTCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 633-791, + strand, RNAz p=0.833541 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 633-791, + strand, RNAz p=0.833541 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_033112, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 121-268, gnl|bosTau2|chr23 (13074463-13074610) | |
| 121-268, gnl|canFam2|chr12 (14555019-14555130) | |
| 121-268, gnl|dasNov1|scaffold_21929 (3273-3164) | |
| 121-268, gnl|fr1|chrUn (220894840-220894742) | |
| 121-268, gnl|hg17|chr6 (43100684-43100797) | |
| 121-268, gnl|Hg17|chr6 (43100702-43100849) | |
| 121-268, gnl|mm7|chr17 (44801674-44801563) | |
| 121-268, gnl|Mm7|chr17 (44801656-44801518) | |
| 121-268, gnl|monDom2|scaffold_0 (198625860-198625743) | |
| 121-268, gnl|oryCun1|scaffold_173098 (18323-18443) | |
| 121-268, gnl|panTro1|chr5 (43698151-43698264) | |
| 121-268, gnl|rheMac2|chr4 (42913674-42913787) | |
| 121-268, gnl|rn3|chr9 (10041374-10041263) | |
| 121-268, gnl|tetNig1|chrUn_random (107408283-107408401) | |
| 332-439, gnl|bosTau2|chr23 (13074886-13074993) | |
| 332-439, gnl|canFam2|chr12 (14555884-14556010) | |
| 332-439, gnl|dasNov1|scaffold_21929 (3050-2947) | |
| 332-439, gnl|fr1|chrUn (220894523-220894400) | |
| 332-439, gnl|galGal2|chr3 (4142610-4142734) | |
| 332-439, gnl|hg17|chr6 (43101735-43101860) | |
| 332-439, gnl|Hg17|chr6 (43101750-43101857) | |
| 332-439, gnl|loxAfr1|scaffold_15673 (44588-44713) | |
| 332-439, gnl|mm7|chr17 (44801273-44801148) | |
| 332-439, gnl|Mm7|chr17 (44801256-44801149) | |
| 332-439, gnl|monDom2|scaffold_0 (198624737-198624613) | |
| 332-439, gnl|oryCun1|scaffold_173098 (18781-18902) | |
| 332-439, gnl|panTro1|chr5 (43699192-43699317) | |
| 332-439, gnl|rheMac2|chr4 (42914717-42914842) | |
| 332-439, gnl|rn3|chr9 (10040991-10040866) | |
| 332-439, gnl|tetNig1|chrUn_random (107408651-107408752) | |
| 633-1162, gnl|bosTau2|chr23 (13075994-13076500) | |
| 633-1162, gnl|Hg17|chr6 (43104808-43105308) | |
| 633-1162, gnl|Mm7|chr17 (44796899-44796434) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-268, gnl|bosTau2|chr23 (13074463-13074610) | |
| 121-268, gnl|canFam2|chr12 (14555019-14555130) | |
| 121-268, gnl|dasNov1|scaffold_21929 (3273-3164) | |
| 121-268, gnl|fr1|chrUn (220894840-220894742) | |
| 121-268, gnl|hg17|chr6 (43100684-43100797) | |
| 121-268, gnl|Hg17|chr6 (43100702-43100849) | |
| 121-268, gnl|mm7|chr17 (44801674-44801563) | |
| 121-268, gnl|Mm7|chr17 (44801656-44801518) | |
| 121-268, gnl|monDom2|scaffold_0 (198625860-198625743) | |
| 121-268, gnl|oryCun1|scaffold_173098 (18323-18443) | |
| 121-268, gnl|panTro1|chr5 (43698151-43698264) | |
| 121-268, gnl|rheMac2|chr4 (42913674-42913787) | |
| 121-268, gnl|rn3|chr9 (10041374-10041263) | |
| 121-268, gnl|tetNig1|chrUn_random (107408283-107408401) | |
| 332-439, gnl|bosTau2|chr23 (13074886-13074993) | |
| 332-439, gnl|canFam2|chr12 (14555884-14556010) | |
| 332-439, gnl|dasNov1|scaffold_21929 (3050-2947) | |
| 332-439, gnl|fr1|chrUn (220894523-220894400) | |
| 332-439, gnl|galGal2|chr3 (4142610-4142734) | |
| 332-439, gnl|hg17|chr6 (43101735-43101860) | |
| 332-439, gnl|Hg17|chr6 (43101750-43101857) | |
| 332-439, gnl|loxAfr1|scaffold_15673 (44588-44713) | |
| 332-439, gnl|mm7|chr17 (44801273-44801148) | |
| 332-439, gnl|Mm7|chr17 (44801256-44801149) | |
| 332-439, gnl|monDom2|scaffold_0 (198624737-198624613) | |
| 332-439, gnl|oryCun1|scaffold_173098 (18781-18902) | |
| 332-439, gnl|panTro1|chr5 (43699192-43699317) | |
| 332-439, gnl|rheMac2|chr4 (42914717-42914842) | |
| 332-439, gnl|rn3|chr9 (10040991-10040866) | |
| 332-439, gnl|tetNig1|chrUn_random (107408651-107408752) | |
| 633-1162, gnl|bosTau2|chr23 (13075994-13076500) | |
| 633-1162, gnl|Hg17|chr6 (43104808-43105308) | |
| 633-1162, gnl|Mm7|chr17 (44796899-44796434) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| hea (0.408998) | |
| sto (0.359648) | |
| med (0.232504) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nje (0.16592) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| sto (0.359648) | |
| med (0.232504) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nje (0.16592) | |
| liv (0.146284) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |