Non-Coding RNA Search

Ss1.1-Liv1-LVR010067D09.5.5

Sequence:


               
               AGGCGGGAGCGGGGGAGGCCCGAGCCGCCGAGCCCTGCCCCACGCCCCTTCCGCGCCGCC
CACCGCCCGCGGCGGATCCTGGAGCATCTAAGAGGCGCTGCGAGCCGGGCGGGTGGCCGG
GGGACGGACGCGGCGCCGCGGCGGGAGCGCGGAGCTGGGCGAGGGGCGCACGATCCCCCC
TGCGTGGAGGCGCAATGGAGTGGGCCGGCCGGGGAGTTGAGGGCTCCGGGTTTGAACCTG
CCAACTTCTCCAGCGGGCAGGGGCGAGCGCCAGGGCGGCGGCGAGGGCGAGTGACACGCA
GAGCTGAAACCATGGTTCAGCAGGTGCTCTACCGGGCGCTGGTCTCCACCAAGTGGCTGG
CGGAGTCTGTCCGGACTGGCAAGCTGGGGCCAAGCCTGCGAGTGCTGGACGCCTCCTGGT
ACTCGCCGGGCACCCGCGATGCTCGCAAGGAATACCTAGAGCGCCATGTGCCCGGCGCGT
CCTTCTTTGACATAGAGGAGTGCCGGAACAGAGAGTCACCCTACGAGATGATGCTGCCCA
CCGAGGCGGGCTTCGCTGACTACGTGGGCCGCCTGGGCATCAGCAACAACACGCACGTGG
TGGTGTATGATGGTGATAACCTGGGCAGCTTCTATGCGCCGCGGGTGTGGTGGATGTTCC
GGGTGTTTGGCCACCGCACCGTGTCAGTGCTCAATGGTGGCTTCCGAAACTGGCTGAAGG
AGGGCCACCCAGTGACATCTGAGCCCTCACACCCAGAGCCAGCCATCTTCAAAGCCACAC
TGGACCGGTCCCTGCTCAAGACCTACGAGCAGGTGCTGGAGAACCTCGAATCAAAGAGGT
TCCAGCTGGTGGATTCTCGGGCTCAAGGGCGGTACCTGGGCACGGAGCCGGAGCCAGATG
CAGTAGGACTGGACTCCGGCCACATCCAAGGCTCAGTCAACATGCCCTTCATGAACTTCC
TGACGGAGGACGGCTTCGAGAAGGGTCCAGAGGAGCTCCGAGCCATGTTTGAAGCCAAGA
AGGTGGACCTCACAAAGCCCCTCATTGCCACGTGCCGGAAGGGTGTCACCGCCTGCCACA
TTGCCCTGGCCGCCTACCTCTGCGGCAAGCCCGATGTGGCCATCTATGACGGCTCCTGGT
TCGAGTGGTTCCACCGGGCTCCCCCGGAGACCCGAGTGTCCCAGGGGAAGGGCGGGAAGG
CCTGAGCGGTGGCCTCTCCTCCCGTCGCTCACCGCTCCTGCCAGTGGAGTGACCCTGGCA
CAGCCCGCGGCTGGTCCATGCCCCGTGGGCAAAGGAAAGCGATGCGTTTTTAGAGTTGAT
GTGTAGAGTGCTCCTTCCCCCAACAACACTGGAGTAAACTTGGCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGGGAGCGGGGGAGGCCCGAGCCGCCGAGCCCTGCCCCACGCCCCTTCCGCGCCGCC
CACCGCCCGCGGCGGATCCTGGAGCATCTAAGAGGCGCTGCGAGCCGGGCGGGTGGCCGG
GGGACGGACGCGGCGCCGCGGCGGGAGCGCGGAGCTGGGCGAGGGGCGCACGATCCCCCC
TGCGTGGAGGCGCAATGGAGTGGGCCGGCCGGGGAGTTGAGGGCTCCGGGTTTGAACCTG
CCAACTTCTCCAGCGGGCAGGGGCGAGCGCCAGGGCGGCGGCGAGGGCGAGTGACACGCA
GAGCTGAAACCATGGTTCAGCAGGTGCTCTACCGGGCGCTGGTCTCCACCAAGTGGCTGG
CGGAGTCTGTCCGGACTGGCAAGCTGGGGCCAAGCCTGCGAGTGCTGGACGCCTCCTGGT
ACTCGCCGGGCACCCGCGATGCTCGCAAGGAATACCTAGAGCGCCATGTGCCCGGCGCGT
CCTTCTTTGACATAGAGGAGTGCCGGAACAGAGAGTCACCCTACGAGATGATGCTGCCCA
CCGAGGCGGGCTTCGCTGACTACGTGGGCCGCCTGGGCATCAGCAACAACACGCACGTGG
TGGTGTATGATGGTGATAACCTGGGCAGCTTCTATGCGCCGCGGGTGTGGTGGATGTTCC
GGGTGTTTGGCCACCGCACCGTGTCAGTGCTCAATGGTGGCTTCCGAAACTGGCTGAAGG
AGGGCCACCCAGTGACATCTGAGCCCTCACACCCAGAGCCAGCCATCTTCAAAGCCACAC
TGGACCGGTCCCTGCTCAAGACCTACGAGCAGGTGCTGGAGAACCTCGAATCAAAGAGGT
TCCAGCTGGTGGATTCTCGGGCTCAAGGGCGGTACCTGGGCACGGAGCCGGAGCCAGATG
CAGTAGGACTGGACTCCGGCCACATCCAAGGCTCAGTCAACATGCCCTTCATGAACTTCC
TGACGGAGGACGGCTTCGAGAAGGGTCCAGAGGAGCTCCGAGCCATGTTTGAAGCCAAGA
AGGTGGACCTCACAAAGCCCCTCATTGCCACGTGCCGGAAGGGTGTCACCGCCTGCCACA
TTGCCCTGGCCGCCTACCTCTGCGGCAAGCCCGATGTGGCCATCTATGACGGCTCCTGGT
TCGAGTGGTTCCACCGGGCTCCCCCGGAGACCCGAGTGTCCCAGGGGAAGGGCGGGAAGG
CCTGAGCGGTGGCCTCTCCTCCCGTCGCTCACCGCTCCTGCCAGTGGAGTGACCCTGGCA
CAGCCCGCGGCTGGTCCATGCCCCGTGGGCAAAGGAAAGCGATGCGTTTTTAGAGTTGAT
GTGTAGAGTGCTCCTTCCCCCAACAACACTGGAGTAAACTTGGCCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|29135275|ref|NP_803455.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29135275|ref|NP_803455.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-907, + strand, RNAz p=0.957059

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-907, + strand, RNAz p=0.957059

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               291-907, gnl|bosTau2|chr5 (45233046-45232430)
               

               
               291-907, gnl|Hg17|chr22 (35739294-35738678)
               

               
               291-907, gnl|Mm7|chr15 (78488806-78488190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-907, gnl|bosTau2|chr5 (45233046-45232430)
               

               
               291-907, gnl|Hg17|chr22 (35739294-35738678)
               

               
               291-907, gnl|Mm7|chr15 (78488806-78488190)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               nco (0.970403)
               

               
               cli (0.91687)
               

               
               col (0.780031)
               

               
               fbs (0.701385)
               

               
               duo (0.518403)
               

               
               hyp (0.42851)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               nep (0.36785)
               

               
               cty (0.31224)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.970403)
               

               
               cli (0.91687)
               

               
               col (0.780031)
               

               
               fbs (0.701385)
               

               
               duo (0.518403)
               

               
               hyp (0.42851)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               nep (0.36785)
               

               
               cty (0.31224)
               

               
               eli (0.303628)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	291-907, gnl\|bosTau2\|chr5 (45233046-45232430)
	291-907, gnl\|Hg17\|chr22 (35739294-35738678)
	291-907, gnl\|Mm7\|chr15 (78488806-78488190)

	nco (0.970403)
	cli (0.91687)
	col (0.780031)
	fbs (0.701385)
	duo (0.518403)
	hyp (0.42851)
	nca (0.410621)
	fli (0.405762)
	nep (0.36785)
	cty (0.31224)
	eli (0.303628)
	eje (0.296501)
	cst (0.280073)
	ece (0.229305)
	mas (0.210305)
	sag (0.182715)
	ton (0.1755)
	fhi (0.169578)
	cki (0.165235)
	cov (0.132153)
	clu (0.119646)
	ebs (0.118301)