Non-Coding RNA Search

Ss1.1-Liv1-LVR010067E10.5.5

Sequence:


               
               AAATGGGCAGCGGCCCCTGGAAAGCCCAGCATTGCGGGCAGGTGGCGGCTCTGGGTCCAC
TCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGCAGAGGGAATGTCCCTCTTCCTGGC
TCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCT
TGCCTCAAAGATTGTGACCCTGAAGGACCAGATCAAGAAGCTGCCAGTGCACAACACCGC
CGTGGTCTCCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGTCTCTGACGAA
CCGTCATAAGAATATCATCTTCTCCCCGCTGAGCGTCTCCATGGCCTTGGCCTTCCTGTC
CTTGGGAGCCCGAGGCCCCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAATGTCAC
AGAGACCCCTGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGAGGACGCTCAACAG
GCCGAGCAACCTGCTGCAGCTGAGGTTGGGCAACGCCATGTTCATTGATGAGCAGCTGGA
GCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCTGTACCACTCCGAGGCCTTCCCCAC
TAACTTCCAGGATTTAGAAGCTGCCAGGAGACTCATTAATGACTATGTGAAGAACAAAAC
CGAGGGGAAAATCGTGGAGTTGATCAAGAGGCTTATCCCTGTGACTGAGGCCGTCCTGGT
GAATTACATTTACTTTAAAGCCCAGTGGATGACACACTTTGATCCCAACCTCACTACGGA
GGCAGATTTCTACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTAAGAA
CCTGACCGTGCCATACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTA
CACCAGCAATGACAGCACGCTTTTCATCCTCCCTGACGACGGCAGGATGGCGGCCGTGGA
AGCCAAGCTGCTCCCGGAGACGCTGAGAAGGTGGAGAGACTCCCTGCAGCCCAGGCGGAT
AGAAGCCCTCCACCTGCCACGGTTTTCCATCTCCAGCGACTATAAACTGCAGGAGATCCT
TCCCCGGCTGGGCATCCAGAAAATCTTCAGTGAGGAGGCTGACCTGTCAGGAATCACAGA
TACAACACCCTTGTGTGTTTCCCAGGTGGTCCACAGCGCCATGCTGGACGTGGATGAGGA
GGGCACGGAAGGAGCCGCGTCCACAGGAGTCGTCCTAGAAAAAAATTTCTTCGAGAATTT
CATTGTGCGATTTGACAGCCCCTTTCTGTTCGCCACGGTCCTCAGAGACACCCAGAGCAT
CATCTTTCTGGGCAAAGTCGTCAACCCCCGTCCAGCCTAGAGCTCCCCTCTGAGCCGTGG
GGCTTCTCTCTAAGGAGCTGGGTGCTCTGGGCCCTGGGGCAGCCTGGCCTCTACTCAGCC
ATGAGCTGCCTCACCTTGGCTGCTCCCGCTGACCCTTGGAAGGTGACAGTCACCTTCTGG
TGGCTCCACACACACAGGGGTCTGTGCCCTGCTCCGGGGAGGCTCTGAGACCTCCCACAG
CAATAAAGCATCTTTCTGAACTGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGGCAGCGGCCCCTGGAAAGCCCAGCATTGCGGGCAGGTGGCGGCTCTGGGTCCAC
TCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGCAGAGGGAATGTCCCTCTTCCTGGC
TCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCT
TGCCTCAAAGATTGTGACCCTGAAGGACCAGATCAAGAAGCTGCCAGTGCACAACACCGC
CGTGGTCTCCAGCAACACCGACTTCGCCTTCAGCCTCTACAAGCAGCTGTCTCTGACGAA
CCGTCATAAGAATATCATCTTCTCCCCGCTGAGCGTCTCCATGGCCTTGGCCTTCCTGTC
CTTGGGAGCCCGAGGCCCCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAATGTCAC
AGAGACCCCTGAGGCAGAAATCCACCAGGGCTTCCAGCACCTCCTGAGGACGCTCAACAG
GCCGAGCAACCTGCTGCAGCTGAGGTTGGGCAACGCCATGTTCATTGATGAGCAGCTGGA
GCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCTGTACCACTCCGAGGCCTTCCCCAC
TAACTTCCAGGATTTAGAAGCTGCCAGGAGACTCATTAATGACTATGTGAAGAACAAAAC
CGAGGGGAAAATCGTGGAGTTGATCAAGAGGCTTATCCCTGTGACTGAGGCCGTCCTGGT
GAATTACATTTACTTTAAAGCCCAGTGGATGACACACTTTGATCCCAACCTCACTACGGA
GGCAGATTTCTACGTGAGCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTAAGAA
CCTGACCGTGCCATACTTCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTA
CACCAGCAATGACAGCACGCTTTTCATCCTCCCTGACGACGGCAGGATGGCGGCCGTGGA
AGCCAAGCTGCTCCCGGAGACGCTGAGAAGGTGGAGAGACTCCCTGCAGCCCAGGCGGAT
AGAAGCCCTCCACCTGCCACGGTTTTCCATCTCCAGCGACTATAAACTGCAGGAGATCCT
TCCCCGGCTGGGCATCCAGAAAATCTTCAGTGAGGAGGCTGACCTGTCAGGAATCACAGA
TACAACACCCTTGTGTGTTTCCCAGGTGGTCCACAGCGCCATGCTGGACGTGGATGAGGA
GGGCACGGAAGGAGCCGCGTCCACAGGAGTCGTCCTAGAAAAAAATTTCTTCGAGAATTT
CATTGTGCGATTTGACAGCCCCTTTCTGTTCGCCACGGTCCTCAGAGACACCCAGAGCAT
CATCTTTCTGGGCAAAGTCGTCAACCCCCGTCCAGCCTAGAGCTCCCCTCTGAGCCGTGG
GGCTTCTCTCTAAGGAGCTGGGTGCTCTGGGCCCTGGGGCAGCCTGGCCTCTACTCAGCC
ATGAGCTGCCTCACCTTGGCTGCTCCCGCTGACCCTTGGAAGGTGACAGTCACCTTCTGG
TGGCTCCACACACACAGGGGTCTGTGCCCTGCTCCGGGGAGGCTCTGAGACCTCCCACAG
CAATAAAGCATCTTTCTGAACTGGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9968809|emb|CAC06757.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9968809|emb|CAC06757.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-431, + strand, RNAz p=0.583136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-431, + strand, RNAz p=0.583136

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC003559, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC003559, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               73-740, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               73-740, gnl|Hg17|chr14 (94150510-94151174)
               

               
               73-740, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1155-1576, gnl|bosTau2|chr21 (40700330-40699908)
               

               
               1155-1576, gnl|Hg17|chr14 (94159689-94160137)
               

               
               1155-1576, gnl|Mm7|chr12 (101907722-101908142)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-740, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               73-740, gnl|Hg17|chr14 (94150510-94151174)
               

               
               73-740, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1155-1576, gnl|bosTau2|chr21 (40700330-40699908)
               

               
               1155-1576, gnl|Hg17|chr14 (94159689-94160137)
               

               
               1155-1576, gnl|Mm7|chr12 (101907722-101908142)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eli (0.151814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)

	73-740, gnl\|bosTau2\|chr21 (40705409-40704769)
	73-740, gnl\|Hg17\|chr14 (94150510-94151174)
	73-740, gnl\|Mm7\|chr12 (101902962-101903629)

	1155-1576, gnl\|bosTau2\|chr21 (40700330-40699908)
	1155-1576, gnl\|Hg17\|chr14 (94159689-94160137)
	1155-1576, gnl\|Mm7\|chr12 (101907722-101908142)