Non-Coding RNA Search

Ss1.1-Liv1-LVR010067F12.5

Sequence:


               
               CGGTTCTCCCATTGGATTTCTGATTACAAAGTTTCCACCAATTCAGCTTCTCCCCTGACC
CCGAGGGTGCGTTCATGGGGCCCCGAGCCCTCCTCCATTGACCCAGCCCTGGGCGCGTCC
CCACTCCCTGAGGTATTTCTACACAGCCGTGTCCCGACCGAGTCGACGGGATCCCCGCTT
CTCCGTCGTCGGCTATGTAGACGACACGCAGTTCGTGCGGTTCGACAGCAATGCCCCGAA
TCCGAGGGAGGAGCCGCGGACACCGTGGGTGGAGCTGGAGGGCCCGGAGTATTGCGATCG
GAACACACGCATCTACAAGGACACCTCACAGAATTTCCAAGTGAGCCTGAATGTCCTGCG
CGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTACCAGTGGCTTTGTGGATGCTA
TGTTGCGCGGGACGGGCGCCTCCTCCGCGGGTACAGTCAGTTCGCCTATGACGGCGCGGA
TTACATCGTCCTGAACGAGGACCTGCGCTCCTGGACCGCGGTGGACATGGCGGCTCAGAT
CACTCGGCGCAAATGGGAGGAGGAAACTGTGGCAGAGCAGAGCAGAGCCTACCTGGAAGT
GGCATGCGTGCAGTCGCTCCACAGATACCTGGCGAACGGGAAGGAGACGCTACAGCGGTC
AGATCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACAATAAAGTCACCTTGAG
GTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTTCTCCCATTGGATTTCTGATTACAAAGTTTCCACCAATTCAGCTTCTCCCCTGACC
CCGAGGGTGCGTTCATGGGGCCCCGAGCCCTCCTCCATTGACCCAGCCCTGGGCGCGTCC
CCACTCCCTGAGGTATTTCTACACAGCCGTGTCCCGACCGAGTCGACGGGATCCCCGCTT
CTCCGTCGTCGGCTATGTAGACGACACGCAGTTCGTGCGGTTCGACAGCAATGCCCCGAA
TCCGAGGGAGGAGCCGCGGACACCGTGGGTGGAGCTGGAGGGCCCGGAGTATTGCGATCG
GAACACACGCATCTACAAGGACACCTCACAGAATTTCCAAGTGAGCCTGAATGTCCTGCG
CGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTACCAGTGGCTTTGTGGATGCTA
TGTTGCGCGGGACGGGCGCCTCCTCCGCGGGTACAGTCAGTTCGCCTATGACGGCGCGGA
TTACATCGTCCTGAACGAGGACCTGCGCTCCTGGACCGCGGTGGACATGGCGGCTCAGAT
CACTCGGCGCAAATGGGAGGAGGAAACTGTGGCAGAGCAGAGCAGAGCCTACCTGGAAGT
GGCATGCGTGCAGTCGCTCCACAGATACCTGGCGAACGGGAAGGAGACGCTACAGCGGTC
AGATCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACAATAAAGTCACCTTGAG
GTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61967776|gb|AAX56910.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61967776|gb|AAX56910.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               120-387, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               120-387, gnl|Hg17|chr6 (31432710-31432443)
               

               
               120-387, gnl|Mm7|chr17 (33358731-33358998)
               


               
               415-670, gnl|bosTau2|chr20 (36655623-36655873)
               

               
               415-670, gnl|Hg17|chr6 (31347071-31346829)
               

               
               415-670, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-387, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               120-387, gnl|Hg17|chr6 (31432710-31432443)
               

               
               120-387, gnl|Mm7|chr17 (33358731-33358998)
               


               
               415-670, gnl|bosTau2|chr20 (36655623-36655873)
               

               
               415-670, gnl|Hg17|chr6 (31347071-31346829)
               

               
               415-670, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               cty (0.10408)

	120-387, gnl\|bosTau2\|chr23 (20551142-20551409)
	120-387, gnl\|Hg17\|chr6 (31432710-31432443)
	120-387, gnl\|Mm7\|chr17 (33358731-33358998)

	415-670, gnl\|bosTau2\|chr20 (36655623-36655873)
	415-670, gnl\|Hg17\|chr6 (31347071-31346829)
	415-670, gnl\|Mm7\|chr17 (32077846-32077606)