Non-Coding RNA Search

Ss1.1-Liv1-LVR010068D05.5

Sequence:


               
               GCTGCCAGCCCGGGCAGAGGCCCTGCGGGCGGGCGGGCGGGAGGCGGCGCGCGCACCTGG
CGGCAGGGGACCCGCAGGCAGACAAAGCCATGCCCTGGAAGCTGACAGCCCTTCTGCTCT
TTCTGGCCGGGGTGGTCTCCGTGTGCCGTGCCCGGGCCAGGACGGACCTGCTCAACGTCT
GCATGGATGCCAAGCACCACAAGGTAGAGCCAGGCCCTGAGGACGAGCTGCACGACCAGT
GCGTCCCCTGGAAGAAGAACGCCTGCTGCTCCGCCAGAGTCAGCCACGAGCTGCACCGGG
ACAAGTCCTCCCTGTATAACTTTTCCTGGGAGCACTGCGGCAGGATGGAGCCGGCCTGCA
AGCGCCACTTCATTCAGAACAACTGTCTGTACGAGTGCTCGCCCAACCTGGGGCCCTGGT
TCCAGGAGGTGAACCAGAAGTGGCGCAAAGAGCGGTTCCTGAACGTGCCCCTCTGCAAAG
AGGACTGTCTGGACTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAGCTGGC
ACAAGGGCTGGAACTGGAGCTCAGGATCTAACCAGTGTCCCACGGGGACCACCTGCGACA
CATTTGAGTCCTTCTTCCCCACACCCGCAGCGCTGTGTGAGGGCATCTGGAATCACGATT
ATAAGTTCACCAACTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTTGACGCGG
CCGAGGGCAACCCCAACGAGGAGGTAGCGAGGTTCTACGCCTTGGCCTTGAGTGCGGGGA
CCATGTCCCTTGGGACCGGGCCTCTCCTGCTCAGCGCAGCCCTGATGCTGCCACTTGGGC
TCCTTGACTGAGTCCGGCCGTCTCCAGACGGTCCTTCTGCCTGTCCCCAGCTTTGATGAC
CAGGCTGGTCTCAACTCAGCTCCCACCAATGAGGGAGCCCTAAGCCCGCCTCATCTGTTA
CCCATCCCTCTGTCATCAAGTTCCTGCCGTAGGGTGGGCCTTGGGGTCTCTCTGACAGCC
AGTTCTAACAGGCAGATCAACAGCACTGTGTCTGATGGGCTGTTTTGGTTGTGAGCTGGT
GTGTGGCAGAGGACAGAGCCCATAGCTTTTGGATTCCTTCAGCTTAGAGAAATGAGACCT
GGGTTTGAATCCCAGCTCTGCCACTCACTATGTCAAGTGAAGCAGTTGCGCGACGGCTCT
AAACCATAGGCTCCTCCTCAATAAAATGAAGATAGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCAGCCCGGGCAGAGGCCCTGCGGGCGGGCGGGCGGGAGGCGGCGCGCGCACCTGG
CGGCAGGGGACCCGCAGGCAGACAAAGCCATGCCCTGGAAGCTGACAGCCCTTCTGCTCT
TTCTGGCCGGGGTGGTCTCCGTGTGCCGTGCCCGGGCCAGGACGGACCTGCTCAACGTCT
GCATGGATGCCAAGCACCACAAGGTAGAGCCAGGCCCTGAGGACGAGCTGCACGACCAGT
GCGTCCCCTGGAAGAAGAACGCCTGCTGCTCCGCCAGAGTCAGCCACGAGCTGCACCGGG
ACAAGTCCTCCCTGTATAACTTTTCCTGGGAGCACTGCGGCAGGATGGAGCCGGCCTGCA
AGCGCCACTTCATTCAGAACAACTGTCTGTACGAGTGCTCGCCCAACCTGGGGCCCTGGT
TCCAGGAGGTGAACCAGAAGTGGCGCAAAGAGCGGTTCCTGAACGTGCCCCTCTGCAAAG
AGGACTGTCTGGACTGGTGGGAAGACTGCCGCACCTCCTACACCTGCAAGAGCAGCTGGC
ACAAGGGCTGGAACTGGAGCTCAGGATCTAACCAGTGTCCCACGGGGACCACCTGCGACA
CATTTGAGTCCTTCTTCCCCACACCCGCAGCGCTGTGTGAGGGCATCTGGAATCACGATT
ATAAGTTCACCAACTACAGCCGGGGCAGCGGCCGCTGCATCCAGATGTGGTTTGACGCGG
CCGAGGGCAACCCCAACGAGGAGGTAGCGAGGTTCTACGCCTTGGCCTTGAGTGCGGGGA
CCATGTCCCTTGGGACCGGGCCTCTCCTGCTCAGCGCAGCCCTGATGCTGCCACTTGGGC
TCCTTGACTGAGTCCGGCCGTCTCCAGACGGTCCTTCTGCCTGTCCCCAGCTTTGATGAC
CAGGCTGGTCTCAACTCAGCTCCCACCAATGAGGGAGCCCTAAGCCCGCCTCATCTGTTA
CCCATCCCTCTGTCATCAAGTTCCTGCCGTAGGGTGGGCCTTGGGGTCTCTCTGACAGCC
AGTTCTAACAGGCAGATCAACAGCACTGTGTCTGATGGGCTGTTTTGGTTGTGAGCTGGT
GTGTGGCAGAGGACAGAGCCCATAGCTTTTGGATTCCTTCAGCTTAGAGAAATGAGACCT
GGGTTTGAATCCCAGCTCTGCCACTCACTATGTCAAGTGAAGCAGTTGCGCGACGGCTCT
AAACCATAGGCTCCTCCTCAATAAAATGAAGATAGCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               P79388_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               P79388_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-429, gnl|bosTau2|chr13 (21284158-21284507)
               

               
               79-429, gnl|Hg17|chr11 (71580855-71584152)
               

               
               79-429, gnl|Mm7|chr7 (97890073-97887057)
               


               
               562-923, gnl|bosTau2|chr15 (29894044-29893676)
               


               
               1051-1234, gnl|bosTau2|chr10 (25797689-25797505)
               

               
               1051-1234, gnl|Hg17|chr11 (71610645-71610826)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-429, gnl|bosTau2|chr13 (21284158-21284507)
               

               
               79-429, gnl|Hg17|chr11 (71580855-71584152)
               

               
               79-429, gnl|Mm7|chr7 (97890073-97887057)
               


               
               562-923, gnl|bosTau2|chr15 (29894044-29893676)
               


               
               1051-1234, gnl|bosTau2|chr10 (25797689-25797505)
               

               
               1051-1234, gnl|Hg17|chr11 (71610645-71610826)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cli (1.06968)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	79-429, gnl\|bosTau2\|chr13 (21284158-21284507)
	79-429, gnl\|Hg17\|chr11 (71580855-71584152)
	79-429, gnl\|Mm7\|chr7 (97890073-97887057)

	562-923, gnl\|bosTau2\|chr15 (29894044-29893676)

	1051-1234, gnl\|bosTau2\|chr10 (25797689-25797505)
	1051-1234, gnl\|Hg17\|chr11 (71610645-71610826)

	cli (1.06968)
	cga (0.279096)
	col (0.195008)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	lnt (0.142308)
	pla (0.133672)
	ese (0.126502)
	jca (0.11396)
	cty (0.10408)