Non-Coding RNA Search

Ss1.1-Liv1-LVR010068D12.5

Sequence:


               
               TGCATGACTTGAGGCTTGCTCATGCCATCGGTCTTGTGGCCATCCATTTGTCTCAGCCGG
CACACCCTCAGCACACTGAGAGGGGTTAATGATTATTGTATCGTTACTAAAAACGGAGCT
CCCAGTCCAGCAGTAACGACAGCTGAAACGCTCCCACGAGGCGCAAAGAACTCAGCATCA
TGACAGAAGAGGAGGTGCGGTTTGAAGGGATATTTTTTCCTAAACAGATTCTCTCGCCTG
AAATGCTGCAAGAGGTGAGGGAGGAATTTACATTTAAAGAGGAAGATGTTTTAATACTGA
CTTTTCCCAAATCAGGAACCAACTGGATGATTGAAATCATCTGCCTGATTCTCTCCAAGG
GGGATACCAAGTGGATCCAGTCTGTACCCAACTGGGATCGCTCGCCCTGGCTAGAGAGTA
TCTCTGGGTATGAAAATCTCAAGAACAAGGAAGGCCCACGCCTCATCAGTTCCCACCTCC
CCATCCAACTCTTCCCCAAGGCTTTCTTCAAGTCCAAGGCCAAGATGATTTACATCATCA
GAAATCCCAGAGATATTATTGTGTCTGGTTATTTTTTCTGGAAGTCTACAAATTTAGTTA
AGAGACCAGAGTCACTGGAACAATATTTTGAATGGTTCATCCAAGGAAATGTGCCCTATG
GATCATGGTTTGACCACATTCGTGGCTGGTTGCCCATGCGAGACAAGGAGAACGTCCTGA
TACTCAGCTATGAAGAGCTGAAACGGGACACGAGAAGCGCCGTAGAGAAAATCTGCCAGT
TCCTGGGGAAGAAGCTAGAACCCGAGGAACTGAGCTCGGTCGTCGAAAACAGCTCCTTCC
AGGTCATGAAAGAAAACAACATGTCCAATTTTTCCCTCCTGAAGGGTTTGCATCTTGGGG
ACACTGGATGTCTTTTGAGAAAAGGCACTCCTGGGGACTGGAAAAACTACTTCACGGTGG
CCCAAGCCGAAGCCTTTGATAAACTATTCCAGGAGAAGATGGCAGATCTTCCTCAAGAGC
TGTTCCCATGGCAATAATGTTCACAAACTTCCCAATCCTCTATGGATATTGATATTCGCT
CACCTGTCCTTGCACATGTGAATGATGGGGGCTAATTACACAAAAACCTCTTGTTTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATGACTTGAGGCTTGCTCATGCCATCGGTCTTGTGGCCATCCATTTGTCTCAGCCGG
CACACCCTCAGCACACTGAGAGGGGTTAATGATTATTGTATCGTTACTAAAAACGGAGCT
CCCAGTCCAGCAGTAACGACAGCTGAAACGCTCCCACGAGGCGCAAAGAACTCAGCATCA
TGACAGAAGAGGAGGTGCGGTTTGAAGGGATATTTTTTCCTAAACAGATTCTCTCGCCTG
AAATGCTGCAAGAGGTGAGGGAGGAATTTACATTTAAAGAGGAAGATGTTTTAATACTGA
CTTTTCCCAAATCAGGAACCAACTGGATGATTGAAATCATCTGCCTGATTCTCTCCAAGG
GGGATACCAAGTGGATCCAGTCTGTACCCAACTGGGATCGCTCGCCCTGGCTAGAGAGTA
TCTCTGGGTATGAAAATCTCAAGAACAAGGAAGGCCCACGCCTCATCAGTTCCCACCTCC
CCATCCAACTCTTCCCCAAGGCTTTCTTCAAGTCCAAGGCCAAGATGATTTACATCATCA
GAAATCCCAGAGATATTATTGTGTCTGGTTATTTTTTCTGGAAGTCTACAAATTTAGTTA
AGAGACCAGAGTCACTGGAACAATATTTTGAATGGTTCATCCAAGGAAATGTGCCCTATG
GATCATGGTTTGACCACATTCGTGGCTGGTTGCCCATGCGAGACAAGGAGAACGTCCTGA
TACTCAGCTATGAAGAGCTGAAACGGGACACGAGAAGCGCCGTAGAGAAAATCTGCCAGT
TCCTGGGGAAGAAGCTAGAACCCGAGGAACTGAGCTCGGTCGTCGAAAACAGCTCCTTCC
AGGTCATGAAAGAAAACAACATGTCCAATTTTTCCCTCCTGAAGGGTTTGCATCTTGGGG
ACACTGGATGTCTTTTGAGAAAAGGCACTCCTGGGGACTGGAAAAACTACTTCACGGTGG
CCCAAGCCGAAGCCTTTGATAAACTATTCCAGGAGAAGATGGCAGATCTTCCTCAAGAGC
TGTTCCCATGGCAATAATGTTCACAAACTTCCCAATCCTCTATGGATATTGATATTCGCT
CACCTGTCCTTGCACATGTGAATGATGGGGGCTAATTACACAAAAACCTCTTGTTTCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1711592|sp|P52842|ST2A1_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1711592|sp|P52842|ST2A1_MACFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               314-453, + strand, RNAz p=0.995154
               

               
               746-925, - strand, RNAz p=0.862737

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-453, + strand, RNAz p=0.995154
               

               
               746-925, - strand, RNAz p=0.862737

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               314-534, gnl|bosTau2|chr18 (47722119-47721898)
               

               
               314-534, gnl|canFam2|chr1 (104710558-104710360)
               

               
               314-534, gnl|dasNov1|scaffold_243748 (179-398)
               

               
               314-534, gnl|echTel1|scaffold_271782 (1939-2148)
               

               
               314-534, gnl|Hg17|chr19 (53078856-53078635)
               

               
               314-534, gnl|hg17|chr3 (134058214-134058454)
               

               
               314-534, gnl|loxAfr1|scaffold_162534 (1456-1246)
               

               
               314-534, gnl|mm7|chr7 (12449338-12449128)
               

               
               314-534, gnl|Mm7|chr7_random (6334654-6334875)
               

               
               314-534, gnl|panTro1|chr2 (136197240-136197480)
               

               
               314-534, gnl|rheMac2|chr2 (154837454-154837214)
               

               
               314-534, gnl|rn3|chr1 (75784930-75784720)
               


               
               746-925, gnl|bosTau2|chr18 (47715349-47715170)
               

               
               746-925, gnl|Hg17|chr19 (53069904-53069725)
               

               
               746-925, gnl|Mm7|chr7 (13026970-13026800)
               


               
               931-1140, gnl|bosTau2|chr18 (47713582-47713374)
               

               
               931-1140, gnl|Hg17|chr19 (53066630-53066423)
               

               
               931-1140, gnl|Mm7|chr7 (13024985-13024783)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               314-534, gnl|bosTau2|chr18 (47722119-47721898)
               

               
               314-534, gnl|canFam2|chr1 (104710558-104710360)
               

               
               314-534, gnl|dasNov1|scaffold_243748 (179-398)
               

               
               314-534, gnl|echTel1|scaffold_271782 (1939-2148)
               

               
               314-534, gnl|Hg17|chr19 (53078856-53078635)
               

               
               314-534, gnl|hg17|chr3 (134058214-134058454)
               

               
               314-534, gnl|loxAfr1|scaffold_162534 (1456-1246)
               

               
               314-534, gnl|mm7|chr7 (12449338-12449128)
               

               
               314-534, gnl|Mm7|chr7_random (6334654-6334875)
               

               
               314-534, gnl|panTro1|chr2 (136197240-136197480)
               

               
               314-534, gnl|rheMac2|chr2 (154837454-154837214)
               

               
               314-534, gnl|rn3|chr1 (75784930-75784720)
               


               
               746-925, gnl|bosTau2|chr18 (47715349-47715170)
               

               
               746-925, gnl|Hg17|chr19 (53069904-53069725)
               

               
               746-925, gnl|Mm7|chr7 (13026970-13026800)
               


               
               931-1140, gnl|bosTau2|chr18 (47713582-47713374)
               

               
               931-1140, gnl|Hg17|chr19 (53066630-53066423)
               

               
               931-1140, gnl|Mm7|chr7 (13024985-13024783)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               lun (1.3544)
               

               
               cli (0.611247)
               

               
               cte (0.29274)
               

               
               ute (0.265569)
               

               
               cut (0.169924)
               

               
               fco (0.157208)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.3544)
               

               
               cli (0.611247)
               

               
               cte (0.29274)
               

               
               ute (0.265569)
               

               
               cut (0.169924)
               

               
               fco (0.157208)

	314-453, + strand, RNAz p=0.995154
	746-925, - strand, RNAz p=0.862737

	314-534, gnl\|bosTau2\|chr18 (47722119-47721898)
	314-534, gnl\|canFam2\|chr1 (104710558-104710360)
	314-534, gnl\|dasNov1\|scaffold_243748 (179-398)
	314-534, gnl\|echTel1\|scaffold_271782 (1939-2148)
	314-534, gnl\|Hg17\|chr19 (53078856-53078635)
	314-534, gnl\|hg17\|chr3 (134058214-134058454)
	314-534, gnl\|loxAfr1\|scaffold_162534 (1456-1246)
	314-534, gnl\|mm7\|chr7 (12449338-12449128)
	314-534, gnl\|Mm7\|chr7_random (6334654-6334875)
	314-534, gnl\|panTro1\|chr2 (136197240-136197480)
	314-534, gnl\|rheMac2\|chr2 (154837454-154837214)
	314-534, gnl\|rn3\|chr1 (75784930-75784720)

	746-925, gnl\|bosTau2\|chr18 (47715349-47715170)
	746-925, gnl\|Hg17\|chr19 (53069904-53069725)
	746-925, gnl\|Mm7\|chr7 (13026970-13026800)

	931-1140, gnl\|bosTau2\|chr18 (47713582-47713374)
	931-1140, gnl\|Hg17\|chr19 (53066630-53066423)
	931-1140, gnl\|Mm7\|chr7 (13024985-13024783)

	lun (1.3544)
	cli (0.611247)
	cte (0.29274)
	ute (0.265569)
	cut (0.169924)
	fco (0.157208)