Ss1.1-Liv1-LVR010068G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACACAAGAGAAGCTGCTGTCGCCAGTGTCGGAGCCGCCACCGCTGCCACCGCCTCTTG GAATCGCAGGATACTCCGCTTCGCCGCCGCCCAGCCTGCCGCGACATGCCGTCCGAGAAA ACCTTCAAACAGCGCCGAACCTTCGAACAGAGAGTAGAAGATGTCCGGCTCATCCGAGAG CAGCATCCTACCAAAATCCCGGTAATAATAGAACGATACAAAGGTGAGAAGCAGCTTCCA GTCCTGGATAAAACGAAATTCCTGGTGCCTGATCATGTCAACATGAGTGAGCTCATCAAG ATAATTAGAAGGCGCTTGCAGCTCAATGCTAACCAAGCCTTCTTCCTGTTAGTGAACGGA CATAGCATGGTGAGTGTGTCCACACCGATTTGTGAGGTGTACGAAAGCGAGAAGGATGAA GATGGATTCCTGTACATGGTATATGCCTCTCAGGAGACTTTCGGAATGAAGTTGTCTGTG TAAGACTAGAAAAATGTATCTGTGCTAGAATTTTTTAAACCCTTACCAAGGAATAAAAAA GGGATGTTACCAACTGAGATTTATCAGCTCATCTAATCACAGATCATCCAAACAGTAGTT TTCCTGCCTAGGAGTCTTAGGAAGTTGTTTTTGTACTTCACGCAGAAAAACGGAGCTCCG GACGAGCACATTCAGCTTTGGAAAACTTTATTACTTAACCTAGGCTGTTTTGTTTTCACA TACAGAAGTTTAAAAAATAAAATACTTTGCATTCTAAGTTGCCAGTAAAATAGATTTTCA AGTTATTTTTAATGCTCTTTTCCCAAAAGGAACTTAGAATTTGAGCATTCAGAGGGACAG TTAAGTCTTGTCTCTAGGTTCATAGAACCTGCCAACTTTTTATGGAAGGGTTTCTACTCA AGTAGAGAAATCTTAAGAGGATCTTTCAGCGTTAAGTTGTCAGGCATGGCCACGTCCATC CCAGTGTATCTGCCATAATAGTTGGAAAAAGGGTGAATTGGGGGTACACAGGAAACTATA AGCCTGAGCTGCTGTGCAGGGTTCCTGATCTGCTAATAAGTGTATTCCAGGTCAGCACTC ATGAGGAAGTTCTCATTTGGTTACTTCTCTAGACAGTACATGCAAAAAGACCACTGCTCA ACAGGAACCTTGGATAATTGATGATTTTGGTCAAGTTTCTCCAAAGGCCTAGAGAAAGAA TGGCGTTTCTTCCGTTTTGGACATTCTCTGCAGAGTCAAGATACTGCCTGCTTTGGTCAA CGCCAGGCAGTCACATCACTTTCATTCTTTAGGACAGGGTGGGAAACCACAGGATTCAGA TGTCACTTCCTCTACCTTCTGGCTGAAACTGTAGATGATCCATGTTTTATGTTAAGTGTG TGACTAAAATACGTAATTAGACACTTTTAATTTAAGAGTATCTCAGTTACCACTGTTAGG TCAAGCAACCCTCAGTTTCCCCATTCTATGTGCATGTCACTTTGGAAAATAGCAAAAGGA AAAAATGTTCTTTTACAGCTATTAATGGCAAAAGTTAAACATGTTCAAAAGTCCAGCTAG AATAAATAACCAGTGCTTCCTGTTACCTGCATGGGGTTCCCCATGGACTATTTTTTGTGG GCGTTATCACAGAAAGGGCCCAGACCCACTTGCTTGACGTACATTGTAGCAGGCCGCGTT TCCTCTTGCGCATCTAGATGTGTGGAACACTCGTATCTGTCAGCGGCAGGTATTGACTCT TCAACGCGGTGTTGTGCTGCACCCGGGCCCTCGACCCCCCATCTTCCCGCTGCATGCATC TGTCCACGTGGCTGACTTTTCACGTGTATATTTCTACATTGTGCAAATTCTTAGTCACCC TGTCTCGCTTAGATTGTACGCATCATTACATCTGACGTTCTTGTAACCACGGCGTGCTCC GTAAGATTCCTATGAGAAGTTCTGCTTTTTAAAGACAAAGATACCATGCCGAGAGGGGAG ACTTAGACCCCACGTTAGTGGGTGGTCACTCCCTTTATAGGATCTTTAAAACAAGTACAT TTTTAATGACTAAGGTAAAATAAAGGCACAACTAAAAACTGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACACAAGAGAAGCTGCTGTCGCCAGTGTCGGAGCCGCCACCGCTGCCACCGCCTCTTG GAATCGCAGGATACTCCGCTTCGCCGCCGCCCAGCCTGCCGCGACATGCCGTCCGAGAAA ACCTTCAAACAGCGCCGAACCTTCGAACAGAGAGTAGAAGATGTCCGGCTCATCCGAGAG CAGCATCCTACCAAAATCCCGGTAATAATAGAACGATACAAAGGTGAGAAGCAGCTTCCA GTCCTGGATAAAACGAAATTCCTGGTGCCTGATCATGTCAACATGAGTGAGCTCATCAAG ATAATTAGAAGGCGCTTGCAGCTCAATGCTAACCAAGCCTTCTTCCTGTTAGTGAACGGA CATAGCATGGTGAGTGTGTCCACACCGATTTGTGAGGTGTACGAAAGCGAGAAGGATGAA GATGGATTCCTGTACATGGTATATGCCTCTCAGGAGACTTTCGGAATGAAGTTGTCTGTG TAAGACTAGAAAAATGTATCTGTGCTAGAATTTTTTAAACCCTTACCAAGGAATAAAAAA GGGATGTTACCAACTGAGATTTATCAGCTCATCTAATCACAGATCATCCAAACAGTAGTT TTCCTGCCTAGGAGTCTTAGGAAGTTGTTTTTGTACTTCACGCAGAAAAACGGAGCTCCG GACGAGCACATTCAGCTTTGGAAAACTTTATTACTTAACCTAGGCTGTTTTGTTTTCACA TACAGAAGTTTAAAAAATAAAATACTTTGCATTCTAAGTTGCCAGTAAAATAGATTTTCA AGTTATTTTTAATGCTCTTTTCCCAAAAGGAACTTAGAATTTGAGCATTCAGAGGGACAG TTAAGTCTTGTCTCTAGGTTCATAGAACCTGCCAACTTTTTATGGAAGGGTTTCTACTCA AGTAGAGAAATCTTAAGAGGATCTTTCAGCGTTAAGTTGTCAGGCATGGCCACGTCCATC CCAGTGTATCTGCCATAATAGTTGGAAAAAGGGTGAATTGGGGGTACACAGGAAACTATA AGCCTGAGCTGCTGTGCAGGGTTCCTGATCTGCTAATAAGTGTATTCCAGGTCAGCACTC ATGAGGAAGTTCTCATTTGGTTACTTCTCTAGACAGTACATGCAAAAAGACCACTGCTCA ACAGGAACCTTGGATAATTGATGATTTTGGTCAAGTTTCTCCAAAGGCCTAGAGAAAGAA TGGCGTTTCTTCCGTTTTGGACATTCTCTGCAGAGTCAAGATACTGCCTGCTTTGGTCAA CGCCAGGCAGTCACATCACTTTCATTCTTTAGGACAGGGTGGGAAACCACAGGATTCAGA TGTCACTTCCTCTACCTTCTGGCTGAAACTGTAGATGATCCATGTTTTATGTTAAGTGTG TGACTAAAATACGTAATTAGACACTTTTAATTTAAGAGTATCTCAGTTACCACTGTTAGG TCAAGCAACCCTCAGTTTCCCCATTCTATGTGCATGTCACTTTGGAAAATAGCAAAAGGA AAAAATGTTCTTTTACAGCTATTAATGGCAAAAGTTAAACATGTTCAAAAGTCCAGCTAG AATAAATAACCAGTGCTTCCTGTTACCTGCATGGGGTTCCCCATGGACTATTTTTTGTGG GCGTTATCACAGAAAGGGCCCAGACCCACTTGCTTGACGTACATTGTAGCAGGCCGCGTT TCCTCTTGCGCATCTAGATGTGTGGAACACTCGTATCTGTCAGCGGCAGGTATTGACTCT TCAACGCGGTGTTGTGCTGCACCCGGGCCCTCGACCCCCCATCTTCCCGCTGCATGCATC TGTCCACGTGGCTGACTTTTCACGTGTATATTTCTACATTGTGCAAATTCTTAGTCACCC TGTCTCGCTTAGATTGTACGCATCATTACATCTGACGTTCTTGTAACCACGGCGTGCTCC GTAAGATTCCTATGAGAAGTTCTGCTTTTTAAAGACAAAGATACCATGCCGAGAGGGGAG ACTTAGACCCCACGTTAGTGGGTGGTCACTCCCTTTATAGGATCTTTAAAACAAGTACAT TTTTAATGACTAAGGTAAAATAAAGGCACAACTAAAAACTGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 181-1015, gnl|bosTau2|chr24 (35307863-35307011) | |
| 181-1015, gnl|Hg17|chr18 (50772656-50773845) | |
| 201-308, gnl|bosTau2|chr18 (13512355-13512462) | |
| 201-308, gnl|canFam2|chr5 (68672334-68672218) | |
| 201-308, gnl|danRer3|chrNA (55914501-55914387) | |
| 201-308, gnl|dasNov1|scaffold_35342 (5118-5234) | |
| 201-308, gnl|echTel1|scaffold_218621 (6861-6972) | |
| 201-308, gnl|fr1|chrUn (276916443-276916329) | |
| 201-308, gnl|galGal2|chr11 (18147904-18148020) | |
| 201-308, gnl|hg17|chr16 (85993278-85993394) | |
| 201-308, gnl|Hg17|chr16 (85993281-85993388) | |
| 201-308, gnl|loxAfr1|scaffold_20867 (8869-8761) | |
| 201-308, gnl|Mm7|chr14 (43408320-43408216) | |
| 201-308, gnl|mm7|chr8 (120238380-120238496) | |
| 201-308, gnl|monDom2|scaffold_23 (11204294-11204178) | |
| 201-308, gnl|oryCun1|scaffold_4207 (1482-1373) | |
| 201-308, gnl|panTro1|chr18 (80949925-80950041) | |
| 201-308, gnl|rheMac2|chr20 (85524739-85524855) | |
| 201-308, gnl|rn3|chr19 (51857579-51857695) | |
| 201-308, gnl|tetNig1|chrUn_random (84758883-84758769) | |
| 201-308, gnl|xenTro1|scaffold_672 (272043-271931) | |
| 313-464, gnl|bosTau2|chr13 (47362537-47362386) | |
| 313-464, gnl|Hg17|chr20 (32611205-32611356) | |
| 313-464, gnl|Mm7|chr2 (155018337-155018488) | |
| 1331-2073, gnl|bosTau2|chr18 (16338811-16338069) | |
| 1331-2073, gnl|Hg17|chr9 (19450032-19449239) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-1015, gnl|bosTau2|chr24 (35307863-35307011) | |
| 181-1015, gnl|Hg17|chr18 (50772656-50773845) | |
| 201-308, gnl|bosTau2|chr18 (13512355-13512462) | |
| 201-308, gnl|canFam2|chr5 (68672334-68672218) | |
| 201-308, gnl|danRer3|chrNA (55914501-55914387) | |
| 201-308, gnl|dasNov1|scaffold_35342 (5118-5234) | |
| 201-308, gnl|echTel1|scaffold_218621 (6861-6972) | |
| 201-308, gnl|fr1|chrUn (276916443-276916329) | |
| 201-308, gnl|galGal2|chr11 (18147904-18148020) | |
| 201-308, gnl|hg17|chr16 (85993278-85993394) | |
| 201-308, gnl|Hg17|chr16 (85993281-85993388) | |
| 201-308, gnl|loxAfr1|scaffold_20867 (8869-8761) | |
| 201-308, gnl|Mm7|chr14 (43408320-43408216) | |
| 201-308, gnl|mm7|chr8 (120238380-120238496) | |
| 201-308, gnl|monDom2|scaffold_23 (11204294-11204178) | |
| 201-308, gnl|oryCun1|scaffold_4207 (1482-1373) | |
| 201-308, gnl|panTro1|chr18 (80949925-80950041) | |
| 201-308, gnl|rheMac2|chr20 (85524739-85524855) | |
| 201-308, gnl|rn3|chr19 (51857579-51857695) | |
| 201-308, gnl|tetNig1|chrUn_random (84758883-84758769) | |
| 201-308, gnl|xenTro1|scaffold_672 (272043-271931) | |
| 313-464, gnl|bosTau2|chr13 (47362537-47362386) | |
| 313-464, gnl|Hg17|chr20 (32611205-32611356) | |
| 313-464, gnl|Mm7|chr2 (155018337-155018488) | |
| 1331-2073, gnl|bosTau2|chr18 (16338811-16338069) | |
| 1331-2073, gnl|Hg17|chr9 (19450032-19449239) |
| Expressed library(ies): 56 entry(ies) | More info |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
| fhi (1.01747) | |
| bla (0.621736) | |
| hea (0.613497) | |
| sme (0.610874) | |
| ski (0.586941) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| spc (0.453463) | |
| isp (0.451128) | |
| lnt (0.426925) | |
| mas (0.42061) | |
| ldo (0.38801) | |
| sug (0.381874) | |
| gul (0.355177) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cty (0.31224) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| pty (0.285429) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (1.01747) | |
| bla (0.621736) | |
| hea (0.613497) | |
| sme (0.610874) | |
| ski (0.586941) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| spc (0.453463) | |
| isp (0.451128) | |
| lnt (0.426925) | |
| mas (0.42061) | |
| ldo (0.38801) | |
| sug (0.381874) | |
| gul (0.355177) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cty (0.31224) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| pty (0.285429) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| ese (0.253004) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) |