Non-Coding RNA Search

Ss1.1-Liv1-LVR010068G12.5

Sequence:


               
               AAAAAAAAAAAGCATTGCGGGCAGGTGGTGGCTCTGGGTCCACTCAGCGCATCCCGCTCT
GCGAGGCAGACATGAGGGCGGAGGGCATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGG
CTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGACTGTGA
CCCTGAAGGGCCAGATCACGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACA
CCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGTTTCTTTAGACCCCAATAAGAACGTCA
TCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCT
CCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAG
AAATCCACCAGGGCTTCCAGCACCTCCTGCGGGCCCTCAGCCAACCCAGCAACCTGCTGC
AGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCGGCTGAAGCTGCTGGACAAGTTCG
TCCAAGATGCCCGTGAGCTGTACTTCTCCGAGGTCTTCTCCATCAGCTTTAAGGACTCCG
ATGCTGCCGTAGAGTTCATCAACAACTATGTGAAGAATAAGACCAAGGGGAAAATTGTGG
ATTTGTTCAAACAACTTTCCCCGGATACCGTCCTGGTTCTGGTGAACTGCATCTACTTTA
AAGCCAAGTGGAAGACGCCCTTTGATCCCAGCTTTACCACGGAGGCAGATTTCCACGTGA
GCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTTCGGGCCGGACCCTGCCTTACT
TCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCG
CGCTCTTCATCCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCCAGCTGCTCCCGG
AGACGCTGAGGAGGTGGAGAGACTCCCTGCACCAGAGACGGATAACTGCCCTCCACCTGC
CACGGTTTTCCGTCTCCGGGGACTATACGCTGCATGACATCCTTCCCCACCTGGGCATTA
AGAAAGTCTTCAGCCACCAGGCTGACCTGTCAGGAATCACAGATCAAGCACGCCTGAAAG
TTTCCCAGGTGGTCCACAGAGCTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTG
CTGCCACGGGAATCAGCATAGAACTCACATCCATAGAGTTTTTGACGGTGCATTTCAACA
GGCCCTTTCTCTTTTCCATAATTCACAAAGACACCCAGAGCATCATCTTTTCAGGCAAAG
TCACCGACCCCAGTCAAGCCTAGAGCTCCCCTCCAAGTGCCAGGTCTCCTCATTAAGGAG
CTGGGTGCCCTGGTCCCTGGGGCAGCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACA
GTCGCCCTCTGGAGGCTCCACATGCCCAGGGAGCCTGCGCCCTGCTCCGCGGAGGCTCTG
AGACCTCGCACAGCAATAAAGCATCTTTCTGAGCTGGAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAGCATTGCGGGCAGGTGGTGGCTCTGGGTCCACTCAGCGCATCCCGCTCT
GCGAGGCAGACATGAGGGCGGAGGGCATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGG
CTGGGCTCTGCTCCAGGGTCCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGACTGTGA
CCCTGAAGGGCCAGATCACGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACA
CCGACTTCGCCTTCAGCCTCTACAAGCAGCTGGTTTCTTTAGACCCCAATAAGAACGTCA
TCTTCTCCCCGCTGAGCGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCT
CCACCCTGACAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAG
AAATCCACCAGGGCTTCCAGCACCTCCTGCGGGCCCTCAGCCAACCCAGCAACCTGCTGC
AGCTGAACGTGGGCAACGCCATGTTCGTGGATGAGCGGCTGAAGCTGCTGGACAAGTTCG
TCCAAGATGCCCGTGAGCTGTACTTCTCCGAGGTCTTCTCCATCAGCTTTAAGGACTCCG
ATGCTGCCGTAGAGTTCATCAACAACTATGTGAAGAATAAGACCAAGGGGAAAATTGTGG
ATTTGTTCAAACAACTTTCCCCGGATACCGTCCTGGTTCTGGTGAACTGCATCTACTTTA
AAGCCAAGTGGAAGACGCCCTTTGATCCCAGCTTTACCACGGAGGCAGATTTCCACGTGA
GCAAGAACAGGACGGTGAGGGTGCCCATGATGGGCATTTCGGGCCGGACCCTGCCTTACT
TCCGGGACGAGGAGCTGGCCTGCACGGTGGTGGAGCTCCCGTACACCAGCAACGACAGCG
CGCTCTTCATCCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCCAGCTGCTCCCGG
AGACGCTGAGGAGGTGGAGAGACTCCCTGCACCAGAGACGGATAACTGCCCTCCACCTGC
CACGGTTTTCCGTCTCCGGGGACTATACGCTGCATGACATCCTTCCCCACCTGGGCATTA
AGAAAGTCTTCAGCCACCAGGCTGACCTGTCAGGAATCACAGATCAAGCACGCCTGAAAG
TTTCCCAGGTGGTCCACAGAGCTGTGCTTGACGTGGACGAGGAGGGCACGGAAGGAGCTG
CTGCCACGGGAATCAGCATAGAACTCACATCCATAGAGTTTTTGACGGTGCATTTCAACA
GGCCCTTTCTCTTTTCCATAATTCACAAAGACACCCAGAGCATCATCTTTTCAGGCAAAG
TCACCGACCCCAGTCAAGCCTAGAGCTCCCCTCCAAGTGCCAGGTCTCCTCATTAAGGAG
CTGGGTGCCCTGGTCCCTGGGGCAGCCTGGCACTGCCTGCTCACCCTTGGGAAGGTGACA
GTCGCCCTCTGGAGGCTCCACATGCCCAGGGAGCCTGCGCCCTGCTCCGCGGAGGCTCTG
AGACCTCGCACAGCAATAAAGCATCTTTCTGAGCTGGAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523270|ref|NP_998952.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523270|ref|NP_998952.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               56-723, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               56-723, gnl|Hg17|chr14 (94150510-94151174)
               

               
               56-723, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1146-1409, gnl|bosTau2|chr21 (40633161-40632894)
               

               
               1146-1409, gnl|Hg17|chr14 (94159698-94159983)
               

               
               1146-1409, gnl|Mm7|chr12 (101907731-101908008)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-723, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               56-723, gnl|Hg17|chr14 (94150510-94151174)
               

               
               56-723, gnl|Mm7|chr12 (101902962-101903629)
               


               
               1146-1409, gnl|bosTau2|chr21 (40633161-40632894)
               

               
               1146-1409, gnl|Hg17|chr14 (94159698-94159983)
               

               
               1146-1409, gnl|Mm7|chr12 (101907731-101908008)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (6.11247)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (6.11247)
               

               
               lun (0.150489)

	56-723, gnl\|bosTau2\|chr21 (40705409-40704769)
	56-723, gnl\|Hg17\|chr14 (94150510-94151174)
	56-723, gnl\|Mm7\|chr12 (101902962-101903629)

	1146-1409, gnl\|bosTau2\|chr21 (40633161-40632894)
	1146-1409, gnl\|Hg17\|chr14 (94159698-94159983)
	1146-1409, gnl\|Mm7\|chr12 (101907731-101908008)