Ss1.1-Liv1-LVR010071B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGCCGAGGCGGTGCTGGGAGCAGAGTCCGGTTCCCTCGTGCAGACTGCGCGCGTCTC CTTTTCCTCTGTATCTGCGCCAGGCGTGCTGTCCATCGCCCAGCCTCCGGTCCCCGGTGT GCCCGGCCACCCACGCTCCCAGGATGTGGTCCAGCCTGAACGAGTGGCTATGGCAAGAAA GGTTCTGGCTACCACCCAACAACTCATGGACTGAACTGGAGGACCGGGATGGCCTGGTCT TCGCCCACCCCCAGGACATGCTCATGGCCCTGCCCCTGGCTCTGGCCCTGGTGGCTGTGC GCTATGTCTTCGAAAAATTCGTCGGTGTGCCCTTGAGCCGGCTGCTGGGTGTGCGGAACC AGAGGAAGCAGCCAGCGAAGCCCAATGCCACTCTGGAGAAACACTTCCTTAGTGGAGGGT GGAAACCCACGGAGCCCCAGATGAGCCTCCTGGCCACTCAGTGTGGCCTTACACTGCGGC AGACGCAACGCTGGTTTCAGAGACGCCGGAACCAGGAACGGCCCTGCCTGACCAAGAAGT TCTGTGAGGCCAGCTGGAGGTTCACCTTCTATCTGTGTGCCTTCATCGGTGGAGTCTCAG TCCTGTACAATGAGTCATGGCTGTGGGCGCCGGTAATGTGCTGGGAAAGTTACCCACAGC AGCCCCTGAAGCCAGCCCTGTACCACTGGTACCTCCTGGAGCTGAGTTTCTACATCTCCC TGCTGATGACGCTGCCCTTTGACATCAAGCGCAAGGATTTCAAGGAGCAAGTGGCGCATC ACGTCGTGACCATCACTCTGATCATGTTCTCCTATAGCACGAACCTGCTGCGCATTGGTT CTCTGGTGCTGCTACTGCACGACTCCTCGGACTACCTGTTGGAGGCCTGTAAGTTGTTCA ACTATACCCACTGGCGGCGTGTGTGCGATGCTCTCTTCATCATCTTCTCCTTGGTCTTCT TCTACACTCGCCTTGTGCTCTTCCCCACCCAGATCCTCTATACCACATACTACGAGTCCA TTGCCCAGTCGGGCCCCTTCTTTGGCTACTACTTCTTCAATGCCCTTCTGATGCTGCTGC AGCTGCTGCATGTGTTCTGGTCTTGCCTCATCCTTCGCATGATCTACCACTTCATGAAGA AAGGCCAGATGGAGAAGGACATTCGCAGTGACGTGGAGGAGTCCGACTCCAGTGATGGAG AGGTGGCCCAGGAGTGCCTGCCGCTGAAGAATGGGGCAGCTCACCAGCCCGGAGCAGCCC CCACTGATGGCCCACGGATCCGGGCCACAGGGCAGTTGGCCAAGGGGCCCCCAGCAGCCA TGTAGCTGGCCGAGGACTGGCCACCAGGGGCTGCCCCAGCTCCCGGCAGTTTGGCCTGGT GGAGCTGCTGGACCAGCGGCCCTGGGGCCAACTCTGTGGAGACAGGGAGGGCCCTGCTCC TCGGGGTAGCGGGGAGAGGGCTGATGATCTGTCTCCACTCTCTTCCTTCTGCCCACCCTC CCTCTTTCCCTCAGGCAACTGGACAGCTGGGGGCAGCGGGCAGCCACAGGATGCTGCAGC CTGCCAGAGCCACCTCCAGGCTGCAGCCGGGGGACCGTGAAGAGCCCCAGGCTCAAAGGG GTCCAATAAAACTTGAACGGAGCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGCCGAGGCGGTGCTGGGAGCAGAGTCCGGTTCCCTCGTGCAGACTGCGCGCGTCTC CTTTTCCTCTGTATCTGCGCCAGGCGTGCTGTCCATCGCCCAGCCTCCGGTCCCCGGTGT GCCCGGCCACCCACGCTCCCAGGATGTGGTCCAGCCTGAACGAGTGGCTATGGCAAGAAA GGTTCTGGCTACCACCCAACAACTCATGGACTGAACTGGAGGACCGGGATGGCCTGGTCT TCGCCCACCCCCAGGACATGCTCATGGCCCTGCCCCTGGCTCTGGCCCTGGTGGCTGTGC GCTATGTCTTCGAAAAATTCGTCGGTGTGCCCTTGAGCCGGCTGCTGGGTGTGCGGAACC AGAGGAAGCAGCCAGCGAAGCCCAATGCCACTCTGGAGAAACACTTCCTTAGTGGAGGGT GGAAACCCACGGAGCCCCAGATGAGCCTCCTGGCCACTCAGTGTGGCCTTACACTGCGGC AGACGCAACGCTGGTTTCAGAGACGCCGGAACCAGGAACGGCCCTGCCTGACCAAGAAGT TCTGTGAGGCCAGCTGGAGGTTCACCTTCTATCTGTGTGCCTTCATCGGTGGAGTCTCAG TCCTGTACAATGAGTCATGGCTGTGGGCGCCGGTAATGTGCTGGGAAAGTTACCCACAGC AGCCCCTGAAGCCAGCCCTGTACCACTGGTACCTCCTGGAGCTGAGTTTCTACATCTCCC TGCTGATGACGCTGCCCTTTGACATCAAGCGCAAGGATTTCAAGGAGCAAGTGGCGCATC ACGTCGTGACCATCACTCTGATCATGTTCTCCTATAGCACGAACCTGCTGCGCATTGGTT CTCTGGTGCTGCTACTGCACGACTCCTCGGACTACCTGTTGGAGGCCTGTAAGTTGTTCA ACTATACCCACTGGCGGCGTGTGTGCGATGCTCTCTTCATCATCTTCTCCTTGGTCTTCT TCTACACTCGCCTTGTGCTCTTCCCCACCCAGATCCTCTATACCACATACTACGAGTCCA TTGCCCAGTCGGGCCCCTTCTTTGGCTACTACTTCTTCAATGCCCTTCTGATGCTGCTGC AGCTGCTGCATGTGTTCTGGTCTTGCCTCATCCTTCGCATGATCTACCACTTCATGAAGA AAGGCCAGATGGAGAAGGACATTCGCAGTGACGTGGAGGAGTCCGACTCCAGTGATGGAG AGGTGGCCCAGGAGTGCCTGCCGCTGAAGAATGGGGCAGCTCACCAGCCCGGAGCAGCCC CCACTGATGGCCCACGGATCCGGGCCACAGGGCAGTTGGCCAAGGGGCCCCCAGCAGCCA TGTAGCTGGCCGAGGACTGGCCACCAGGGGCTGCCCCAGCTCCCGGCAGTTTGGCCTGGT GGAGCTGCTGGACCAGCGGCCCTGGGGCCAACTCTGTGGAGACAGGGAGGGCCCTGCTCC TCGGGGTAGCGGGGAGAGGGCTGATGATCTGTCTCCACTCTCTTCCTTCTGCCCACCCTC CCTCTTTCCCTCAGGCAACTGGACAGCTGGGGGCAGCGGGCAGCCACAGGATGCTGCAGC CTGCCAGAGCCACCTCCAGGCTGCAGCCGGGGGACCGTGAAGAGCCCCAGGCTCAAAGGG GTCCAATAAAACTTGAACGGAGCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 433-1645, - strand, RNAz p=0.992818 | |
| 1340-1455, + strand, RNAz p=0.515006 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 433-1645, - strand, RNAz p=0.992818 | |
| 1340-1455, + strand, RNAz p=0.515006 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_024552, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 140-313, gnl|bosTau2|chr7 (11887568-11887741) | |
| 140-313, gnl|Hg17|chr19 (8221957-8222130) | |
| 140-313, gnl|Mm7|chr8 (4479284-4479457) | |
| 433-553, gnl|bosTau2|chr7 (11891522-11891642) | |
| 433-553, gnl|Hg17|chr19 (8226489-8226609) | |
| 433-553, gnl|Mm7|chr8 (4481970-4482090) | |
| 754-885, gnl|bosTau2|chr7 (11893115-11893246) | |
| 754-885, gnl|canFam2|chr20 (55859186-55859337) | |
| 754-885, gnl|danRer3|chrUn (48121336-48121487) | |
| 754-885, gnl|dasNov1|scaffold_10698 (10471-10318) | |
| 754-885, gnl|echTel1|scaffold_258523 (3735-3579) | |
| 754-885, gnl|fr1|chrUn (161439914-161440059) | |
| 754-885, gnl|hg17|chr19 (8227817-8227968) | |
| 754-885, gnl|Hg17|chr19 (8227831-8227962) | |
| 754-885, gnl|loxAfr1|scaffold_227392 (933-780) | |
| 754-885, gnl|mm7|chr8 (4484270-4484421) | |
| 754-885, gnl|Mm7|chr8 (4484284-4484415) | |
| 754-885, gnl|oryCun1|scaffold_1112 (314-164) | |
| 754-885, gnl|panTro1|chr20_random (32486712-32486863) | |
| 754-885, gnl|rheMac2|chr19 (8207623-8207774) | |
| 754-885, gnl|rn3|chr12 (1261556-1261405) | |
| 754-885, gnl|tetNig1|chr1 (11584343-11584198) | |
| 1145-1645, gnl|bosTau2|chr7 (11895702-11896199) | |
| 1145-1645, gnl|Hg17|chr19 (8232810-8233303) | |
| 1145-1645, gnl|Mm7|chr8 (4487332-4487787) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-313, gnl|bosTau2|chr7 (11887568-11887741) | |
| 140-313, gnl|Hg17|chr19 (8221957-8222130) | |
| 140-313, gnl|Mm7|chr8 (4479284-4479457) | |
| 433-553, gnl|bosTau2|chr7 (11891522-11891642) | |
| 433-553, gnl|Hg17|chr19 (8226489-8226609) | |
| 433-553, gnl|Mm7|chr8 (4481970-4482090) | |
| 754-885, gnl|bosTau2|chr7 (11893115-11893246) | |
| 754-885, gnl|canFam2|chr20 (55859186-55859337) | |
| 754-885, gnl|danRer3|chrUn (48121336-48121487) | |
| 754-885, gnl|dasNov1|scaffold_10698 (10471-10318) | |
| 754-885, gnl|echTel1|scaffold_258523 (3735-3579) | |
| 754-885, gnl|fr1|chrUn (161439914-161440059) | |
| 754-885, gnl|hg17|chr19 (8227817-8227968) | |
| 754-885, gnl|Hg17|chr19 (8227831-8227962) | |
| 754-885, gnl|loxAfr1|scaffold_227392 (933-780) | |
| 754-885, gnl|mm7|chr8 (4484270-4484421) | |
| 754-885, gnl|Mm7|chr8 (4484284-4484415) | |
| 754-885, gnl|oryCun1|scaffold_1112 (314-164) | |
| 754-885, gnl|panTro1|chr20_random (32486712-32486863) | |
| 754-885, gnl|rheMac2|chr19 (8207623-8207774) | |
| 754-885, gnl|rn3|chr12 (1261556-1261405) | |
| 754-885, gnl|tetNig1|chr1 (11584343-11584198) | |
| 1145-1645, gnl|bosTau2|chr7 (11895702-11896199) | |
| 1145-1645, gnl|Hg17|chr19 (8232810-8233303) | |
| 1145-1645, gnl|Mm7|chr8 (4487332-4487787) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| csp (0.322373) | |
| cli (0.305623) | |
| eli (0.303628) | |
| pty (0.285429) | |
| jej (0.197844) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.322373) | |
| cli (0.305623) | |
| eli (0.303628) | |
| pty (0.285429) | |
| jej (0.197844) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |