Non-Coding RNA Search

Ss1.1-Liv1-LVR010071D09.5

Sequence:


               
               AAGGCGGAAGCCAGCCTGGTTCCTGGCTTTGGGGCTGGAAATTATGGGATGAGGGCCTGG
GGCCCCACTGGAGGCACCATTTAGTGTCAGGACCCCAGGAACCAGTCCTCCGTCTGGCCA
GAGAGACGCTGGATTGTGGCATTTCTCCAGCTGCTCCCCAGGGGGAGGGAGGACCTCTTT
GAGGCCTATAGGCCTAGCTTCTGACCCTGGCAACACCAGGCCCCAGCCTGCCTGAAGACC
AACAAGTCAGAGGGCAGCAAATTTTTAACTAGGCCCATTGATCATTAACCAGAGTAGGAA
GGAGTCCGAAGTCAGCATCTCTTGGGGACAGAAACCAGCTGGGCCTGGAGCCTCCTGCAG
AGATGCTGGGCCCCAAAGTCTGGTCCTCTGTGAGGCGGGGGCTGAGCAGGGCTTTGTCCA
GGACCATGGGGAGCTGGGCCTCAGGGGAGGGGAGGAAGATGGACATCTCAGGCATCTACC
CCCCCGTGACCACCCCCTTCACTGCCACAGCCGAGGTGGACTATGGGAAACTGGAGGAGA
ATCTGCACAAACTGGGCACCTTTCCCTTCCGAGGTTTCGTGGTCCAGGGTTCCAACGGCG
AGTTCCCCTTCCTGACCAGCAGCGAGCGCCTGGAGGTGGTGAGCCGAGTGCGCCAGGCCA
TGCCTAAGGACAAGCTCCTGCTAGCCGGCTCCGGCTGCGAGTCCACTCAAGCCACAGTGG
AGATGACGGTGAGCATGGCCCAGGTCGGGGCTGATGCCGTGATGGTGGTGACCCCTTGCT
ACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAGGTTGCTGACC
TGTCTCCAATACCTGTGGTGCTGTACAGTGTCCCAGCCAACACGGGGCTGGACCTGCCCG
TGGATGCGGTGGTCACGCTTTCCCAGCACCCGAATATCGTGGGCATCAAGGACAGCGGTG
GTGACGTGACCAGGATTGGGCTGATTGTTCACAAAACCAGGAGGCAGGATTTCCAGGTGC
TGGCTGGATCGGCGGGCTTCCTGCTGGCCAGCTATGCTGTGGGAGCTGTGGGGGGCGTGT
GCGCCCTGGCCAATGTCCTANGGGCTCAAGTGTGCCAGCTGGAGCGACTCTGCCTCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCGGAAGCCAGCCTGGTTCCTGGCTTTGGGGCTGGAAATTATGGGATGAGGGCCTGG
GGCCCCACTGGAGGCACCATTTAGTGTCAGGACCCCAGGAACCAGTCCTCCGTCTGGCCA
GAGAGACGCTGGATTGTGGCATTTCTCCAGCTGCTCCCCAGGGGGAGGGAGGACCTCTTT
GAGGCCTATAGGCCTAGCTTCTGACCCTGGCAACACCAGGCCCCAGCCTGCCTGAAGACC
AACAAGTCAGAGGGCAGCAAATTTTTAACTAGGCCCATTGATCATTAACCAGAGTAGGAA
GGAGTCCGAAGTCAGCATCTCTTGGGGACAGAAACCAGCTGGGCCTGGAGCCTCCTGCAG
AGATGCTGGGCCCCAAAGTCTGGTCCTCTGTGAGGCGGGGGCTGAGCAGGGCTTTGTCCA
GGACCATGGGGAGCTGGGCCTCAGGGGAGGGGAGGAAGATGGACATCTCAGGCATCTACC
CCCCCGTGACCACCCCCTTCACTGCCACAGCCGAGGTGGACTATGGGAAACTGGAGGAGA
ATCTGCACAAACTGGGCACCTTTCCCTTCCGAGGTTTCGTGGTCCAGGGTTCCAACGGCG
AGTTCCCCTTCCTGACCAGCAGCGAGCGCCTGGAGGTGGTGAGCCGAGTGCGCCAGGCCA
TGCCTAAGGACAAGCTCCTGCTAGCCGGCTCCGGCTGCGAGTCCACTCAAGCCACAGTGG
AGATGACGGTGAGCATGGCCCAGGTCGGGGCTGATGCCGTGATGGTGGTGACCCCTTGCT
ACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAGGTTGCTGACC
TGTCTCCAATACCTGTGGTGCTGTACAGTGTCCCAGCCAACACGGGGCTGGACCTGCCCG
TGGATGCGGTGGTCACGCTTTCCCAGCACCCGAATATCGTGGGCATCAAGGACAGCGGTG
GTGACGTGACCAGGATTGGGCTGATTGTTCACAAAACCAGGAGGCAGGATTTCCAGGTGC
TGGCTGGATCGGCGGGCTTCCTGCTGGCCAGCTATGCTGTGGGAGCTGTGGGGGGCGTGT
GCGCCCTGGCCAATGTCCTANGGGCTCAAGTGTGCCAGCTGGAGCGACTCTGCCTCACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61818461|ref|XP_582382.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61818461|ref|XP_582382.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               6-256, + strand, RNAz p=0.996304

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-256, + strand, RNAz p=0.996304

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_138413, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_138413, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-575, gnl|bosTau2|chr26 (10522203-10521633)
               

               
               6-575, gnl|Hg17|chr10 (99334083-99334663)
               

               
               6-575, gnl|Mm7|chr19 (41939403-41939951)
               


               
               798-969, gnl|bosTau2|chr26 (10510279-10510107)
               

               
               798-969, gnl|Hg17|chr10 (99349387-99349565)
               

               
               798-969, gnl|Mm7|chr19 (41954735-41954905)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-575, gnl|bosTau2|chr26 (10522203-10521633)
               

               
               6-575, gnl|Hg17|chr10 (99334083-99334663)
               

               
               6-575, gnl|Mm7|chr19 (41939403-41939951)
               


               
               798-969, gnl|bosTau2|chr26 (10510279-10510107)
               

               
               798-969, gnl|Hg17|chr10 (99349387-99349565)
               

               
               798-969, gnl|Mm7|chr19 (41954735-41954905)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               clu (0.119646)

	6-575, gnl\|bosTau2\|chr26 (10522203-10521633)
	6-575, gnl\|Hg17\|chr10 (99334083-99334663)
	6-575, gnl\|Mm7\|chr19 (41939403-41939951)

	798-969, gnl\|bosTau2\|chr26 (10510279-10510107)
	798-969, gnl\|Hg17\|chr10 (99349387-99349565)
	798-969, gnl\|Mm7\|chr19 (41954735-41954905)