Non-Coding RNA Search

Ss1.1-Liv1-LVR010071E01.5

Sequence:


               
               GCCCAGGGAGGGGAGTGGGTGTGCTATGGGGCTCCTGGTCTCCCTTCGTCCCCCTCCTGC
CCTGAGTGAGGGGGCTGACTCTGCCTCCCAGGACACAAGTCTCCAAAGTGCCTGTGAGGG
TGGGCCCTGCGCCCAGGCCCTCGGTACCCTCTCCCTTCGGCCTCCCCAGGCCCACCTCAG
CCCCGGCCCTGGGCCCTCCCAGGCGCCCTCCGGTGGACACCTGCCCTTGACTGTGACCAA
ACAACCTGGCGCATCTGGTGGCAGCCGGAAGCAGCCCTTCCAGACGCACCACCCCAGGCC
TCACCACCCCAGGCCGAGGGCTGTGGGCAGGCGGGGTGGGCGTGTCAAACACCCCGACTC
GCCTCCCCTTCTTTATTACCCTTACAAGTGGGGCCACTTATGTAGATATTTTAAATGTGG
GGTCACAAATCTCCTCCGGGGGAGTGGGCTTTGTGGGGGCTCTTGGAGCCGAGGGGTGTG
GTCTGAGTTGTGATTGGCTGGGGCTCACCCCCCACCCCTTGCCCACAACCCAGGTTAAAA
TCAAGAACCCAGGTTTTATTTCTGTTCCCTTTTCAAGACTTGCTGGCTGGCAATAGGCTT
CCGCAGGGTGAGAGCTGGGGGTGCCCGAGGCGCTGAGGGTGAGGGTCCGGGGAGCTTCCC
CAGCCTGGGTTTTCCACTCTCTTGCTTCCAGCCTGGGGCTCCGTCTTTGAGACCCAAAGG
TCCCCTGGGCAGGGCCTGGAGGCCTGTGAGGAACCCAGCCGGTCCGAGACTTTGAGGGGG
GCAGGAGCAGGGAGAGGCATCCTGGGCCCAGGATCCGAGGGGGGTGACCTGGCCTCCGTC
ACTGGGCGGGCACGGAAGGGCTGGGGAGAGACCAAAATCCCAGTCTCTCCCCGCCCTGCT
CCCTGGCAGGATGCTGTCTCGGGGCAGCAGCTCGGGTGAGACGGCCTGGGCTGGCCGAGG
CTGAGAAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGGGAGGGGAGTGGGTGTGCTATGGGGCTCCTGGTCTCCCTTCGTCCCCCTCCTGC
CCTGAGTGAGGGGGCTGACTCTGCCTCCCAGGACACAAGTCTCCAAAGTGCCTGTGAGGG
TGGGCCCTGCGCCCAGGCCCTCGGTACCCTCTCCCTTCGGCCTCCCCAGGCCCACCTCAG
CCCCGGCCCTGGGCCCTCCCAGGCGCCCTCCGGTGGACACCTGCCCTTGACTGTGACCAA
ACAACCTGGCGCATCTGGTGGCAGCCGGAAGCAGCCCTTCCAGACGCACCACCCCAGGCC
TCACCACCCCAGGCCGAGGGCTGTGGGCAGGCGGGGTGGGCGTGTCAAACACCCCGACTC
GCCTCCCCTTCTTTATTACCCTTACAAGTGGGGCCACTTATGTAGATATTTTAAATGTGG
GGTCACAAATCTCCTCCGGGGGAGTGGGCTTTGTGGGGGCTCTTGGAGCCGAGGGGTGTG
GTCTGAGTTGTGATTGGCTGGGGCTCACCCCCCACCCCTTGCCCACAACCCAGGTTAAAA
TCAAGAACCCAGGTTTTATTTCTGTTCCCTTTTCAAGACTTGCTGGCTGGCAATAGGCTT
CCGCAGGGTGAGAGCTGGGGGTGCCCGAGGCGCTGAGGGTGAGGGTCCGGGGAGCTTCCC
CAGCCTGGGTTTTCCACTCTCTTGCTTCCAGCCTGGGGCTCCGTCTTTGAGACCCAAAGG
TCCCCTGGGCAGGGCCTGGAGGCCTGTGAGGAACCCAGCCGGTCCGAGACTTTGAGGGGG
GCAGGAGCAGGGAGAGGCATCCTGGGCCCAGGATCCGAGGGGGGTGACCTGGCCTCCGTC
ACTGGGCGGGCACGGAAGGGCTGGGGAGAGACCAAAATCCCAGTCTCTCCCCGCCCTGCT
CCCTGGCAGGATGCTGTCTCGGGGCAGCAGCTCGGGTGAGACGGCCTGGGCTGGCCGAGG
CTGAGAAGCCAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               86-201, - strand, RNAz p=0.996582
               

               
               430-581, - strand, RNAz p=0.720501
               

               
               841-972, - strand, RNAz p=0.857034

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-201, - strand, RNAz p=0.996582
               

               
               430-581, - strand, RNAz p=0.720501
               

               
               841-972, - strand, RNAz p=0.857034

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               892-987, - strand, RNAmicro p=0.998886
               

               
               894-964, + strand, RNAmicro p=0.910859

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               892-987, - strand, RNAmicro p=0.998886
               

               
               894-964, + strand, RNAmicro p=0.910859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-972, gnl|bosTau2|chr2 (75100815-75099868)
               

               
               7-972, gnl|Hg17|chr1 (31013724-31012815)
               

               
               7-972, gnl|Mm7|chr4 (130038389-130039323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-972, gnl|bosTau2|chr2 (75100815-75099868)
               

               
               7-972, gnl|Hg17|chr1 (31013724-31012815)
               

               
               7-972, gnl|Mm7|chr4 (130038389-130039323)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	86-201, - strand, RNAz p=0.996582
	430-581, - strand, RNAz p=0.720501
	841-972, - strand, RNAz p=0.857034

	892-987, - strand, RNAmicro p=0.998886
	894-964, + strand, RNAmicro p=0.910859

	7-972, gnl\|bosTau2\|chr2 (75100815-75099868)
	7-972, gnl\|Hg17\|chr1 (31013724-31012815)
	7-972, gnl\|Mm7\|chr4 (130038389-130039323)