Ss1.1-Liv1-LVR010072C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCGGGTCCGCTGGCGTCCCCTTTCCGGCTGGTCCCCATGGAGGCGCTGGGGAAGCTG AAGCAGTTCGATGCCTACCCCAAGACTCTAGAGGACTTCCGGGTCAAGACCTGCGGGGGC GCCACGGTGACCATTGTCAGTGGCCTTCTCATGCTGCTACTCTTCCTGTCTGAGCTGCAG TATTACCTCACCACTGAGGTGCATCCTGAACTCTACGTGGACAAGTCCCGGGGAGATAAA CTGAAGATCAACATCGATGTGCTTTTCCCGCACATGCCTTGTGCCTATCTGAGCATCGAT GCCATGGATGTAGCTGGGGAACAGCAGCTGGATGTAGAACACAACCTGTTCAAGCAGCGG CTAGATAAGGATGGCATCCCCGTGAGCTCAGAGGCGGAGCGTCATGAGCTCGGGAAAGTC GAGATAAAGGTGTTTGACCCTGACTCCCTGGACCCCGATCGCTGTGAGAGCTGCTATGGC GCTGAGACGGAAGACATCAAGTGCTGTAACTCCTGCGAGGATGTGCGGGAGGCATATCGC CGTCGAGGCTGGGCCTTCAAGAACCCAGACACTATTGAGCAGTGCCGGCGGGAGGGCTTC AGCCAGAAGATGCAGGAGCAGAAGAATGAAGGCTGCCAGGTGTACGGCTTCTTGGAAGTC AACAAGGTGGCTGGGAACTTCCACTTCGCCCCCGGGAAGAGCTTCCAGCAGTCCCATGTG CATGTCCATGACCTCCAGAGCTTCGGCCTTGACAATATCAACATGACCCACTACATCCAG CACCTGTCATTCGGAGAGGACTACCCGGGCATTGTGAACCCCCTGGACCGCACCAACGTC ACCGCACCCCAAGCCTCCATGATGTTCCAGTACTTCGTGAAGGTCGTGCCCACGGTGTAC ATGAAGGTGGATGGCGAGGTGCTGAGGACAAATCAGTTCTCTGTGACCAGACATGAGAAG GTCGCCAGCGGGCTGATGGGTGATCAGGGGCTTCCTGGAGTCTTTGTGCTGTACGAGCTC TCGCCCATGATGGTGAAGCTGACAGAGAAGCACAGGTCCTTCACACACTTCCTGACGGGC GTGTGCGCCATCATCGGGGGAATGTTCACAGTGGCCGGACTCATCGACTCTCTCATCTAC CACTCGGCTCGAGCCATCCAGAAGAAAATTGATCTTGGAAAGACGACGTAGTTGTCCCCT CCCCACTCTGTTCCCTCCTCCTCCTGTTTCTCTTTGGCCTTGTGGTCATTTTCCCAGCCT CTTGTCCTTCCCTCCAAACCCCTATTCAGAGGTCGGTCACAGCCCCAGGTTGGTAAATGT ATTGATTGTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCGGGTCCGCTGGCGTCCCCTTTCCGGCTGGTCCCCATGGAGGCGCTGGGGAAGCTG AAGCAGTTCGATGCCTACCCCAAGACTCTAGAGGACTTCCGGGTCAAGACCTGCGGGGGC GCCACGGTGACCATTGTCAGTGGCCTTCTCATGCTGCTACTCTTCCTGTCTGAGCTGCAG TATTACCTCACCACTGAGGTGCATCCTGAACTCTACGTGGACAAGTCCCGGGGAGATAAA CTGAAGATCAACATCGATGTGCTTTTCCCGCACATGCCTTGTGCCTATCTGAGCATCGAT GCCATGGATGTAGCTGGGGAACAGCAGCTGGATGTAGAACACAACCTGTTCAAGCAGCGG CTAGATAAGGATGGCATCCCCGTGAGCTCAGAGGCGGAGCGTCATGAGCTCGGGAAAGTC GAGATAAAGGTGTTTGACCCTGACTCCCTGGACCCCGATCGCTGTGAGAGCTGCTATGGC GCTGAGACGGAAGACATCAAGTGCTGTAACTCCTGCGAGGATGTGCGGGAGGCATATCGC CGTCGAGGCTGGGCCTTCAAGAACCCAGACACTATTGAGCAGTGCCGGCGGGAGGGCTTC AGCCAGAAGATGCAGGAGCAGAAGAATGAAGGCTGCCAGGTGTACGGCTTCTTGGAAGTC AACAAGGTGGCTGGGAACTTCCACTTCGCCCCCGGGAAGAGCTTCCAGCAGTCCCATGTG CATGTCCATGACCTCCAGAGCTTCGGCCTTGACAATATCAACATGACCCACTACATCCAG CACCTGTCATTCGGAGAGGACTACCCGGGCATTGTGAACCCCCTGGACCGCACCAACGTC ACCGCACCCCAAGCCTCCATGATGTTCCAGTACTTCGTGAAGGTCGTGCCCACGGTGTAC ATGAAGGTGGATGGCGAGGTGCTGAGGACAAATCAGTTCTCTGTGACCAGACATGAGAAG GTCGCCAGCGGGCTGATGGGTGATCAGGGGCTTCCTGGAGTCTTTGTGCTGTACGAGCTC TCGCCCATGATGGTGAAGCTGACAGAGAAGCACAGGTCCTTCACACACTTCCTGACGGGC GTGTGCGCCATCATCGGGGGAATGTTCACAGTGGCCGGACTCATCGACTCTCTCATCTAC CACTCGGCTCGAGCCATCCAGAAGAAAATTGATCTTGGAAAGACGACGTAGTTGTCCCCT CCCCACTCTGTTCCCTCCTCCTCCTGTTTCTCTTTGGCCTTGTGGTCATTTTCCCAGCCT CTTGTCCTTCCCTCCAAACCCCTATTCAGAGGTCGGTCACAGCCCCAGGTTGGTAAATGT ATTGATTGTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 549-668, + strand, RNAz p=0.873755 | |
| 938-1057, + strand, RNAz p=0.720961 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 549-668, + strand, RNAz p=0.873755 | |
| 938-1057, + strand, RNAz p=0.720961 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr13 (44997972-44998098) | |
| 1-127, gnl|Hg17|chr20 (33593222-33593348) | |
| 1-127, gnl|Mm7|chr2 (155748960-155749086) | |
| 262-406, gnl|bosTau2|chr13 (44998693-44998837) | |
| 262-406, gnl|Hg17|chr20 (33593959-33594104) | |
| 262-406, gnl|Mm7|chr2 (155749693-155749837) | |
| 497-668, gnl|bosTau2|chr13 (45004780-45004951) | |
| 497-668, gnl|canFam2|chr24 (27472509-27472691) | |
| 497-668, gnl|danRer3|chrUn (19926538-19926356) | |
| 497-668, gnl|echTel1|scaffold_175143 (1126-1294) | |
| 497-668, gnl|fr1|chrUn (289370319-289370144) | |
| 497-668, gnl|galGal2|chr20 (1087430-1087257) | |
| 497-668, gnl|hg17|chr20 (33599663-33599845) | |
| 497-668, gnl|Hg17|chr20 (33599672-33599843) | |
| 497-668, gnl|mm7|chr2 (155751945-155752127) | |
| 497-668, gnl|Mm7|chr2 (155751954-155752125) | |
| 497-668, gnl|monDom2|scaffold_6 (11428334-11428152) | |
| 497-668, gnl|rheMac2|chr10 (28991532-28991350) | |
| 497-668, gnl|rn3|chr3 (146325041-146325223) | |
| 497-668, gnl|tetNig1|chrUn_random (11803572-11803392) | |
| 497-668, gnl|xenTro1|scaffold_35 (2681641-2681821) | |
| 914-1057, gnl|bosTau2|chr13 (45011165-45011308) | |
| 914-1057, gnl|canFam2|chr24 (27478221-27478384) | |
| 914-1057, gnl|danRer3|chrUn (19917737-19917554) | |
| 914-1057, gnl|echTel1|scaffold_312465 (88999-88834) | |
| 914-1057, gnl|fr1|chrUn (289365958-289365814) | |
| 914-1057, gnl|hg17|chr20 (33608137-33608300) | |
| 914-1057, gnl|Hg17|chr20 (33608153-33608296) | |
| 914-1057, gnl|mm7|chr2 (155758419-155758579) | |
| 914-1057, gnl|Mm7|chr2 (155758433-155758576) | |
| 914-1057, gnl|monDom2|scaffold_6 (11424737-11424589) | |
| 914-1057, gnl|panTro1|chr21 (35626451-35626614) | |
| 914-1057, gnl|rheMac2|chr10 (28982888-28982725) | |
| 914-1057, gnl|rn3|chr3 (146331165-146331328) | |
| 914-1057, gnl|tetNig1|chrUn_random (11799780-11799635) | |
| 914-1057, gnl|xenTro1|scaffold_35 (2689463-2689607) | |
| 1109-1332, gnl|bosTau2|chr13 (45011632-45011866) | |
| 1109-1332, gnl|Hg17|chr20 (33608607-33608815) | |
| 1109-1332, gnl|Mm7|chr2 (155758926-155759132) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr13 (44997972-44998098) | |
| 1-127, gnl|Hg17|chr20 (33593222-33593348) | |
| 1-127, gnl|Mm7|chr2 (155748960-155749086) | |
| 262-406, gnl|bosTau2|chr13 (44998693-44998837) | |
| 262-406, gnl|Hg17|chr20 (33593959-33594104) | |
| 262-406, gnl|Mm7|chr2 (155749693-155749837) | |
| 497-668, gnl|bosTau2|chr13 (45004780-45004951) | |
| 497-668, gnl|canFam2|chr24 (27472509-27472691) | |
| 497-668, gnl|danRer3|chrUn (19926538-19926356) | |
| 497-668, gnl|echTel1|scaffold_175143 (1126-1294) | |
| 497-668, gnl|fr1|chrUn (289370319-289370144) | |
| 497-668, gnl|galGal2|chr20 (1087430-1087257) | |
| 497-668, gnl|hg17|chr20 (33599663-33599845) | |
| 497-668, gnl|Hg17|chr20 (33599672-33599843) | |
| 497-668, gnl|mm7|chr2 (155751945-155752127) | |
| 497-668, gnl|Mm7|chr2 (155751954-155752125) | |
| 497-668, gnl|monDom2|scaffold_6 (11428334-11428152) | |
| 497-668, gnl|rheMac2|chr10 (28991532-28991350) | |
| 497-668, gnl|rn3|chr3 (146325041-146325223) | |
| 497-668, gnl|tetNig1|chrUn_random (11803572-11803392) | |
| 497-668, gnl|xenTro1|scaffold_35 (2681641-2681821) | |
| 914-1057, gnl|bosTau2|chr13 (45011165-45011308) | |
| 914-1057, gnl|canFam2|chr24 (27478221-27478384) | |
| 914-1057, gnl|danRer3|chrUn (19917737-19917554) | |
| 914-1057, gnl|echTel1|scaffold_312465 (88999-88834) | |
| 914-1057, gnl|fr1|chrUn (289365958-289365814) | |
| 914-1057, gnl|hg17|chr20 (33608137-33608300) | |
| 914-1057, gnl|Hg17|chr20 (33608153-33608296) | |
| 914-1057, gnl|mm7|chr2 (155758419-155758579) | |
| 914-1057, gnl|Mm7|chr2 (155758433-155758576) | |
| 914-1057, gnl|monDom2|scaffold_6 (11424737-11424589) | |
| 914-1057, gnl|panTro1|chr21 (35626451-35626614) | |
| 914-1057, gnl|rheMac2|chr10 (28982888-28982725) | |
| 914-1057, gnl|rn3|chr3 (146331165-146331328) | |
| 914-1057, gnl|tetNig1|chrUn_random (11799780-11799635) | |
| 914-1057, gnl|xenTro1|scaffold_35 (2689463-2689607) | |
| 1109-1332, gnl|bosTau2|chr13 (45011632-45011866) | |
| 1109-1332, gnl|Hg17|chr20 (33608607-33608815) | |
| 1109-1332, gnl|Mm7|chr2 (155758926-155759132) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cov (0.528611) | |
| eye (0.511509) | |
| clu (0.358938) | |
| duo (0.345602) | |
| csp (0.322373) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| eye (0.511509) | |
| clu (0.358938) | |
| duo (0.345602) | |
| csp (0.322373) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |