Non-Coding RNA Search

Ss1.1-Liv1-LVR010072C11.5

Sequence:


               
               AGCGTGCGCTATGGAGCCCCATGTCGCAGAGCTGAAGCAGAGGATTGAGGACACGTTATG
CCCTTTTGGCTTCGAAATTTACCCCTTCCAGGTCGCATGGTACAATGCACTCCTGCCTGC
AGCCTTCCACCTGCCCTTGCCAGGACCTACCCTGGCCTTCCTGGTACTCAGCACACCTGC
CATGTTTGACCGGGCCCTCAAGCCCTTCCTGCAGAGTTGCCACCTCCAACCACTGACAGA
CCCTGTGGACCAGTGTGTGGCCTACCACCTAGGCCGCGTTAGAAAGAGCCTCCCAGAGCT
GCAGATAGAAGTCATCGCTGACTACGAGGTCCACCCAAATCGGCGCCCCAAGATTCTGGC
CCAGACGGCAGCCCACGTGGCAGGTGCTGCTTACTACTACCAACGACAGGACGTGGAGTC
TGACCCCTGGGGCACCCAGCACATATCAGGTGTGTGTATACATCCCCGATTTGGGGGCTG
GTTTGCCATCCGGGGGGTGGTGCTGCTGCCAGGAATGGAGGTGCCGGATCTGCCACCCAC
AAAGCCCATTGACTGTGTACCTGCAAGAGCCGACCGGATCGCCCTGCTCGAACGCTTCAA
TTTCCATTGGCGTGACTGGACTTACCGGGACGTTGTGACCCCTCAGGAGCGCTACTCAGA
GGAGCAGAAGGCCTACTTCTCCACCCCGCCTGCCCAACGCTTGGCTTTACTGGGCTTGTC
CCAGCCTTCAGAAGAGCCTGGCCCTGCATCCCATGAGCTTCTCCCTACCACATCCTCACC
CAAGAAGCCTCAGAATCTTAGCAGAGGCTGGCTCAGCCCCAAGGCCTCACTGCCTGCATC
CCCCGGCCCTTGACACCCTACCCCCTCCCTGCAGATCCTCGTTCATGGCAGTGGCGCCTG
CTGGGATGTCCTTGGTTCTGGCAAGACGTTTTATTTGGGGTACAAGATAATTAGGGTACA
AGATAATTATTTTTGATAAAAGAATTGAGATTTTTTTGTATGTTGCCTTTTAGGACTGCA
CTTGTGGCACCTGGCGGTCCCCAGGCTAAGGGTCGAATGGGAGCTGTATGCCAGCCTACA
CCACAGCCACAGTAACTAGGGATCCAGGCCACGTCTTCAACCTACATGAAGACTCGCTGC
TATGCCAGATCCTTGACCAACTGAGTGGGGCCAGGGATCGAACCTGTGTCCTCATGGATA
CTAGTCAGATTGATTTCTGCTGAGCCACGACAGGAACTCCTGTAGTAGAGATCTTAAGTG
AAGATAACAAGGCTGAGAGTTTGCTCAAGACCAAAGGCCAGAGCAGATCCAGACGTCCCA
CCTGCCTTGGAATACGGATTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTGCGCTATGGAGCCCCATGTCGCAGAGCTGAAGCAGAGGATTGAGGACACGTTATG
CCCTTTTGGCTTCGAAATTTACCCCTTCCAGGTCGCATGGTACAATGCACTCCTGCCTGC
AGCCTTCCACCTGCCCTTGCCAGGACCTACCCTGGCCTTCCTGGTACTCAGCACACCTGC
CATGTTTGACCGGGCCCTCAAGCCCTTCCTGCAGAGTTGCCACCTCCAACCACTGACAGA
CCCTGTGGACCAGTGTGTGGCCTACCACCTAGGCCGCGTTAGAAAGAGCCTCCCAGAGCT
GCAGATAGAAGTCATCGCTGACTACGAGGTCCACCCAAATCGGCGCCCCAAGATTCTGGC
CCAGACGGCAGCCCACGTGGCAGGTGCTGCTTACTACTACCAACGACAGGACGTGGAGTC
TGACCCCTGGGGCACCCAGCACATATCAGGTGTGTGTATACATCCCCGATTTGGGGGCTG
GTTTGCCATCCGGGGGGTGGTGCTGCTGCCAGGAATGGAGGTGCCGGATCTGCCACCCAC
AAAGCCCATTGACTGTGTACCTGCAAGAGCCGACCGGATCGCCCTGCTCGAACGCTTCAA
TTTCCATTGGCGTGACTGGACTTACCGGGACGTTGTGACCCCTCAGGAGCGCTACTCAGA
GGAGCAGAAGGCCTACTTCTCCACCCCGCCTGCCCAACGCTTGGCTTTACTGGGCTTGTC
CCAGCCTTCAGAAGAGCCTGGCCCTGCATCCCATGAGCTTCTCCCTACCACATCCTCACC
CAAGAAGCCTCAGAATCTTAGCAGAGGCTGGCTCAGCCCCAAGGCCTCACTGCCTGCATC
CCCCGGCCCTTGACACCCTACCCCCTCCCTGCAGATCCTCGTTCATGGCAGTGGCGCCTG
CTGGGATGTCCTTGGTTCTGGCAAGACGTTTTATTTGGGGTACAAGATAATTAGGGTACA
AGATAATTATTTTTGATAAAAGAATTGAGATTTTTTTGTATGTTGCCTTTTAGGACTGCA
CTTGTGGCACCTGGCGGTCCCCAGGCTAAGGGTCGAATGGGAGCTGTATGCCAGCCTACA
CCACAGCCACAGTAACTAGGGATCCAGGCCACGTCTTCAACCTACATGAAGACTCGCTGC
TATGCCAGATCCTTGACCAACTGAGTGGGGCCAGGGATCGAACCTGTGTCCTCATGGATA
CTAGTCAGATTGATTTCTGCTGAGCCACGACAGGAACTCCTGTAGTAGAGATCTTAAGTG
AAGATAACAAGGCTGAGAGTTTGCTCAAGACCAAAGGCCAGAGCAGATCCAGACGTCCCA
CCTGCCTTGGAATACGGATTACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31455227|gb|AAH06122.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31455227|gb|AAH06122.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-244, - strand, RNAz p=0.905121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-244, - strand, RNAz p=0.905121

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               86-286, gnl|bosTau2|chr3 (70294710-70294510)
               

               
               86-286, gnl|canFam2|chr15 (17865885-17865674)
               

               
               86-286, gnl|danRer3|chrNA (174065821-174066012)
               

               
               86-286, gnl|galGal2|chr8 (21388085-21388296)
               

               
               86-286, gnl|hg17|chr1 (45642110-45642321)
               

               
               86-286, gnl|Hg17|chr1 (45642115-45642315)
               

               
               86-286, gnl|loxAfr1|scaffold_2997 (31935-31724)
               

               
               86-286, gnl|mm7|chr4 (116082515-116082316)
               

               
               86-286, gnl|Mm7|chr4 (116082520-116082320)
               

               
               86-286, gnl|monDom2|scaffold_70 (7518137-7517927)
               

               
               86-286, gnl|oryCun1|scaffold_199864 (99603-99392)
               

               
               86-286, gnl|panTro1|chr1_random (65033078-65032867)
               

               
               86-286, gnl|rheMac2|chr1 (48426431-48426642)
               

               
               86-286, gnl|rn3|chr5 (137004526-137004315)
               

               
               86-286, gnl|tetNig1|chr1_random (2937630-2937452)
               

               
               86-286, gnl|xenTro1|scaffold_1 (7393497-7393283)
               


               
               435-761, gnl|bosTau2|chr3 (70292639-70292313)
               

               
               435-761, gnl|Hg17|chr1 (45643556-45643882)
               

               
               435-761, gnl|Mm7|chr4 (116080311-116079988)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-286, gnl|bosTau2|chr3 (70294710-70294510)
               

               
               86-286, gnl|canFam2|chr15 (17865885-17865674)
               

               
               86-286, gnl|danRer3|chrNA (174065821-174066012)
               

               
               86-286, gnl|galGal2|chr8 (21388085-21388296)
               

               
               86-286, gnl|hg17|chr1 (45642110-45642321)
               

               
               86-286, gnl|Hg17|chr1 (45642115-45642315)
               

               
               86-286, gnl|loxAfr1|scaffold_2997 (31935-31724)
               

               
               86-286, gnl|mm7|chr4 (116082515-116082316)
               

               
               86-286, gnl|Mm7|chr4 (116082520-116082320)
               

               
               86-286, gnl|monDom2|scaffold_70 (7518137-7517927)
               

               
               86-286, gnl|oryCun1|scaffold_199864 (99603-99392)
               

               
               86-286, gnl|panTro1|chr1_random (65033078-65032867)
               

               
               86-286, gnl|rheMac2|chr1 (48426431-48426642)
               

               
               86-286, gnl|rn3|chr5 (137004526-137004315)
               

               
               86-286, gnl|tetNig1|chr1_random (2937630-2937452)
               

               
               86-286, gnl|xenTro1|scaffold_1 (7393497-7393283)
               


               
               435-761, gnl|bosTau2|chr3 (70292639-70292313)
               

               
               435-761, gnl|Hg17|chr1 (45643556-45643882)
               

               
               435-761, gnl|Mm7|chr4 (116080311-116079988)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               med (0.116252)

	86-286, gnl\|bosTau2\|chr3 (70294710-70294510)
	86-286, gnl\|canFam2\|chr15 (17865885-17865674)
	86-286, gnl\|danRer3\|chrNA (174065821-174066012)
	86-286, gnl\|galGal2\|chr8 (21388085-21388296)
	86-286, gnl\|hg17\|chr1 (45642110-45642321)
	86-286, gnl\|Hg17\|chr1 (45642115-45642315)
	86-286, gnl\|loxAfr1\|scaffold_2997 (31935-31724)
	86-286, gnl\|mm7\|chr4 (116082515-116082316)
	86-286, gnl\|Mm7\|chr4 (116082520-116082320)
	86-286, gnl\|monDom2\|scaffold_70 (7518137-7517927)
	86-286, gnl\|oryCun1\|scaffold_199864 (99603-99392)
	86-286, gnl\|panTro1\|chr1_random (65033078-65032867)
	86-286, gnl\|rheMac2\|chr1 (48426431-48426642)
	86-286, gnl\|rn3\|chr5 (137004526-137004315)
	86-286, gnl\|tetNig1\|chr1_random (2937630-2937452)
	86-286, gnl\|xenTro1\|scaffold_1 (7393497-7393283)

	435-761, gnl\|bosTau2\|chr3 (70292639-70292313)
	435-761, gnl\|Hg17\|chr1 (45643556-45643882)
	435-761, gnl\|Mm7\|chr4 (116080311-116079988)