Non-Coding RNA Search

Ss1.1-Liv1-LVR010072E03.5

Sequence:


               
               GCAGGAAGGAACTAGTCTGCGAGCGCTTGCTGGGCTTGTGCCTCTGACTCAGGAGAGACG
CTTCAATCGGCTTTGCCTCTGGACTTGCGGTGAAAGGCCTCTCTTCGGACGCTGACTGGC
CATCGGTGTTCAGGTGTCTGGACTCTAACAGCCTCCAGGGCCGGACCCCACAGCCTTCCT
TCCAGCTCCTAGACCCCAGCAGAGCCTGAGCCATGGCTTCCATGGGGCTGCAGGTGATGG
GTATCGCCCTGGCCGTTCTGGGCTGGCTGGGGGCCATCCTGAGCTGCGCGCTGCCCATGT
GGCGCGTCACGGCCTTCATCGGCAGCAACATCGTCACGTCGCAGACCATCTGGGAGGGCC
TGTGGATGAACTGCGTGGTGCAGAGCACGGGCCAGATGCAGTGCAAGGTGTACGACTCGC
TGCTGGCGCTGCCGCAGGACCTGCAGGCGGCCCGCGCCCTCATCGTCATCTGTATCATCC
TGGCCGTGCTAGGTGTGCTGCTGTCGGTGGTGGGCGGCAAGTGCACCAACTGCGTGGATG
ATGAGAGCGCCAAGGCCAAGACCATGATCGTGGCCGGTGTGGTGTTCCTGCTGGCCGGCC
TGCTGGTGATGGTGCCCGTGTCCTGGACCGCCCACAATGTCATCCGCGACTTCTACAACC
CCCTGGTGGCCTCGGGCCAGAAGCGGGAGATGGGTGCCTCGCTCTACATCGGCTGGGCTG
CCTCTGGCCTGCTGATGCTCGGTGGCGCCCTGCTTTGCTGCAACTGCCCACCCCGTACCG
ACAAGCCCTACTCAGCCAAGTACTCCGCCGCCCGCTCCGCCCCCGCCAGCAACTACGTGT
AAGGTGCTACCGCTGATTCTTTTCCTTTCAGCTTGGTTTCTCCCTGGACTGCAATCTGTG
ACTCCAGAATGGCCCTGCCACGGGCCGCAGGCTGCCAGGGCTGGGCAAGCAGGGACTGAG
CCGGGCCGCTGGCCAGAGGCCCCTCAGCGCCTTCTGACCCTCTCGGACACCTTCCCAAGG
CCACTTCCAATGCTAGCAAGGATGGATGGAAAGAGACTCCTGCGCTGCCCTCCTCTGAAT
GGCTGTGGATACTGGGGGCTGGCTCCTGCTGGCCAGGACAGCTCAGCCCTGACTTTGCGT
GGGCTCTGCCTCTGAGTGGACAATGTCTCCTCCTTTGACCTTCCCCACTGCCTCCGCCGG
CATCCTCTGGGTGGGTCAGCCAGCACTTGGGCTGTGCCTTGCCCACAGAAACCTGTGGCC
ATGAGATCGGCTGCCTCGCTCACCCACCTGCCCGTGGAACACAGTCACCGGAGTGGTGTG
GACAGACAGGTTTAGAGGGGAGGGGCAGAGGTGCTACAAACTGGTTTGGGTAGTGGTGGG
GGAGGGGGCCACAGAGGCTGTCCAGGTGGCCCGCACCCCTTCCTGCCCCCACCCTGCCAC
CTCAGGGCTCTGCCTCTGCAACCTCAGCGGGCGGACCCTGGGCCCCTCGGAGACTGGCCA
CCTCTGGAATCTTCCACCCCTGCCAAGGTCATTGACTAGCCTGGGGAGGGCAGGGAGGAC
AGTCTTCCTCTGGCCCTCAGCCAGGAAGCCCTGGGGCTTTTCCGGCCTCCTGTGTGGTTT
CTGTTTTGTAAGTTAAACTATTTGTCACGGTAATTGCTATTATTTTCTACAATAAATGGG
ACCTGTGCACAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AGACTAGTTCTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGAAGGAACTAGTCTGCGAGCGCTTGCTGGGCTTGTGCCTCTGACTCAGGAGAGACG
CTTCAATCGGCTTTGCCTCTGGACTTGCGGTGAAAGGCCTCTCTTCGGACGCTGACTGGC
CATCGGTGTTCAGGTGTCTGGACTCTAACAGCCTCCAGGGCCGGACCCCACAGCCTTCCT
TCCAGCTCCTAGACCCCAGCAGAGCCTGAGCCATGGCTTCCATGGGGCTGCAGGTGATGG
GTATCGCCCTGGCCGTTCTGGGCTGGCTGGGGGCCATCCTGAGCTGCGCGCTGCCCATGT
GGCGCGTCACGGCCTTCATCGGCAGCAACATCGTCACGTCGCAGACCATCTGGGAGGGCC
TGTGGATGAACTGCGTGGTGCAGAGCACGGGCCAGATGCAGTGCAAGGTGTACGACTCGC
TGCTGGCGCTGCCGCAGGACCTGCAGGCGGCCCGCGCCCTCATCGTCATCTGTATCATCC
TGGCCGTGCTAGGTGTGCTGCTGTCGGTGGTGGGCGGCAAGTGCACCAACTGCGTGGATG
ATGAGAGCGCCAAGGCCAAGACCATGATCGTGGCCGGTGTGGTGTTCCTGCTGGCCGGCC
TGCTGGTGATGGTGCCCGTGTCCTGGACCGCCCACAATGTCATCCGCGACTTCTACAACC
CCCTGGTGGCCTCGGGCCAGAAGCGGGAGATGGGTGCCTCGCTCTACATCGGCTGGGCTG
CCTCTGGCCTGCTGATGCTCGGTGGCGCCCTGCTTTGCTGCAACTGCCCACCCCGTACCG
ACAAGCCCTACTCAGCCAAGTACTCCGCCGCCCGCTCCGCCCCCGCCAGCAACTACGTGT
AAGGTGCTACCGCTGATTCTTTTCCTTTCAGCTTGGTTTCTCCCTGGACTGCAATCTGTG
ACTCCAGAATGGCCCTGCCACGGGCCGCAGGCTGCCAGGGCTGGGCAAGCAGGGACTGAG
CCGGGCCGCTGGCCAGAGGCCCCTCAGCGCCTTCTGACCCTCTCGGACACCTTCCCAAGG
CCACTTCCAATGCTAGCAAGGATGGATGGAAAGAGACTCCTGCGCTGCCCTCCTCTGAAT
GGCTGTGGATACTGGGGGCTGGCTCCTGCTGGCCAGGACAGCTCAGCCCTGACTTTGCGT
GGGCTCTGCCTCTGAGTGGACAATGTCTCCTCCTTTGACCTTCCCCACTGCCTCCGCCGG
CATCCTCTGGGTGGGTCAGCCAGCACTTGGGCTGTGCCTTGCCCACAGAAACCTGTGGCC
ATGAGATCGGCTGCCTCGCTCACCCACCTGCCCGTGGAACACAGTCACCGGAGTGGTGTG
GACAGACAGGTTTAGAGGGGAGGGGCAGAGGTGCTACAAACTGGTTTGGGTAGTGGTGGG
GGAGGGGGCCACAGAGGCTGTCCAGGTGGCCCGCACCCCTTCCTGCCCCCACCCTGCCAC
CTCAGGGCTCTGCCTCTGCAACCTCAGCGGGCGGACCCTGGGCCCCTCGGAGACTGGCCA
CCTCTGGAATCTTCCACCCCTGCCAAGGTCATTGACTAGCCTGGGGAGGGCAGGGAGGAC
AGTCTTCCTCTGGCCCTCAGCCAGGAAGCCCTGGGGCTTTTCCGGCCTCCTGTGTGGTTT
CTGTTTTGTAAGTTAAACTATTTGTCACGGTAATTGCTATTATTTTCTACAATAAATGGG
ACCTGTGCACAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AGACTAGTTCTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLD4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD4_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               369-568, - strand, RNAz p=0.885327

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-568, - strand, RNAz p=0.885327

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1159, gnl|bosTau2|chr25 (30057051-30058209)
               

               
               1-1159, gnl|Hg17|chr7 (72689998-72691139)
               

               
               1-1159, gnl|Mm7|chr5 (133918194-133917046)
               


               
               209-761, gnl|bosTau2|chr17 (43900821-43900269)
               

               
               209-761, gnl|Hg17|chr22 (17886336-17885784)
               

               
               209-761, gnl|Mm7|chr16_random (3263238-3262686)
               


               
               1453-1695, gnl|bosTau2|chr25 (30058494-30058734)
               

               
               1453-1695, gnl|Hg17|chr7 (72691408-72691667)
               

               
               1453-1695, gnl|Mm7|chr5 (133916700-133916404)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1159, gnl|bosTau2|chr25 (30057051-30058209)
               

               
               1-1159, gnl|Hg17|chr7 (72689998-72691139)
               

               
               1-1159, gnl|Mm7|chr5 (133918194-133917046)
               


               
               209-761, gnl|bosTau2|chr17 (43900821-43900269)
               

               
               209-761, gnl|Hg17|chr22 (17886336-17885784)
               

               
               209-761, gnl|Mm7|chr16_random (3263238-3262686)
               


               
               1453-1695, gnl|bosTau2|chr25 (30058494-30058734)
               

               
               1453-1695, gnl|Hg17|chr7 (72691408-72691667)
               

               
               1453-1695, gnl|Mm7|chr5 (133916700-133916404)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mcp (1.02389)
               

               
               cty (0.832639)
               

               
               ute (0.531138)
               

               
               nco (0.485201)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (1.02389)
               

               
               cty (0.832639)
               

               
               ute (0.531138)
               

               
               nco (0.485201)
               

               
               cbe (0.478469)
               

               
               amn (0.417711)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               eep (0.245128)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-1159, gnl\|bosTau2\|chr25 (30057051-30058209)
	1-1159, gnl\|Hg17\|chr7 (72689998-72691139)
	1-1159, gnl\|Mm7\|chr5 (133918194-133917046)

	209-761, gnl\|bosTau2\|chr17 (43900821-43900269)
	209-761, gnl\|Hg17\|chr22 (17886336-17885784)
	209-761, gnl\|Mm7\|chr16_random (3263238-3262686)

	1453-1695, gnl\|bosTau2\|chr25 (30058494-30058734)
	1453-1695, gnl\|Hg17\|chr7 (72691408-72691667)
	1453-1695, gnl\|Mm7\|chr5 (133916700-133916404)

	mcp (1.02389)
	cty (0.832639)
	ute (0.531138)
	nco (0.485201)
	cbe (0.478469)
	amn (0.417711)
	ill (0.351185)
	duo (0.345602)
	eep (0.245128)
	col (0.195008)
	ton (0.1755)
	ctl (0.153069)
	liv (0.146284)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	ebs (0.118301)
	jej (0.0989218)
	eje (0.0988338)