Non-Coding RNA Search

Ss1.1-Liv1-LVR010073C10.5

Sequence:


               
               CTTTTTTGAGTTGTCCTCCCCCGCCTGCCAGAAGCGAACCATGAAGGACCGCTCTTCAAC
ACCCCCCTTACATGTTCACGTGGACTGGTCTGCATCCGCCGCGGCGTCTCCATGGCACGA
CCCTGGCCTCCGACTTCAACGACTTCATAAGGAGGCGTTTCTGGGCGCAGCCGTGTCGCT
CCTGGTTTCCATCGTGTGGTAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGA
GGACACCTTGTGGCGCACCCAGTGTGACCGTGACGATCAACCTTTTTTGAGTTGTCCTCC
CCCGCCTGCCAGAAGCGAACCATGAAGGACCGCTCTTCAACACCCCCCTTACATGTTCAC
GTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAAGCCTCCGCGACC
AGCAGCCAGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGT
GTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCCGCCCGGCATGTG
GGATGCAAGTGGGAGGTAGGCTCATTCTTGTTCAGGCTTTTCTTCTCGGACTGGTCAGGC
TCTAGCAGGCCTTGCACTCAGTGTGGTTCAGGGTCGGCTGTAGCTCTCAGGCATCCCAGT
AGGTCCCGCAGACTGAGCGCCTTGCCAAACCCTGAAGGGGCAAGAATCTTCTCGAGTCCT
TAGGGCACCACGATGCAGCAGCTCCCGCTCTCCCAGTGGGCAGAGAGGGAAGCCAAGGCT
CAGAGAGGTGGAGTCTCACAGAGAAAGGAGCAGAGCTAGAGTTAGGACTCGGGAGCGTCT
CCTTCTAGAAGCTGTGCTCGTAGCCTCTCTGATCTATGTGCGAGGAGCTACATACGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTGAGTTGTCCTCCCCCGCCTGCCAGAAGCGAACCATGAAGGACCGCTCTTCAAC
ACCCCCCTTACATGTTCACGTGGACTGGTCTGCATCCGCCGCGGCGTCTCCATGGCACGA
CCCTGGCCTCCGACTTCAACGACTTCATAAGGAGGCGTTTCTGGGCGCAGCCGTGTCGCT
CCTGGTTTCCATCGTGTGGTAAGAACGGAGTAACGAGTCTCACGCAGAAAAAGGTCTTGA
GGACACCTTGTGGCGCACCCAGTGTGACCGTGACGATCAACCTTTTTTGAGTTGTCCTCC
CCCGCCTGCCAGAAGCGAACCATGAAGGACCGCTCTTCAACACCCCCCTTACATGTTCAC
GTGGATGAGAACACCCCTGTCCACGTCCACATAAAAAAACTCCCGAAAGCCTCCGCGACC
AGCAGCCAGAAATCTCATAAGCGCGGAATGAAAGGGGACACCGTGAATGTGCGGCGGAGT
GTCCGGGTGAAAACCAAGGTACCTTGGATGCCCCCTGGAAAATCATCCGCCCGGCATGTG
GGATGCAAGTGGGAGGTAGGCTCATTCTTGTTCAGGCTTTTCTTCTCGGACTGGTCAGGC
TCTAGCAGGCCTTGCACTCAGTGTGGTTCAGGGTCGGCTGTAGCTCTCAGGCATCCCAGT
AGGTCCCGCAGACTGAGCGCCTTGCCAAACCCTGAAGGGGCAAGAATCTTCTCGAGTCCT
TAGGGCACCACGATGCAGCAGCTCCCGCTCTCCCAGTGGGCAGAGAGGGAAGCCAAGGCT
CAGAGAGGTGGAGTCTCACAGAGAAAGGAGCAGAGCTAGAGTTAGGACTCGGGAGCGTCT
CCTTCTAGAAGCTGTGCTCGTAGCCTCTCTGATCTATGTGCGAGGAGCTACATACGCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958833|emb|CAI13501.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958833|emb|CAI13501.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-545, + strand, RNAz p=0.963248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-545, + strand, RNAz p=0.963248

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC091500, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC091500, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               82-186, gnl|bosTau2|chr11 (78325582-78325686)
               

               
               82-186, gnl|canFam2|chr9 (58439812-58439697)
               

               
               82-186, gnl|danRer3|chr24 (25803577-25803690)
               

               
               82-186, gnl|dasNov1|scaffold_65797 (730-845)
               

               
               82-186, gnl|echTel1|scaffold_303808 (32311-32426)
               

               
               82-186, gnl|galGal2|chr17 (5643819-5643730)
               

               
               82-186, gnl|hg17|chr9 (128297962-128298077)
               

               
               82-186, gnl|Hg17|chr9 (128297986-128298090)
               

               
               82-186, gnl|mm7|chr2 (29897106-29897221)
               

               
               82-186, gnl|Mm7|chr2 (29897130-29897234)
               

               
               82-186, gnl|monDom2|scaffold_51 (3013701-3013816)
               

               
               82-186, gnl|panTro1|chr11 (113130716-113130831)
               

               
               82-186, gnl|rheMac2|chr15 (10411895-10411780)
               

               
               82-186, gnl|rn3|chr3 (8877275-8877390)
               


               
               427-782, gnl|bosTau2|chr11 (78329594-78329953)
               

               
               427-782, gnl|Hg17|chr9 (128302772-128303127)
               

               
               427-782, gnl|Mm7|chr2 (29900752-29901079)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-186, gnl|bosTau2|chr11 (78325582-78325686)
               

               
               82-186, gnl|canFam2|chr9 (58439812-58439697)
               

               
               82-186, gnl|danRer3|chr24 (25803577-25803690)
               

               
               82-186, gnl|dasNov1|scaffold_65797 (730-845)
               

               
               82-186, gnl|echTel1|scaffold_303808 (32311-32426)
               

               
               82-186, gnl|galGal2|chr17 (5643819-5643730)
               

               
               82-186, gnl|hg17|chr9 (128297962-128298077)
               

               
               82-186, gnl|Hg17|chr9 (128297986-128298090)
               

               
               82-186, gnl|mm7|chr2 (29897106-29897221)
               

               
               82-186, gnl|Mm7|chr2 (29897130-29897234)
               

               
               82-186, gnl|monDom2|scaffold_51 (3013701-3013816)
               

               
               82-186, gnl|panTro1|chr11 (113130716-113130831)
               

               
               82-186, gnl|rheMac2|chr15 (10411895-10411780)
               

               
               82-186, gnl|rn3|chr3 (8877275-8877390)
               


               
               427-782, gnl|bosTau2|chr11 (78329594-78329953)
               

               
               427-782, gnl|Hg17|chr9 (128302772-128303127)
               

               
               427-782, gnl|Mm7|chr2 (29900752-29901079)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	82-186, gnl\|bosTau2\|chr11 (78325582-78325686)
	82-186, gnl\|canFam2\|chr9 (58439812-58439697)
	82-186, gnl\|danRer3\|chr24 (25803577-25803690)
	82-186, gnl\|dasNov1\|scaffold_65797 (730-845)
	82-186, gnl\|echTel1\|scaffold_303808 (32311-32426)
	82-186, gnl\|galGal2\|chr17 (5643819-5643730)
	82-186, gnl\|hg17\|chr9 (128297962-128298077)
	82-186, gnl\|Hg17\|chr9 (128297986-128298090)
	82-186, gnl\|mm7\|chr2 (29897106-29897221)
	82-186, gnl\|Mm7\|chr2 (29897130-29897234)
	82-186, gnl\|monDom2\|scaffold_51 (3013701-3013816)
	82-186, gnl\|panTro1\|chr11 (113130716-113130831)
	82-186, gnl\|rheMac2\|chr15 (10411895-10411780)
	82-186, gnl\|rn3\|chr3 (8877275-8877390)

	427-782, gnl\|bosTau2\|chr11 (78329594-78329953)
	427-782, gnl\|Hg17\|chr9 (128302772-128303127)
	427-782, gnl\|Mm7\|chr2 (29900752-29901079)