Non-Coding RNA Search

Ss1.1-Liv1-LVR010073D04.5

Sequence:


               
               CCGAGGCGGGCCTCCTCCTGCTCCGCGAAGGGGAAGACGTGGCAGTGGAAGCAGTCCGTG
ATCTTGCGGATCTTCTGCCCGATCTGCTCGCCCCAGTAGGAGATGAGGAAGGTCGTCCAG
GTGGCGGGCTCACCCGTCACCGGGTCCTCCAGCTGCTGCTCCGTCTCCCTGAAGCTGGCG
ATGAGGAAGCCGCGGCAGGCCCTCCAGAGCAGGCGCTCCAGGGCGGCGGCCTTGTGAGGT
TCCACGGCACCTGCCACGAAGTTGACCCTCAGGTCCTGGTGTGGCCCCCCGGGGGCCTGG
AGCAGGGGGGTCCTTTCCAAGGGCATGTCAGTGTGCGTGGCTGCCAACTGAGGACCATGG
CCATGGCCTTGGCTCAGCACGGCCGAGTGGAGCTGCAGCTGGTGCAGCTGGGCCCGCAGG
GCTTGCTGGTTGCCCCGCACGTCCCGGAGCTCCTGTGCCAGGCGATCCGACTCTTCTTGG
ATGCGCAGAAGGTCACGGGGTGGGGGTGCCAGCAGCACCCCCTCAGGCAGAGGCAGCGCC
AGACCAGCCCGCCGCACCTCCGCCTGCAGGAAGGTGAAGGTCTTCTCCAGCTCCTCGCAG
CGCCGAACATCCACCACAAAGCGTCTCTGGAAGGCACTCACCGAGGCGTTGAGATCTCTG
AACTCCACGAGGCCCAGCTCGCCGAGCTGGCTCACGCAGGTGTAGGCAGCAGCTGTGGGC
AGGAAGAGCCGGACCAGTGCCACCTCCTCACTCCGGAACATGGAGCCCATGGTTCCCGGG
CTTGGCTGCACGCGTCGCGGCTCCGCTCGGCACTCCCGGCTCTGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGGCGGGCCTCCTCCTGCTCCGCGAAGGGGAAGACGTGGCAGTGGAAGCAGTCCGTG
ATCTTGCGGATCTTCTGCCCGATCTGCTCGCCCCAGTAGGAGATGAGGAAGGTCGTCCAG
GTGGCGGGCTCACCCGTCACCGGGTCCTCCAGCTGCTGCTCCGTCTCCCTGAAGCTGGCG
ATGAGGAAGCCGCGGCAGGCCCTCCAGAGCAGGCGCTCCAGGGCGGCGGCCTTGTGAGGT
TCCACGGCACCTGCCACGAAGTTGACCCTCAGGTCCTGGTGTGGCCCCCCGGGGGCCTGG
AGCAGGGGGGTCCTTTCCAAGGGCATGTCAGTGTGCGTGGCTGCCAACTGAGGACCATGG
CCATGGCCTTGGCTCAGCACGGCCGAGTGGAGCTGCAGCTGGTGCAGCTGGGCCCGCAGG
GCTTGCTGGTTGCCCCGCACGTCCCGGAGCTCCTGTGCCAGGCGATCCGACTCTTCTTGG
ATGCGCAGAAGGTCACGGGGTGGGGGTGCCAGCAGCACCCCCTCAGGCAGAGGCAGCGCC
AGACCAGCCCGCCGCACCTCCGCCTGCAGGAAGGTGAAGGTCTTCTCCAGCTCCTCGCAG
CGCCGAACATCCACCACAAAGCGTCTCTGGAAGGCACTCACCGAGGCGTTGAGATCTCTG
AACTCCACGAGGCCCAGCTCGCCGAGCTGGCTCACGCAGGTGTAGGCAGCAGCTGTGGGC
AGGAAGAGCCGGACCAGTGCCACCTCCTCACTCCGGAACATGGAGCCCATGGTTCCCGGG
CTTGGCTGCACGCGTCGCGGCTCCGCTCGGCACTCCCGGCTCTGCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45386002|gb|AAS59834.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45386002|gb|AAS59834.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-565, - strand, RNAz p=0.960307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-565, - strand, RNAz p=0.960307

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               52-152, gnl|bosTau2|chr29 (39493780-39493880)
               

               
               52-152, gnl|Hg17|chr11 (67567696-67567597)
               

               
               52-152, gnl|Mm7|chr19 (3797688-3797788)
               


               
               364-574, gnl|bosTau2|chr29 (39494335-39494545)
               

               
               364-574, gnl|canFam2|chr18 (52816392-52816237)
               

               
               364-574, gnl|danRer3|chr19 (62724552-62724395)
               

               
               364-574, gnl|echTel1|scaffold_206206 (15511-15675)
               

               
               364-574, gnl|fr1|chrUn (51997066-51997237)
               

               
               364-574, gnl|galGal2|chr5 (35939-36101)
               

               
               364-574, gnl|hg17|chr11 (67566659-67566823)
               

               
               364-574, gnl|Hg17|chr11 (67566896-67566686)
               

               
               364-574, gnl|mm7|chr19 (3798562-3798400)
               

               
               364-574, gnl|Mm7|chr19 (3798325-3798535)
               

               
               364-574, gnl|monDom2|scaffold_101 (41358-41554)
               

               
               364-574, gnl|panTro1|chr9_random (32479219-32479055)
               

               
               364-574, gnl|rheMac2|chr14 (6678714-6678550)
               

               
               364-574, gnl|rn3|chr1 (206581972-206581810)
               

               
               364-574, gnl|tetNig1|chr1 (362490-362313)
               


               
               654-803, gnl|bosTau2|chr29 (39496069-39496216)
               

               
               654-803, gnl|Hg17|chr11 (67565431-67565286)
               

               
               654-803, gnl|Mm7|chr19 (3799391-3799526)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-152, gnl|bosTau2|chr29 (39493780-39493880)
               

               
               52-152, gnl|Hg17|chr11 (67567696-67567597)
               

               
               52-152, gnl|Mm7|chr19 (3797688-3797788)
               


               
               364-574, gnl|bosTau2|chr29 (39494335-39494545)
               

               
               364-574, gnl|canFam2|chr18 (52816392-52816237)
               

               
               364-574, gnl|danRer3|chr19 (62724552-62724395)
               

               
               364-574, gnl|echTel1|scaffold_206206 (15511-15675)
               

               
               364-574, gnl|fr1|chrUn (51997066-51997237)
               

               
               364-574, gnl|galGal2|chr5 (35939-36101)
               

               
               364-574, gnl|hg17|chr11 (67566659-67566823)
               

               
               364-574, gnl|Hg17|chr11 (67566896-67566686)
               

               
               364-574, gnl|mm7|chr19 (3798562-3798400)
               

               
               364-574, gnl|Mm7|chr19 (3798325-3798535)
               

               
               364-574, gnl|monDom2|scaffold_101 (41358-41554)
               

               
               364-574, gnl|panTro1|chr9_random (32479219-32479055)
               

               
               364-574, gnl|rheMac2|chr14 (6678714-6678550)
               

               
               364-574, gnl|rn3|chr1 (206581972-206581810)
               

               
               364-574, gnl|tetNig1|chr1 (362490-362313)
               


               
               654-803, gnl|bosTau2|chr29 (39496069-39496216)
               

               
               654-803, gnl|Hg17|chr11 (67565431-67565286)
               

               
               654-803, gnl|Mm7|chr19 (3799391-3799526)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	52-152, gnl\|bosTau2\|chr29 (39493780-39493880)
	52-152, gnl\|Hg17\|chr11 (67567696-67567597)
	52-152, gnl\|Mm7\|chr19 (3797688-3797788)

	364-574, gnl\|bosTau2\|chr29 (39494335-39494545)
	364-574, gnl\|canFam2\|chr18 (52816392-52816237)
	364-574, gnl\|danRer3\|chr19 (62724552-62724395)
	364-574, gnl\|echTel1\|scaffold_206206 (15511-15675)
	364-574, gnl\|fr1\|chrUn (51997066-51997237)
	364-574, gnl\|galGal2\|chr5 (35939-36101)
	364-574, gnl\|hg17\|chr11 (67566659-67566823)
	364-574, gnl\|Hg17\|chr11 (67566896-67566686)
	364-574, gnl\|mm7\|chr19 (3798562-3798400)
	364-574, gnl\|Mm7\|chr19 (3798325-3798535)
	364-574, gnl\|monDom2\|scaffold_101 (41358-41554)
	364-574, gnl\|panTro1\|chr9_random (32479219-32479055)
	364-574, gnl\|rheMac2\|chr14 (6678714-6678550)
	364-574, gnl\|rn3\|chr1 (206581972-206581810)
	364-574, gnl\|tetNig1\|chr1 (362490-362313)

	654-803, gnl\|bosTau2\|chr29 (39496069-39496216)
	654-803, gnl\|Hg17\|chr11 (67565431-67565286)
	654-803, gnl\|Mm7\|chr19 (3799391-3799526)