Ss1.1-Liv1-LVR010074D07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGGCGGCGTGTGGGGCCGGCGGGCGGTTGCTGCGAACGGACCCGAGCGCAGGCAGCGA GAGCTGGCGCCATGGTGGAGAAGGAGGAGGCGGGCGGCGGTATCAGCGAGGAGGAGGCGG CGCAGTATGACCGGCAGATCCGTCTCTGGGGACTGGAGGCCCAAAAACGGCTTCGGGCCT CCCGGGTGCTTCTTGTCGGCATGAAGGGACTCGGGGCTGAAATTGCCAAGAATCTCATCC TGGCTGGAGTGAAAGGACTAACCATGCTGGATCATGAACAGGTATCACCAGAAGACCCTG GAGCTCAGTTCCTGATCCGAACTGGGTCTGTTGGCCGAAACAGGGCTGAAGCCTCTTTGG AGCGAGCACAGAATCTCAACCCCATGGTGGATGTGAAGGTGGACACTGAGAATATAGAAA ACAAACCCGAGTCATTTTTCACTCAGTTCGATGCTGTTTGTCTAACTTGCTGCTCCAGGG ATGTCATAGTTAAAGTTGACCAGATCTGTCACAAAAACAGCATCAAATTCTTCACAGGAG ATGTTTTTGGCTACCACGGATACACATTTGCCAATCTTGGAGAGCATGAATTTGTGGAGG AGAAAACCAAAGTTGCCAAAGTTAGTCAAGGAGTAGAAGATGGACCTGATACCAAGAGAG CCAAACTTGATTCATCTGAGACAACCATGGTCAAAAAGAAGGTGGTCTTCTGTTCCGTCA AAGAAGCGCTGGAAGTGGACTGGAGCAGTGACAAAGCAAAGGCAGCTCTGAAGCGCACGA CCTCGGATTACTTTCTCCTTCAAGTGCTTCTGAAGTTCCGCACAGATAAAGGAAGAGATC CAAGTTCTGACACCTTTGGGGAAGACTCTGAGTTGTTGCTCCAGATTCGGAATGATGTGC TCGACTCCCTGGGTGTTAATCCTGACCTGCTTCCCGAGGACTTTGTCAGGTACTGCTTCT CTGAGATGGCCCCAGTGTGTGCAGTGGTTGGAGGGATCCTGGCTCAGGAAATTGTGAAGG CCCTGTCTCAGAGGGACCCTCCTCACAACAACTTTTTCTTCTTTGACGGCATGAAGGGGA GTGGGATTGTGGAGTGCCTCGGCCCCAAGTGAACCCCACACTTGGCGGCCCCAAAGATGC CAACTCGCAGCCCGCCCATACGGGGTCCCCGTCCCCTGTCCCCCGGCAAGGCATCTCCAA GCAGGGCAAATCGAGGTCCTTGAACCAGTATGAACCGTGTCCTGCGAGCAGGGAGGTCCT GCAGATGTGCCCCTTCTCAGCACCAGCAGCTGCCAAACAAGGGGCCTAGGTCCTGGCTGT CTCCCCGCCAGCCCCAGGCCTGCAGCTTGCCTGAGTGGCCAGCACCGGGAAGCCCCCTCT CAGGCCTCTCAGTCCTGGTGTCCTCCTGGCCCCACCAGCCCCCCAGGGATCGCTGGAGGT GCTGGCCGGGAGCCAGCTCACCTTGTTGCACTGGAGCCTCTTGCCACCTTCGTGGACTTA GTCCCCGCCTGCTATCGCACAGAGAAGAGCATGACTTCAGGTGGGGAGTAAGGCCCGGGA CCCATGAAACACTCGTGGAACCACAGTTCCAAATGCAGACAGGTGCCCTTAGAGAGGAAA AACCATAGCAGGTGGAATGTATTTCCTCCAAAGTTTTCAACTCTGAAAAACAACAGGTGG CATCTGGTGTGCTGTTCTTGGGGTTTAGTTTAGGATTAGTTGAGTTCCAGCCAGGCTTTT GGAAGAGAAGAAATGTTACCAAGTCCTCTTGGGTATTAGAATGAGCCCTTGCCAATTGAA TATTAGTGGGAAAGCTTGTAAAAAGGCAGATTCCTGGGTCCCACCCCCCTGGGACTCGGA ACATTGGGATCTAGCTGGGACGGAGGAGCCCTTCGTGGCGCTGCAGGGACGCTTTGGAGG CACAGCACGTGAGGGCTGTGTGTGTCTTTCATCTTCCCCCGAATTGCAGCTGTTTGTGTT TTTTTATATTTTCTATGTTTCCTTGGTTCTTTAAAAAGAAATGATAGAAATAAAGTTATT TGCTTTAGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGGCGGCGTGTGGGGCCGGCGGGCGGTTGCTGCGAACGGACCCGAGCGCAGGCAGCGA GAGCTGGCGCCATGGTGGAGAAGGAGGAGGCGGGCGGCGGTATCAGCGAGGAGGAGGCGG CGCAGTATGACCGGCAGATCCGTCTCTGGGGACTGGAGGCCCAAAAACGGCTTCGGGCCT CCCGGGTGCTTCTTGTCGGCATGAAGGGACTCGGGGCTGAAATTGCCAAGAATCTCATCC TGGCTGGAGTGAAAGGACTAACCATGCTGGATCATGAACAGGTATCACCAGAAGACCCTG GAGCTCAGTTCCTGATCCGAACTGGGTCTGTTGGCCGAAACAGGGCTGAAGCCTCTTTGG AGCGAGCACAGAATCTCAACCCCATGGTGGATGTGAAGGTGGACACTGAGAATATAGAAA ACAAACCCGAGTCATTTTTCACTCAGTTCGATGCTGTTTGTCTAACTTGCTGCTCCAGGG ATGTCATAGTTAAAGTTGACCAGATCTGTCACAAAAACAGCATCAAATTCTTCACAGGAG ATGTTTTTGGCTACCACGGATACACATTTGCCAATCTTGGAGAGCATGAATTTGTGGAGG AGAAAACCAAAGTTGCCAAAGTTAGTCAAGGAGTAGAAGATGGACCTGATACCAAGAGAG CCAAACTTGATTCATCTGAGACAACCATGGTCAAAAAGAAGGTGGTCTTCTGTTCCGTCA AAGAAGCGCTGGAAGTGGACTGGAGCAGTGACAAAGCAAAGGCAGCTCTGAAGCGCACGA CCTCGGATTACTTTCTCCTTCAAGTGCTTCTGAAGTTCCGCACAGATAAAGGAAGAGATC CAAGTTCTGACACCTTTGGGGAAGACTCTGAGTTGTTGCTCCAGATTCGGAATGATGTGC TCGACTCCCTGGGTGTTAATCCTGACCTGCTTCCCGAGGACTTTGTCAGGTACTGCTTCT CTGAGATGGCCCCAGTGTGTGCAGTGGTTGGAGGGATCCTGGCTCAGGAAATTGTGAAGG CCCTGTCTCAGAGGGACCCTCCTCACAACAACTTTTTCTTCTTTGACGGCATGAAGGGGA GTGGGATTGTGGAGTGCCTCGGCCCCAAGTGAACCCCACACTTGGCGGCCCCAAAGATGC CAACTCGCAGCCCGCCCATACGGGGTCCCCGTCCCCTGTCCCCCGGCAAGGCATCTCCAA GCAGGGCAAATCGAGGTCCTTGAACCAGTATGAACCGTGTCCTGCGAGCAGGGAGGTCCT GCAGATGTGCCCCTTCTCAGCACCAGCAGCTGCCAAACAAGGGGCCTAGGTCCTGGCTGT CTCCCCGCCAGCCCCAGGCCTGCAGCTTGCCTGAGTGGCCAGCACCGGGAAGCCCCCTCT CAGGCCTCTCAGTCCTGGTGTCCTCCTGGCCCCACCAGCCCCCCAGGGATCGCTGGAGGT GCTGGCCGGGAGCCAGCTCACCTTGTTGCACTGGAGCCTCTTGCCACCTTCGTGGACTTA GTCCCCGCCTGCTATCGCACAGAGAAGAGCATGACTTCAGGTGGGGAGTAAGGCCCGGGA CCCATGAAACACTCGTGGAACCACAGTTCCAAATGCAGACAGGTGCCCTTAGAGAGGAAA AACCATAGCAGGTGGAATGTATTTCCTCCAAAGTTTTCAACTCTGAAAAACAACAGGTGG CATCTGGTGTGCTGTTCTTGGGGTTTAGTTTAGGATTAGTTGAGTTCCAGCCAGGCTTTT GGAAGAGAAGAAATGTTACCAAGTCCTCTTGGGTATTAGAATGAGCCCTTGCCAATTGAA TATTAGTGGGAAAGCTTGTAAAAAGGCAGATTCCTGGGTCCCACCCCCCTGGGACTCGGA ACATTGGGATCTAGCTGGGACGGAGGAGCCCTTCGTGGCGCTGCAGGGACGCTTTGGAGG CACAGCACGTGAGGGCTGTGTGTGTCTTTCATCTTCCCCCGAATTGCAGCTGTTTGTGTT TTTTTATATTTTCTATGTTTCCTTGGTTCTTTAAAAAGAAATGATAGAAATAAAGTTATT TGCTTTAGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1255-1384, - strand, RNAz p=0.891429 | |
| 1460-1617, - strand, RNAz p=0.999727 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1255-1384, - strand, RNAz p=0.891429 | |
| 1460-1617, - strand, RNAz p=0.999727 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-170, gnl|bosTau2|chr18 (47131929-47132099) | |
| 1-170, gnl|Hg17|chr19 (52325956-52326126) | |
| 1-170, gnl|Mm7|chr7 (14149845-14149683) | |
| 279-457, gnl|bosTau2|chr18 (47150621-47150799) | |
| 279-457, gnl|Hg17|chr19 (52345296-52345474) | |
| 279-457, gnl|Mm7|chr7 (14132506-14132328) | |
| 791-951, gnl|bosTau2|chr18 (47184154-47184316) | |
| 791-951, gnl|canFam2|chr1 (111662683-111662572) | |
| 791-951, gnl|echTel1|scaffold_324803 (9406-9514) | |
| 791-951, gnl|hg17|chr19 (52392287-52392413) | |
| 791-951, gnl|Hg17|chr19 (52392310-52392476) | |
| 791-951, gnl|loxAfr1|scaffold_2274 (9657-9531) | |
| 791-951, gnl|mm7|chr7 (14099271-14099160) | |
| 791-951, gnl|Mm7|chr7 (14099257-14099095) | |
| 791-951, gnl|monDom2|scaffold_149 (1420069-1419942) | |
| 791-951, gnl|oryCun1|scaffold_192306 (42305-42181) | |
| 791-951, gnl|panTro1|chr20 (49699519-49699647) | |
| 791-951, gnl|rheMac2|chr19 (53530283-53530416) | |
| 791-951, gnl|rn3|chr1 (76672380-76672268) | |
| 791-951, gnl|tetNig1|chr16 (6641202-6641305) | |
| 1018-1384, gnl|bosTau2|chr18 (47193191-47193538) | |
| 1018-1384, gnl|Hg17|chr19 (52404254-52404706) | |
| 1433-1890, gnl|bosTau2|chr18 (47193520-47193986) | |
| 1433-1890, gnl|Hg17|chr19 (52404677-52405110) | |
| 1932-2047, gnl|bosTau2|chr18 (47194050-47194169) | |
| 1932-2047, gnl|Hg17|chr19 (52405172-52405285) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-170, gnl|bosTau2|chr18 (47131929-47132099) | |
| 1-170, gnl|Hg17|chr19 (52325956-52326126) | |
| 1-170, gnl|Mm7|chr7 (14149845-14149683) | |
| 279-457, gnl|bosTau2|chr18 (47150621-47150799) | |
| 279-457, gnl|Hg17|chr19 (52345296-52345474) | |
| 279-457, gnl|Mm7|chr7 (14132506-14132328) | |
| 791-951, gnl|bosTau2|chr18 (47184154-47184316) | |
| 791-951, gnl|canFam2|chr1 (111662683-111662572) | |
| 791-951, gnl|echTel1|scaffold_324803 (9406-9514) | |
| 791-951, gnl|hg17|chr19 (52392287-52392413) | |
| 791-951, gnl|Hg17|chr19 (52392310-52392476) | |
| 791-951, gnl|loxAfr1|scaffold_2274 (9657-9531) | |
| 791-951, gnl|mm7|chr7 (14099271-14099160) | |
| 791-951, gnl|Mm7|chr7 (14099257-14099095) | |
| 791-951, gnl|monDom2|scaffold_149 (1420069-1419942) | |
| 791-951, gnl|oryCun1|scaffold_192306 (42305-42181) | |
| 791-951, gnl|panTro1|chr20 (49699519-49699647) | |
| 791-951, gnl|rheMac2|chr19 (53530283-53530416) | |
| 791-951, gnl|rn3|chr1 (76672380-76672268) | |
| 791-951, gnl|tetNig1|chr16 (6641202-6641305) | |
| 1018-1384, gnl|bosTau2|chr18 (47193191-47193538) | |
| 1018-1384, gnl|Hg17|chr19 (52404254-52404706) | |
| 1433-1890, gnl|bosTau2|chr18 (47193520-47193986) | |
| 1433-1890, gnl|Hg17|chr19 (52404677-52405110) | |
| 1932-2047, gnl|bosTau2|chr18 (47194050-47194169) | |
| 1932-2047, gnl|Hg17|chr19 (52405172-52405285) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nep (0.36785) | |
| cje (0.330469) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| cov (0.264306) | |
| eye (0.170503) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nep (0.36785) | |
| cje (0.330469) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| cov (0.264306) | |
| eye (0.170503) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) |