Non-Coding RNA Search

Ss1.1-Liv1-LVR010074E02.5

Sequence:


               
               CTCACCACCATGTTTCTTCTGACTCCAGTCTTGGTAGCCGTTGTCTGCATTTTGATGGTG
TGGATCTTTAAAAATGCTGATGGAGCCACCAAGAGAAGGGAAGAGGAGCCTCGAGCCAGG
GCTGAGGCTCGACCCTGGGTGGATGAAGACTTGAAAGACAGCACTGATGTCCTCCAGGTG
GAGGAAGATGCTGATGAATGGCAAGAGTCAGAGGAAGAGGTGGAACACGTCCCGTTCTCT
CATACCCGCTATCCTGAGAAGGAAATGGTTAGGCGATCCCAGGAGTTTTATGAGCTTCTC
AATAAGAGACGGTCGGTTAGATTCATAAGTAATGAGCGAGTCCCAATGGAAGTCATCGAT
AACGTCATCAAGGCAGCAGGAACAGCCCCAAGTGGGGCCCACACGGAGCCCTGGACTTTT
GTGGTTGTGAAAGACCCGGACGTGAAGCATAGGATTCGGGAAATCATTGAGGAGGAAGAG
GAAATAAACTACCTGAAAAGGATGGGACCTCGATGGGTCACAGACCTGAAGAAACTCAGG
ACCAACTGGATTAAAGAGTACTTGGACACGGCCCCTGTTTTGATTCTCATCTTCAAACAA
GTACATGGTTTTGCTGCAAATGGCAAGAAGAAGATCCACTACTACAATGAGATCAGCGTT
TCCATCGCTTGCGGCATCCTCTTAGCTGCCCTGCAGAACGCAGGGCTGGTGACTGTTACC
ACCACTCCCCTCAACTGTGGCCCCCGACTGAGGGTGCTTCTGAACCGCCCTGCCAATGAA
AAGCTGCTGATGCTTCTCCCGGTGGGGTACCCCAGCAAAGAGGCCACGGTACCCGACCTC
CCCCGGAAACCCCTGGACCAGATCATGGTGACCGTGTAGGCAGGATGTGGGCAGGGAGAT
GCTGGAAGGAGGTGCCCCCTCCCCCGGATCCTGCTCCCCTGGGTATACAGGCTGCTCTTT
CCCTGGGTGTTTGGTCTCCCCAGTGCTCTACTGGGCGGAGGTGGGGGGAGAACTCAAGAA
CTTTGCCGCTGAGAAGCCCTGATTCCCACAGTGGGAATAGCTGGACACACAGGAGAGGTG
AACCAGCAGGTTCTCTTCCATTTCTTATCCACTTTGGAAATGCATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACCACCATGTTTCTTCTGACTCCAGTCTTGGTAGCCGTTGTCTGCATTTTGATGGTG
TGGATCTTTAAAAATGCTGATGGAGCCACCAAGAGAAGGGAAGAGGAGCCTCGAGCCAGG
GCTGAGGCTCGACCCTGGGTGGATGAAGACTTGAAAGACAGCACTGATGTCCTCCAGGTG
GAGGAAGATGCTGATGAATGGCAAGAGTCAGAGGAAGAGGTGGAACACGTCCCGTTCTCT
CATACCCGCTATCCTGAGAAGGAAATGGTTAGGCGATCCCAGGAGTTTTATGAGCTTCTC
AATAAGAGACGGTCGGTTAGATTCATAAGTAATGAGCGAGTCCCAATGGAAGTCATCGAT
AACGTCATCAAGGCAGCAGGAACAGCCCCAAGTGGGGCCCACACGGAGCCCTGGACTTTT
GTGGTTGTGAAAGACCCGGACGTGAAGCATAGGATTCGGGAAATCATTGAGGAGGAAGAG
GAAATAAACTACCTGAAAAGGATGGGACCTCGATGGGTCACAGACCTGAAGAAACTCAGG
ACCAACTGGATTAAAGAGTACTTGGACACGGCCCCTGTTTTGATTCTCATCTTCAAACAA
GTACATGGTTTTGCTGCAAATGGCAAGAAGAAGATCCACTACTACAATGAGATCAGCGTT
TCCATCGCTTGCGGCATCCTCTTAGCTGCCCTGCAGAACGCAGGGCTGGTGACTGTTACC
ACCACTCCCCTCAACTGTGGCCCCCGACTGAGGGTGCTTCTGAACCGCCCTGCCAATGAA
AAGCTGCTGATGCTTCTCCCGGTGGGGTACCCCAGCAAAGAGGCCACGGTACCCGACCTC
CCCCGGAAACCCCTGGACCAGATCATGGTGACCGTGTAGGCAGGATGTGGGCAGGGAGAT
GCTGGAAGGAGGTGCCCCCTCCCCCGGATCCTGCTCCCCTGGGTATACAGGCTGCTCTTT
CCCTGGGTGTTTGGTCTCCCCAGTGCTCTACTGGGCGGAGGTGGGGGGAGAACTCAAGAA
CTTTGCCGCTGAGAAGCCCTGATTCCCACAGTGGGAATAGCTGGACACACAGGAGAGGTG
AACCAGCAGGTTCTCTTCCATTTCTTATCCACTTTGGAAATGCATTAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6TA49_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6TA49_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               731-1128, gnl|bosTau2|chr23 (24967541-24967136)
               

               
               731-1128, gnl|Hg17|chr6 (150811339-150811705)
               

               
               731-1128, gnl|Mm7|chr10 (6791581-6791197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               731-1128, gnl|bosTau2|chr23 (24967541-24967136)
               

               
               731-1128, gnl|Hg17|chr6 (150811339-150811705)
               

               
               731-1128, gnl|Mm7|chr10 (6791581-6791197)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cty (0.10408)

	731-1128, gnl\|bosTau2\|chr23 (24967541-24967136)
	731-1128, gnl\|Hg17\|chr6 (150811339-150811705)
	731-1128, gnl\|Mm7\|chr10 (6791581-6791197)