Non-Coding RNA Search

Ss1.1-Liv1-LVR010076A07.5

Sequence:


               
               ACAGCTGAGGTAACAGAGGCTTAGAGAATATTTTGTCTAAGATCAAGCAGAGAGCAAGTG
GTGGAGGCAGGCTTGCATCTCACTTCCTTTGACTTAAAATTTCACCCATGAAATTGTATC
AAGATCCTCTTGCTTTTGCATTTGTAGGAAGAGACCTACAAAACAAAAAGTAAAGAAAAG
GAGGTTTTCACTTGGAAAATTTGGTGTTTCTTTTTTGCACAACCAGGAAGGCGCTCTGCT
GGGATAAGATTGTGAGACATGGCTGAAGATAAAAGCAAGAGAGGCTCCATTGGAATGAGT
CTGAAGGGCGGCCAGACAAACAATGGGTTTGTCCAAAATGAAGACATCCGGGAGAGGGAC
CCAAACCCAGAGGACCGGCAGCAGCACAATGCCGTGGACATGCTTGGCCCTGGGGATCCG
GACTTGAAGGATATCCGGCCCTACGCGGGGATGCCCAAGGAGGTGCTGTTCCAGTTCTCA
GGCCAGGCACGCTACCGGGTGCCCCGGGAAGTCCTCTTCTGGCTCACAGTGGCTTCTGTG
CTTGCGCTCATCGCAGCCACCATCTCCATCATCGCCATCTCTCCAAAGTGCCTGGACTGG
TGGCAGGCAGGGCCCATGTACCAGATCTACCCAAGGTCTTTCAAGGACAGCGACAAAGAC
GGGAACGGAGATCTGAAAGGTATTCAAGATAAGCTGGATTACCTCACAACTTTAAATATA
AAAACTGTTTGGATTACTTCATTTTATAAGTCATCCCTTAAAGATTTCCGGTATGGTGTT
GAAGATTTCCGAGAAATAGATCCCATTTTTGGAACAATGAAAGATTTTGAGAATCTGGTT
GCAGCCATACATGATAAAGGTTTGAAATTAATAATTGATTTCATACCAAACCACACCAGT
GATAAACATGCTTGGTTTCAGTTGAGTCGGACCCGGACAGGGAAATATACTGATTATTAT
ATCTGGCATGACTGTACCCAGGAAGATGGTATAACTATACCACCCAACAACTGGTTAAGT
GTCTATGGAAACTCCAGTTGGCACTTTGATGAAATACGAAACCAATGCTATTTTCACCAG
TTTTTGAAAGAGCAACCTGATTTAAATTTCCGCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCTGAGGTAACAGAGGCTTAGAGAATATTTTGTCTAAGATCAAGCAGAGAGCAAGTG
GTGGAGGCAGGCTTGCATCTCACTTCCTTTGACTTAAAATTTCACCCATGAAATTGTATC
AAGATCCTCTTGCTTTTGCATTTGTAGGAAGAGACCTACAAAACAAAAAGTAAAGAAAAG
GAGGTTTTCACTTGGAAAATTTGGTGTTTCTTTTTTGCACAACCAGGAAGGCGCTCTGCT
GGGATAAGATTGTGAGACATGGCTGAAGATAAAAGCAAGAGAGGCTCCATTGGAATGAGT
CTGAAGGGCGGCCAGACAAACAATGGGTTTGTCCAAAATGAAGACATCCGGGAGAGGGAC
CCAAACCCAGAGGACCGGCAGCAGCACAATGCCGTGGACATGCTTGGCCCTGGGGATCCG
GACTTGAAGGATATCCGGCCCTACGCGGGGATGCCCAAGGAGGTGCTGTTCCAGTTCTCA
GGCCAGGCACGCTACCGGGTGCCCCGGGAAGTCCTCTTCTGGCTCACAGTGGCTTCTGTG
CTTGCGCTCATCGCAGCCACCATCTCCATCATCGCCATCTCTCCAAAGTGCCTGGACTGG
TGGCAGGCAGGGCCCATGTACCAGATCTACCCAAGGTCTTTCAAGGACAGCGACAAAGAC
GGGAACGGAGATCTGAAAGGTATTCAAGATAAGCTGGATTACCTCACAACTTTAAATATA
AAAACTGTTTGGATTACTTCATTTTATAAGTCATCCCTTAAAGATTTCCGGTATGGTGTT
GAAGATTTCCGAGAAATAGATCCCATTTTTGGAACAATGAAAGATTTTGAGAATCTGGTT
GCAGCCATACATGATAAAGGTTTGAAATTAATAATTGATTTCATACCAAACCACACCAGT
GATAAACATGCTTGGTTTCAGTTGAGTCGGACCCGGACAGGGAAATATACTGATTATTAT
ATCTGGCATGACTGTACCCAGGAAGATGGTATAACTATACCACCCAACAACTGGTTAAGT
GTCTATGGAAACTCCAGTTGGCACTTTGATGAAATACGAAACCAATGCTATTTTCACCAG
TTTTTGAAAGAGCAACCTGATTTAAATTTCCGCAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29260_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29260_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               344-494, - strand, RNAz p=0.996283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-494, - strand, RNAz p=0.996283

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               225-681, gnl|bosTau2|chr11 (13444308-13444773)
               

               
               225-681, gnl|Hg17|chr2 (44414292-44414757)
               

               
               225-681, gnl|Mm7|chr17 (83323246-83323708)
               


               
               858-1020, gnl|bosTau2|chr11 (13448781-13448943)
               

               
               858-1020, gnl|canFam2|chr10 (49832489-49832678)
               

               
               858-1020, gnl|danRer3|chr13 (6893810-6893965)
               

               
               858-1020, gnl|dasNov1|scaffold_115838 (6725-6913)
               

               
               858-1020, gnl|echTel1|scaffold_237265 (7151-7340)
               

               
               858-1020, gnl|fr1|chrUn (141837311-141837478)
               

               
               858-1020, gnl|galGal2|chr3 (21818825-21818990)
               

               
               858-1020, gnl|hg17|chr2 (44420173-44420362)
               

               
               858-1020, gnl|Hg17|chr2 (44420175-44420337)
               

               
               858-1020, gnl|mm7|chr17 (83327603-83327786)
               

               
               858-1020, gnl|Mm7|chr17 (83327605-83327767)
               

               
               858-1020, gnl|monDom2|scaffold_1 (3018541-3018732)
               

               
               858-1020, gnl|panTro1|chr12 (46103783-46103972)
               

               
               858-1020, gnl|rn3|chr6 (8389931-8390112)
               

               
               858-1020, gnl|tetNig1|chr17 (10981352-10981196)
               

               
               858-1020, gnl|xenTro1|scaffold_30 (2581592-2581781)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-681, gnl|bosTau2|chr11 (13444308-13444773)
               

               
               225-681, gnl|Hg17|chr2 (44414292-44414757)
               

               
               225-681, gnl|Mm7|chr17 (83323246-83323708)
               


               
               858-1020, gnl|bosTau2|chr11 (13448781-13448943)
               

               
               858-1020, gnl|canFam2|chr10 (49832489-49832678)
               

               
               858-1020, gnl|danRer3|chr13 (6893810-6893965)
               

               
               858-1020, gnl|dasNov1|scaffold_115838 (6725-6913)
               

               
               858-1020, gnl|echTel1|scaffold_237265 (7151-7340)
               

               
               858-1020, gnl|fr1|chrUn (141837311-141837478)
               

               
               858-1020, gnl|galGal2|chr3 (21818825-21818990)
               

               
               858-1020, gnl|hg17|chr2 (44420173-44420362)
               

               
               858-1020, gnl|Hg17|chr2 (44420175-44420337)
               

               
               858-1020, gnl|mm7|chr17 (83327603-83327786)
               

               
               858-1020, gnl|Mm7|chr17 (83327605-83327767)
               

               
               858-1020, gnl|monDom2|scaffold_1 (3018541-3018732)
               

               
               858-1020, gnl|panTro1|chr12 (46103783-46103972)
               

               
               858-1020, gnl|rn3|chr6 (8389931-8390112)
               

               
               858-1020, gnl|tetNig1|chr17 (10981352-10981196)
               

               
               858-1020, gnl|xenTro1|scaffold_30 (2581592-2581781)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.265569)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)

	225-681, gnl\|bosTau2\|chr11 (13444308-13444773)
	225-681, gnl\|Hg17\|chr2 (44414292-44414757)
	225-681, gnl\|Mm7\|chr17 (83323246-83323708)

	858-1020, gnl\|bosTau2\|chr11 (13448781-13448943)
	858-1020, gnl\|canFam2\|chr10 (49832489-49832678)
	858-1020, gnl\|danRer3\|chr13 (6893810-6893965)
	858-1020, gnl\|dasNov1\|scaffold_115838 (6725-6913)
	858-1020, gnl\|echTel1\|scaffold_237265 (7151-7340)
	858-1020, gnl\|fr1\|chrUn (141837311-141837478)
	858-1020, gnl\|galGal2\|chr3 (21818825-21818990)
	858-1020, gnl\|hg17\|chr2 (44420173-44420362)
	858-1020, gnl\|Hg17\|chr2 (44420175-44420337)
	858-1020, gnl\|mm7\|chr17 (83327603-83327786)
	858-1020, gnl\|Mm7\|chr17 (83327605-83327767)
	858-1020, gnl\|monDom2\|scaffold_1 (3018541-3018732)
	858-1020, gnl\|panTro1\|chr12 (46103783-46103972)
	858-1020, gnl\|rn3\|chr6 (8389931-8390112)
	858-1020, gnl\|tetNig1\|chr17 (10981352-10981196)
	858-1020, gnl\|xenTro1\|scaffold_30 (2581592-2581781)