Ss1.1-Liv1-LVR010076C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGGGTTGACCCGTCAGACCGCGGCAGAGATGGCTCCCACTCAGCTCAGTAACAAAGAG AACTGGGTTGAAATTCAGACTCTGCCTCCCAGTGTGCGACTTTGAGCCGATCCTCATTGC ATCTGAAGCCTCGGTTTTCTTATCTGTAAAATGGGATAGGGGAGGATGTTCAGAGTCTGC GCTCCGGTCCACTTAACCCTGTTGAGCCCATGACCACATTCCCTAGCACCTTTACCGCGT AATTGCGGAGCACGTAAAAGAGGAGATCCAGGCCAGTGTTTTCCACTTGCAGCCGAGGTC CAGGGTCCCCTCGAATCGTGCCTGCGCAGGAAGGTGGATATGCAGCTGCCCCGGGTCACG CAGACGCTGCTGAGCACCTTGGAAGCCGAACTCACGGTGGTGCAGACCCTTCTAACCCAG GGTATGGACCGCCTCTCCCGCCACCTGCGTAGGAGCTCCTCAGGTGCCCGCCTGCGGAAG GAGGTTTACTCATTTGGGGAGATGCCATGGGATCCAGAGCTGATGCAGACCTGCTACCAC GAGGCTGAGCAGAGCCGGGGGCGCCTAGGGCAGCTTACAGCACCATTTGGCTTCTTTGGA ACACAGAGCCTGGTGTTTGGTGCCCAGGATCTCGCACAGCAGCTCATGGCTGATGCCGTG GCCACCTTCCTGCAGCTGGCTGACCAGTATCTGACCACGGCCCTAGACTGTGACCAGGCT GCCCAGCAGCTGGAGAAAGTTGGGGGGCGTGTGCTGAAGAAATTCCGGTCGGATAGTGGC TCGGCACGGAGGAAGTTCATCCATGGCTGGCTGCTCTGCATCTTCTTGCCCTTCGTGTTG AGCCAGCTGGAGCCAAGCTGCAAAGCGGAGCTGCCTGAGTTTGAAGGAGAGGTCCTTGCT ATGGGCAGCCCTGCCCTGACCATTGAAGGCATCTATGAGGATGTCGTCCGGGGTGTCCTG CTGCAAAGGATCAATCAAGAACTGAAAAAGGCCCTCGGTGCCAGCAACGTGTCCTGCACT CTGGATGACTGTTCAGAGGCTCCATGGGACCAGGCAGGAGCAGATGTGGTAACTGAGGCT CAGAGAGGGACTTGCTCCAAGCAACCAGGCTCTGGCACCAAGGTTCAGCCACTCTGCCCA CTGCCTCCTCCAGGGACATTCCAGAGCTGAATCTTGGCCCACATTCATCATCATTCCCAA GGAATAAATGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGGGTTGACCCGTCAGACCGCGGCAGAGATGGCTCCCACTCAGCTCAGTAACAAAGAG AACTGGGTTGAAATTCAGACTCTGCCTCCCAGTGTGCGACTTTGAGCCGATCCTCATTGC ATCTGAAGCCTCGGTTTTCTTATCTGTAAAATGGGATAGGGGAGGATGTTCAGAGTCTGC GCTCCGGTCCACTTAACCCTGTTGAGCCCATGACCACATTCCCTAGCACCTTTACCGCGT AATTGCGGAGCACGTAAAAGAGGAGATCCAGGCCAGTGTTTTCCACTTGCAGCCGAGGTC CAGGGTCCCCTCGAATCGTGCCTGCGCAGGAAGGTGGATATGCAGCTGCCCCGGGTCACG CAGACGCTGCTGAGCACCTTGGAAGCCGAACTCACGGTGGTGCAGACCCTTCTAACCCAG GGTATGGACCGCCTCTCCCGCCACCTGCGTAGGAGCTCCTCAGGTGCCCGCCTGCGGAAG GAGGTTTACTCATTTGGGGAGATGCCATGGGATCCAGAGCTGATGCAGACCTGCTACCAC GAGGCTGAGCAGAGCCGGGGGCGCCTAGGGCAGCTTACAGCACCATTTGGCTTCTTTGGA ACACAGAGCCTGGTGTTTGGTGCCCAGGATCTCGCACAGCAGCTCATGGCTGATGCCGTG GCCACCTTCCTGCAGCTGGCTGACCAGTATCTGACCACGGCCCTAGACTGTGACCAGGCT GCCCAGCAGCTGGAGAAAGTTGGGGGGCGTGTGCTGAAGAAATTCCGGTCGGATAGTGGC TCGGCACGGAGGAAGTTCATCCATGGCTGGCTGCTCTGCATCTTCTTGCCCTTCGTGTTG AGCCAGCTGGAGCCAAGCTGCAAAGCGGAGCTGCCTGAGTTTGAAGGAGAGGTCCTTGCT ATGGGCAGCCCTGCCCTGACCATTGAAGGCATCTATGAGGATGTCGTCCGGGGTGTCCTG CTGCAAAGGATCAATCAAGAACTGAAAAAGGCCCTCGGTGCCAGCAACGTGTCCTGCACT CTGGATGACTGTTCAGAGGCTCCATGGGACCAGGCAGGAGCAGATGTGGTAACTGAGGCT CAGAGAGGGACTTGCTCCAAGCAACCAGGCTCTGGCACCAAGGTTCAGCCACTCTGCCCA CTGCCTCCTCCAGGGACATTCCAGAGCTGAATCTTGGCCCACATTCATCATCATTCCCAA GGAATAAATGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 761-1212, - strand, RNAz p=0.849959 | |
| 1095-1212, - strand, RNAz p=0.625277 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 761-1212, - strand, RNAz p=0.849959 | |
| 1095-1212, - strand, RNAz p=0.625277 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-485, gnl|bosTau2|chr7 (4856656-4856176) | |
| 1-485, gnl|Hg17|chr19 (17511974-17512393) | |
| 1-485, gnl|Mm7|chr8 (70070527-70070990) | |
| 738-868, gnl|bosTau2|chr7 (4853015-4852885) | |
| 738-868, gnl|canFam2|chr20 (48283648-48283243) | |
| 738-868, gnl|echTel1|scaffold_225222 (5050-4669) | |
| 738-868, gnl|hg17|chr19 (17515082-17515492) | |
| 738-868, gnl|Hg17|chr19 (17515311-17515441) | |
| 738-868, gnl|loxAfr1|scaffold_18018 (30341-29951) | |
| 738-868, gnl|mm7|chr8 (70071865-70072229) | |
| 738-868, gnl|Mm7|chr8 (70072068-70072197) | |
| 738-868, gnl|panTro1|chr20_random (4761398-4760988) | |
| 738-868, gnl|rheMac2|chr19 (17101436-17101854) | |
| 738-868, gnl|rn3|chr16 (18805565-18805919) | |
| 1061-1212, gnl|bosTau2|chr7 (4847974-4847823) | |
| 1061-1212, gnl|canFam2|chr20 (48279129-48278917) | |
| 1061-1212, gnl|hg17|chr19 (17523577-17523787) | |
| 1061-1212, gnl|Hg17|chr19 (17523592-17523748) | |
| 1061-1212, gnl|mm7|chr8 (70074693-70074903) | |
| 1061-1212, gnl|panTro1|chr20 (18513329-18513539) | |
| 1061-1212, gnl|rheMac2|chr19 (17109527-17109737) | |
| 1061-1212, gnl|rn3|chr16 (18808918-18809097) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-485, gnl|bosTau2|chr7 (4856656-4856176) | |
| 1-485, gnl|Hg17|chr19 (17511974-17512393) | |
| 1-485, gnl|Mm7|chr8 (70070527-70070990) | |
| 738-868, gnl|bosTau2|chr7 (4853015-4852885) | |
| 738-868, gnl|canFam2|chr20 (48283648-48283243) | |
| 738-868, gnl|echTel1|scaffold_225222 (5050-4669) | |
| 738-868, gnl|hg17|chr19 (17515082-17515492) | |
| 738-868, gnl|Hg17|chr19 (17515311-17515441) | |
| 738-868, gnl|loxAfr1|scaffold_18018 (30341-29951) | |
| 738-868, gnl|mm7|chr8 (70071865-70072229) | |
| 738-868, gnl|Mm7|chr8 (70072068-70072197) | |
| 738-868, gnl|panTro1|chr20_random (4761398-4760988) | |
| 738-868, gnl|rheMac2|chr19 (17101436-17101854) | |
| 738-868, gnl|rn3|chr16 (18805565-18805919) | |
| 1061-1212, gnl|bosTau2|chr7 (4847974-4847823) | |
| 1061-1212, gnl|canFam2|chr20 (48279129-48278917) | |
| 1061-1212, gnl|hg17|chr19 (17523577-17523787) | |
| 1061-1212, gnl|Hg17|chr19 (17523592-17523748) | |
| 1061-1212, gnl|mm7|chr8 (70074693-70074903) | |
| 1061-1212, gnl|panTro1|chr20 (18513329-18513539) | |
| 1061-1212, gnl|rheMac2|chr19 (17109527-17109737) | |
| 1061-1212, gnl|rn3|chr16 (18808918-18809097) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) | |
| cov (0.132153) | |
| cly (0.120642) |