Non-Coding RNA Search

Ss1.1-Liv1-LVR010076G01.5

Sequence:


               
               AGGTTTGGTCCCGATTTGCATGCTTGGCGGGTACCGAGGTCCGCCACGGCCAAGCTGCCA
GGGTACCTCTTGATATCTTGGCAAGGGTTTCTTTACGCTGTGGCACTCGTGCCTTTGGGG
GCTTTGTGTCTGTGTGCAACTGTATAGCTAGCAGCTAGGGGACCCTCGCCTCCCAGCTCC
TCGTTCTCTCAGCTCGTTCGTCGCAGCCCAGCAGCTAGACGCGCGTCAGCTGCTCAAGGG
ATGGAGCAAACCGAGGTGCTCAAGCCACGCACCCTGGCGGATCTGATCCGCATACTGCAC
CAGCTCTTCGCCAGCGAAGAGGTCAACGTGGAGGAGGTGCAGGCAGTCATGGAAGCCTAT
GAGAGCGACCCCGCGGAGTGGGCCATGTACGCCAAGTTCGACCAGTACAGGTACACCCGA
AATCTTGTGGATCAAGGAAATGGAAAATTTAATCTAATGATTCTATGTTGGGGTGAAGGA
CATGGCAGCAGTATCCATGATCACACCGACTCCCACTGCTTTCTGAAGATGCTGCAAGGA
AATCTAAAGGAGACATTATTTGCCTGGCCTGACAAAAAATCCAACGAGATGATCAAGAAG
TCTGAAAGAATCTTGAGGGAAAACCAGTGTGCCTACATCAACGATTCCATTGGCTTACAT
CGAGTAGAGAATATGAGTCACACAGAACCTGCTGTGAGCCTTCACTTGTACAGTCCACCC
TTCGATACGTGCCATGCCTTTGATCAAAGAACAGGACATAAAAACAAAGTCACCATGACA
TTCCATAGCAAATTTGGAATCAGGACTCCACTTGCAACTTCAGGGTCCCTGGAGAACAAC
TAAGGAGCACCAAACCCTCTGGATGTTTTACTTCAAGGTCTGGTGAAAGTTTTGCCATGG
ATGGGAAGGCTTCCCACCATTTTCTTTCCAGTAATACACTTTACAAAGCCAATATTTAGA
TCTACTATAAGGCAGATGCTAATTATAAGGCATTAAGTAAGCAAATAGTGCCCTGAGCTA
CTATAGAAGAAAAAAACTCCCACTAAGGATAAAAAGGCTTGTGATTTTAAAGGCCAGCTC
AAGGGCTCTACTGGTTTCACCCTCTAAATCCATTGGTACCATCTGGAGAGTATCAACAAA
GGTTTTTATAGTTTTTGGAAATCCTTTGGTCTCTGAACTGTAATTAGGAATAAATAAAAA
CAAGACATCAAACCACCCACCTTGTTACTTCGAGAACTAAATGTAGGTGTCTTCAGTATA
CTTTGTACGTTCTTAATGTTGGAAGAGAATTTTTTGAATCCGTGCATTTTATTTTTTCAA
TCTTATTTTACAAATTCCTGTTCTATAAATAATAGGGTATTGTAGATAGAGAAAGTTAAG
GCACTTGGCCATTTGATAATGAAATGAAGGGCAGGAGCTTTAGAAAAGTACATGTATCCA
AACCCACAACAAACCAAAAATATAAATTCATTCTAATGTGTCCAGTGGTCAAAGACTTTG
TACTGCTGCCAAAATTGCCAAATCATTTTAATAAAACTGGATTTGAACATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTTGGTCCCGATTTGCATGCTTGGCGGGTACCGAGGTCCGCCACGGCCAAGCTGCCA
GGGTACCTCTTGATATCTTGGCAAGGGTTTCTTTACGCTGTGGCACTCGTGCCTTTGGGG
GCTTTGTGTCTGTGTGCAACTGTATAGCTAGCAGCTAGGGGACCCTCGCCTCCCAGCTCC
TCGTTCTCTCAGCTCGTTCGTCGCAGCCCAGCAGCTAGACGCGCGTCAGCTGCTCAAGGG
ATGGAGCAAACCGAGGTGCTCAAGCCACGCACCCTGGCGGATCTGATCCGCATACTGCAC
CAGCTCTTCGCCAGCGAAGAGGTCAACGTGGAGGAGGTGCAGGCAGTCATGGAAGCCTAT
GAGAGCGACCCCGCGGAGTGGGCCATGTACGCCAAGTTCGACCAGTACAGGTACACCCGA
AATCTTGTGGATCAAGGAAATGGAAAATTTAATCTAATGATTCTATGTTGGGGTGAAGGA
CATGGCAGCAGTATCCATGATCACACCGACTCCCACTGCTTTCTGAAGATGCTGCAAGGA
AATCTAAAGGAGACATTATTTGCCTGGCCTGACAAAAAATCCAACGAGATGATCAAGAAG
TCTGAAAGAATCTTGAGGGAAAACCAGTGTGCCTACATCAACGATTCCATTGGCTTACAT
CGAGTAGAGAATATGAGTCACACAGAACCTGCTGTGAGCCTTCACTTGTACAGTCCACCC
TTCGATACGTGCCATGCCTTTGATCAAAGAACAGGACATAAAAACAAAGTCACCATGACA
TTCCATAGCAAATTTGGAATCAGGACTCCACTTGCAACTTCAGGGTCCCTGGAGAACAAC
TAAGGAGCACCAAACCCTCTGGATGTTTTACTTCAAGGTCTGGTGAAAGTTTTGCCATGG
ATGGGAAGGCTTCCCACCATTTTCTTTCCAGTAATACACTTTACAAAGCCAATATTTAGA
TCTACTATAAGGCAGATGCTAATTATAAGGCATTAAGTAAGCAAATAGTGCCCTGAGCTA
CTATAGAAGAAAAAAACTCCCACTAAGGATAAAAAGGCTTGTGATTTTAAAGGCCAGCTC
AAGGGCTCTACTGGTTTCACCCTCTAAATCCATTGGTACCATCTGGAGAGTATCAACAAA
GGTTTTTATAGTTTTTGGAAATCCTTTGGTCTCTGAACTGTAATTAGGAATAAATAAAAA
CAAGACATCAAACCACCCACCTTGTTACTTCGAGAACTAAATGTAGGTGTCTTCAGTATA
CTTTGTACGTTCTTAATGTTGGAAGAGAATTTTTTGAATCCGTGCATTTTATTTTTTCAA
TCTTATTTTACAAATTCCTGTTCTATAAATAATAGGGTATTGTAGATAGAGAAAGTTAAG
GCACTTGGCCATTTGATAATGAAATGAAGGGCAGGAGCTTTAGAAAAGTACATGTATCCA
AACCCACAACAAACCAAAAATATAAATTCATTCTAATGTGTCCAGTGGTCAAAGACTTTG
TACTGCTGCCAAAATTGCCAAATCATTTTAATAAAACTGGATTTGAACATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55728106|emb|CAH90803.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55728106|emb|CAH90803.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               74-179, + strand, RNAz p=0.758984

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-179, + strand, RNAz p=0.758984

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               74-412, gnl|bosTau2|chr14 (12587928-12587586)
               

               
               74-412, gnl|Hg17|chr5 (115180174-115179822)
               

               
               74-412, gnl|Mm7|chr18 (47105786-47105459)
               


               
               449-650, gnl|bosTau2|chr14 (12583343-12583142)
               

               
               449-650, gnl|Hg17|chr5 (115174951-115174750)
               

               
               449-650, gnl|Mm7|chr18 (47097969-47097768)
               


               
               815-1552, gnl|bosTau2|chr14 (12577169-12576445)
               

               
               815-1552, gnl|Hg17|chr5 (115169057-115168329)
               

               
               815-1552, gnl|Mm7|chr18 (47091448-47090693)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-412, gnl|bosTau2|chr14 (12587928-12587586)
               

               
               74-412, gnl|Hg17|chr5 (115180174-115179822)
               

               
               74-412, gnl|Mm7|chr18 (47105786-47105459)
               


               
               449-650, gnl|bosTau2|chr14 (12583343-12583142)
               

               
               449-650, gnl|Hg17|chr5 (115174951-115174750)
               

               
               449-650, gnl|Mm7|chr18 (47097969-47097768)
               


               
               815-1552, gnl|bosTau2|chr14 (12577169-12576445)
               

               
               815-1552, gnl|Hg17|chr5 (115169057-115168329)
               

               
               815-1552, gnl|Mm7|chr18 (47091448-47090693)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               lun (1.50489)
               

               
               bfe (0.449573)
               

               
               ese (0.379507)
               

               
               fco (0.314416)
               

               
               ldo (0.291008)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.50489)
               

               
               bfe (0.449573)
               

               
               ese (0.379507)
               

               
               fco (0.314416)
               

               
               ldo (0.291008)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	74-412, gnl\|bosTau2\|chr14 (12587928-12587586)
	74-412, gnl\|Hg17\|chr5 (115180174-115179822)
	74-412, gnl\|Mm7\|chr18 (47105786-47105459)

	449-650, gnl\|bosTau2\|chr14 (12583343-12583142)
	449-650, gnl\|Hg17\|chr5 (115174951-115174750)
	449-650, gnl\|Mm7\|chr18 (47097969-47097768)

	815-1552, gnl\|bosTau2\|chr14 (12577169-12576445)
	815-1552, gnl\|Hg17\|chr5 (115169057-115168329)
	815-1552, gnl\|Mm7\|chr18 (47091448-47090693)

	lun (1.50489)
	bfe (0.449573)
	ese (0.379507)
	fco (0.314416)
	ldo (0.291008)
	ret (0.257467)
	sug (0.254582)
	mgp (0.230681)
	ece (0.229305)
	spc (0.226732)
	mas (0.210305)
	tes (0.207814)
	aor (0.195274)
	rec (0.17307)
	mcp (0.170648)
	eli (0.151814)
	pty (0.142714)
	cst (0.140036)
	ste (0.135208)
	tra (0.123092)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)