Ss1.1-Liv1-LVR010076G05.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTCCGGCCGGCCGGCCTTGGGCTCAGCACCCTAAGCCACCCGAGCAGCACCCTGCTAGG TTCTCATGGCGAACCTGAGCCCCTCGCAGCTCCAGAAGTTCCAGGAGGATGGATTCCTGG TGCTGGAAGGATTCTTGTCTGCAGCCGAGTGTGTGGCCATGCAGCAGAGGATTGGCGAGC TTGTGGCCGAGATGGATGTCCCTCGCCACTGCCGCACGGAATTTTCCACCCAGGAGGAGG AGCAGCTACGAGCCCAGGGCAGCACAGACTACTTCCTGAGCAGCGGTGACAAGATCCGAT TCTTCTTTGAGAAGGGTGTCTTTGATGAGAAAGGCAATTTCCTGGTCCCTCCGGAGAAAG CCATCAACAAAATCGGCCATGCTTTGCACGCCCATGACCCTGTCTTCAGGTGCATCACTC ACTCGCCCAAGGTGCAGGCCTTGGCCAGGAGTCTGGGCCTCCAGATGCCCGTGGTGGTGC AGAGCATGTATATCTTTAAGCAACCTCACTTTGGTGGCGAAGTCTCCCCTCACCAGGACG CCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCATGTGGATGGCACTGGAGG ATGCCACGCTGGAGAACGGCTGCCTCTGGTTCATCCCCGGCTCCCACACAGGTGGGGTGT CGAGAAGGATGGTCCGGGCCCCTGCTGGCTCGGCCCCGGGCACCAGCTTCCTTGGGTCTG AGCCAGCTCGGGATAACAACCTCTTTGTGCCCACACCAGTGCGGAGAGGGGCCCTCGTCC TGATCCACGGAGAAGTGGTGCACAAAAGCGAGCAGAACCTCTCCGACCGCTCTCGCCAGG CCTACACGTTCCACCTCATGGACGCCGCTGACACCGTGTGGAGCCCGGAGAACTGGCTCC AGCCCACAGCCGAGCTCCCCTTTCCCCCGCTGTACACCTAAAGCCTCTCAGGGCAGGGCC GCTGCCCCCTCCCGGGTGAAGCCAGGGGCCACCAGCACCAACGCCTCGCCTGCCCGCCCG GCTGTGGCGGGGAAGCCGCACCTCTCGTCCTGGGCTTTCCTTCTGCCTGCGTCTGAAGAG CCTGGGCCGAGTGCCTTTCCTGAGGTCTCTGTCTCTGCCTCTCCTGGCCCAACACAGCCT CCCCTGGAGGCAGCCTGTCGGCCAGGAAAGGGTTCTGGCTGCTTCTCTGCCGGCTTCTCG TGGCTCTTCCCTCTCAGATGGAACTGCTGCTCATGACCGTGCAAGACGGGAATAAAAACA ACTTCCGAATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTCCGGCCGGCCGGCCTTGGGCTCAGCACCCTAAGCCACCCGAGCAGCACCCTGCTAGG TTCTCATGGCGAACCTGAGCCCCTCGCAGCTCCAGAAGTTCCAGGAGGATGGATTCCTGG TGCTGGAAGGATTCTTGTCTGCAGCCGAGTGTGTGGCCATGCAGCAGAGGATTGGCGAGC TTGTGGCCGAGATGGATGTCCCTCGCCACTGCCGCACGGAATTTTCCACCCAGGAGGAGG AGCAGCTACGAGCCCAGGGCAGCACAGACTACTTCCTGAGCAGCGGTGACAAGATCCGAT TCTTCTTTGAGAAGGGTGTCTTTGATGAGAAAGGCAATTTCCTGGTCCCTCCGGAGAAAG CCATCAACAAAATCGGCCATGCTTTGCACGCCCATGACCCTGTCTTCAGGTGCATCACTC ACTCGCCCAAGGTGCAGGCCTTGGCCAGGAGTCTGGGCCTCCAGATGCCCGTGGTGGTGC AGAGCATGTATATCTTTAAGCAACCTCACTTTGGTGGCGAAGTCTCCCCTCACCAGGACG CCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCATGTGGATGGCACTGGAGG ATGCCACGCTGGAGAACGGCTGCCTCTGGTTCATCCCCGGCTCCCACACAGGTGGGGTGT CGAGAAGGATGGTCCGGGCCCCTGCTGGCTCGGCCCCGGGCACCAGCTTCCTTGGGTCTG AGCCAGCTCGGGATAACAACCTCTTTGTGCCCACACCAGTGCGGAGAGGGGCCCTCGTCC TGATCCACGGAGAAGTGGTGCACAAAAGCGAGCAGAACCTCTCCGACCGCTCTCGCCAGG CCTACACGTTCCACCTCATGGACGCCGCTGACACCGTGTGGAGCCCGGAGAACTGGCTCC AGCCCACAGCCGAGCTCCCCTTTCCCCCGCTGTACACCTAAAGCCTCTCAGGGCAGGGCC GCTGCCCCCTCCCGGGTGAAGCCAGGGGCCACCAGCACCAACGCCTCGCCTGCCCGCCCG GCTGTGGCGGGGAAGCCGCACCTCTCGTCCTGGGCTTTCCTTCTGCCTGCGTCTGAAGAG CCTGGGCCGAGTGCCTTTCCTGAGGTCTCTGTCTCTGCCTCTCCTGGCCCAACACAGCCT CCCCTGGAGGCAGCCTGTCGGCCAGGAAAGGGTTCTGGCTGCTTCTCTGCCGGCTTCTCG TGGCTCTTCCCTCTCAGATGGAACTGCTGCTCATGACCGTGCAAGACGGGAATAAAAACA ACTTCCGAATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1076-1222, - strand, RNAz p=0.953738 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1076-1222, - strand, RNAz p=0.953738 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 68-258, gnl|bosTau2|chr11 (78752063-78752257) | |
| 68-258, gnl|Hg17|chr9 (128768842-128769030) | |
| 68-258, gnl|Mm7|chr2 (30276971-30277159) | |
| 521-657, gnl|bosTau2|chr11 (78759594-78759730) | |
| 521-657, gnl|canFam2|chr9 (58063467-58063327) | |
| 521-657, gnl|danRer3|chr21 (791146-791010) | |
| 521-657, gnl|echTel1|scaffold_316532 (61682-61540) | |
| 521-657, gnl|fr1|chrUn (59168880-59168742) | |
| 521-657, gnl|galGal2|chr17 (5429066-5428928) | |
| 521-657, gnl|hg17|chr9 (128782198-128782337) | |
| 521-657, gnl|Hg17|chr9 (128782200-128782336) | |
| 521-657, gnl|mm7|chr2 (30287263-30287401) | |
| 521-657, gnl|Mm7|chr2 (30287264-30287400) | |
| 521-657, gnl|monDom2|scaffold_51 (3537024-3537163) | |
| 521-657, gnl|panTro1|chr11_random (6907519-6907380) | |
| 521-657, gnl|rheMac2|chr15 (9917463-9917323) | |
| 521-657, gnl|rn3|chr3 (9323734-9323874) | |
| 521-657, gnl|tetNig1|chr4 (4171315-4171178) | |
| 521-657, gnl|xenTro1|scaffold_82 (470318-470180) | |
| 767-896, gnl|bosTau2|chr11 (78761012-78761141) | |
| 767-896, gnl|canFam2|chr9 (58062274-58062129) | |
| 767-896, gnl|danRer3|chr21 (787288-787146) | |
| 767-896, gnl|dasNov1|scaffold_8180 (48652-48798) | |
| 767-896, gnl|echTel1|scaffold_316532 (60503-60357) | |
| 767-896, gnl|fr1|chrUn (59167947-59167808) | |
| 767-896, gnl|galGal2|chr17 (5428038-5427890) | |
| 767-896, gnl|hg17|chr9 (128783264-128783410) | |
| 767-896, gnl|Hg17|chr9 (128783276-128783405) | |
| 767-896, gnl|mm7|chr2 (30288297-30288453) | |
| 767-896, gnl|Mm7|chr2 (30288319-30288448) | |
| 767-896, gnl|monDom2|scaffold_51 (3537691-3537834) | |
| 767-896, gnl|oryCun1|scaffold_193234 (803-655) | |
| 767-896, gnl|panTro1|chr11_random (6906452-6906306) | |
| 767-896, gnl|rheMac2|chr15 (9916406-9916260) | |
| 767-896, gnl|rn3|chr3 (9324802-9324958) | |
| 767-896, gnl|tetNig1|chr4 (4170256-4170136) | |
| 767-896, gnl|xenTro1|scaffold_82 (468693-468540) | |
| 1065-1272, gnl|bosTau2|chr11 (78761456-78761663) | |
| 1065-1272, gnl|canFam2|chr9 (58061843-58061587) | |
| 1065-1272, gnl|dasNov1|scaffold_8180 (49065-49310) | |
| 1065-1272, gnl|echTel1|scaffold_316532 (60105-59980) | |
| 1065-1272, gnl|hg17|chr9 (128783668-128783863) | |
| 1065-1272, gnl|Hg17|chr9 (128783674-128783870) | |
| 1065-1272, gnl|mm7|chr2 (30289223-30289452) | |
| 1065-1272, gnl|Mm7|chr2 (30289276-30289451) | |
| 1065-1272, gnl|oryCun1|scaffold_193234 (383-179) | |
| 1065-1272, gnl|panTro1|chr11_random (6906048-6905853) | |
| 1065-1272, gnl|rheMac2|chr15 (9916004-9915809) | |
| 1065-1272, gnl|rn3|chr3 (9325676-9325895) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-258, gnl|bosTau2|chr11 (78752063-78752257) | |
| 68-258, gnl|Hg17|chr9 (128768842-128769030) | |
| 68-258, gnl|Mm7|chr2 (30276971-30277159) | |
| 521-657, gnl|bosTau2|chr11 (78759594-78759730) | |
| 521-657, gnl|canFam2|chr9 (58063467-58063327) | |
| 521-657, gnl|danRer3|chr21 (791146-791010) | |
| 521-657, gnl|echTel1|scaffold_316532 (61682-61540) | |
| 521-657, gnl|fr1|chrUn (59168880-59168742) | |
| 521-657, gnl|galGal2|chr17 (5429066-5428928) | |
| 521-657, gnl|hg17|chr9 (128782198-128782337) | |
| 521-657, gnl|Hg17|chr9 (128782200-128782336) | |
| 521-657, gnl|mm7|chr2 (30287263-30287401) | |
| 521-657, gnl|Mm7|chr2 (30287264-30287400) | |
| 521-657, gnl|monDom2|scaffold_51 (3537024-3537163) | |
| 521-657, gnl|panTro1|chr11_random (6907519-6907380) | |
| 521-657, gnl|rheMac2|chr15 (9917463-9917323) | |
| 521-657, gnl|rn3|chr3 (9323734-9323874) | |
| 521-657, gnl|tetNig1|chr4 (4171315-4171178) | |
| 521-657, gnl|xenTro1|scaffold_82 (470318-470180) | |
| 767-896, gnl|bosTau2|chr11 (78761012-78761141) | |
| 767-896, gnl|canFam2|chr9 (58062274-58062129) | |
| 767-896, gnl|danRer3|chr21 (787288-787146) | |
| 767-896, gnl|dasNov1|scaffold_8180 (48652-48798) | |
| 767-896, gnl|echTel1|scaffold_316532 (60503-60357) | |
| 767-896, gnl|fr1|chrUn (59167947-59167808) | |
| 767-896, gnl|galGal2|chr17 (5428038-5427890) | |
| 767-896, gnl|hg17|chr9 (128783264-128783410) | |
| 767-896, gnl|Hg17|chr9 (128783276-128783405) | |
| 767-896, gnl|mm7|chr2 (30288297-30288453) | |
| 767-896, gnl|Mm7|chr2 (30288319-30288448) | |
| 767-896, gnl|monDom2|scaffold_51 (3537691-3537834) | |
| 767-896, gnl|oryCun1|scaffold_193234 (803-655) | |
| 767-896, gnl|panTro1|chr11_random (6906452-6906306) | |
| 767-896, gnl|rheMac2|chr15 (9916406-9916260) | |
| 767-896, gnl|rn3|chr3 (9324802-9324958) | |
| 767-896, gnl|tetNig1|chr4 (4170256-4170136) | |
| 767-896, gnl|xenTro1|scaffold_82 (468693-468540) | |
| 1065-1272, gnl|bosTau2|chr11 (78761456-78761663) | |
| 1065-1272, gnl|canFam2|chr9 (58061843-58061587) | |
| 1065-1272, gnl|dasNov1|scaffold_8180 (49065-49310) | |
| 1065-1272, gnl|echTel1|scaffold_316532 (60105-59980) | |
| 1065-1272, gnl|hg17|chr9 (128783668-128783863) | |
| 1065-1272, gnl|Hg17|chr9 (128783674-128783870) | |
| 1065-1272, gnl|mm7|chr2 (30289223-30289452) | |
| 1065-1272, gnl|Mm7|chr2 (30289276-30289451) | |
| 1065-1272, gnl|oryCun1|scaffold_193234 (383-179) | |
| 1065-1272, gnl|panTro1|chr11_random (6906048-6905853) | |
| 1065-1272, gnl|rheMac2|chr15 (9916004-9915809) | |
| 1065-1272, gnl|rn3|chr3 (9325676-9325895) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (0.305623) | |
| che (0.136314) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.305623) | |
| che (0.136314) | |
| cov (0.132153) | |
| cty (0.10408) |