Ss1.1-Liv1-LVR010077H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCTGGCGCACCTCCTGAGACAGCGCCTGGGGGTCAGGTTGGGCCTCTTCCTCCGCACC ATCCGCAAAGGTGCTGGCAAAGGTGCTGAGCTCCTCACGCAGATGGTCCAAGTTTTTCTG AATGTGCGCGTGCAGGGCCTTGGCCTTGAGCGTGAGCTTGTGCGAGAGCATCTGCACGCA GCGGCTGAGGCGCGCGGGGCTGGCAGCGGCATGTGGTGCCACGCTGCGGTGCAGCTCCTG CACGTGGTGCCCAATGCCGGTCACCAGGCGCTCGGCATAGGGGTGGAAGAGCGCCTTGAC GCGGCTGGTGTGGTGCACCACGCGGTTCTGCAGCTCCTGCAGCAGGCCCCGCGCCTCCTC CACACCCCCCAGCAGCTGGGCCTTGGTGTCCTCTCCGACCACGCGCAGCTGCTCCTGCAG GTCCTGCACACGCAGGGCCACCTGCTCCATCAGCTCTGTCGTGTAGGGCTGCAGCTGCTG CCGCAAGCCCTCCAGATTCCAGCTCACGCGCTCATGCATCTCCGTCATGTAGGGCTCCAG GCGCTTCCTCACCTCCTCCAGCTCCTTCTGCAGCTGCTGCCGCATGCCCACTGGGTCTTG TGGGAGCCCATTCAGGGGACCCAGCTTTTCCAGGAACTTGTCCATATTGTTGAGGTTTTG CTCAAGGCTGTCTTTCAGTCTCGTGGGCTCCTGTGCCAGCTTCTGCTGCTGGATCTGCTC CACCCTGCCTTTGTTCCCGCTGCTCTGGCTGAAGTAGTCCCAGAAGCCTTTCCCTGCCTG GGTGGTTGAAAGCCCTGAGAGGAGGGCCAGCACCCAGGTCAGAACTACAGCCACGCTTGC CATGATGTGCTCTGAAAAGAAAGGCAAGTGGAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCTGGCGCACCTCCTGAGACAGCGCCTGGGGGTCAGGTTGGGCCTCTTCCTCCGCACC ATCCGCAAAGGTGCTGGCAAAGGTGCTGAGCTCCTCACGCAGATGGTCCAAGTTTTTCTG AATGTGCGCGTGCAGGGCCTTGGCCTTGAGCGTGAGCTTGTGCGAGAGCATCTGCACGCA GCGGCTGAGGCGCGCGGGGCTGGCAGCGGCATGTGGTGCCACGCTGCGGTGCAGCTCCTG CACGTGGTGCCCAATGCCGGTCACCAGGCGCTCGGCATAGGGGTGGAAGAGCGCCTTGAC GCGGCTGGTGTGGTGCACCACGCGGTTCTGCAGCTCCTGCAGCAGGCCCCGCGCCTCCTC CACACCCCCCAGCAGCTGGGCCTTGGTGTCCTCTCCGACCACGCGCAGCTGCTCCTGCAG GTCCTGCACACGCAGGGCCACCTGCTCCATCAGCTCTGTCGTGTAGGGCTGCAGCTGCTG CCGCAAGCCCTCCAGATTCCAGCTCACGCGCTCATGCATCTCCGTCATGTAGGGCTCCAG GCGCTTCCTCACCTCCTCCAGCTCCTTCTGCAGCTGCTGCCGCATGCCCACTGGGTCTTG TGGGAGCCCATTCAGGGGACCCAGCTTTTCCAGGAACTTGTCCATATTGTTGAGGTTTTG CTCAAGGCTGTCTTTCAGTCTCGTGGGCTCCTGTGCCAGCTTCTGCTGCTGGATCTGCTC CACCCTGCCTTTGTTCCCGCTGCTCTGGCTGAAGTAGTCCCAGAAGCCTTTCCCTGCCTG GGTGGTTGAAAGCCCTGAGAGGAGGGCCAGCACCCAGGTCAGAACTACAGCCACGCTTGC CATGATGTGCTCTGAAAAGAAAGGCAAGTGGAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 61-171, - strand, RNAz p=0.506207 | |
| 80-316, - strand, RNAz p=0.698983 | |
| 357-516, - strand, RNAz p=0.91046 | |
| 367-485, + strand, RNAz p=0.725394 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 61-171, - strand, RNAz p=0.506207 | |
| 80-316, - strand, RNAz p=0.698983 | |
| 357-516, - strand, RNAz p=0.91046 | |
| 367-485, + strand, RNAz p=0.725394 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-608, gnl|bosTau2|chr15 (13267350-13266743) | |
| 1-608, gnl|canFam2|chr5 (19782111-19781211) | |
| 1-608, gnl|dasNov1|scaffold_106384 (1464-564) | |
| 1-608, gnl|echTel1|scaffold_96979 (2190-3090) | |
| 1-608, gnl|galGal2|chr24_random (115780-116618) | |
| 1-608, gnl|hg17|chr11 (116166139-116167027) | |
| 1-608, gnl|Hg17|chr11 (116166303-116166904) | |
| 1-608, gnl|loxAfr1|scaffold_12853 (15344-14446) | |
| 1-608, gnl|mm7|chr9 (46228763-46227859) | |
| 1-608, gnl|Mm7|chr9 (46228597-46227990) | |
| 1-608, gnl|monDom2|scaffold_2 (122545526-122544623) | |
| 1-608, gnl|oryCun1|scaffold_151681 (3646-2746) | |
| 1-608, gnl|panTro1|chr9 (118165973-118166861) | |
| 1-608, gnl|rheMac2|chr14 (115187528-115188416) | |
| 1-608, gnl|rn3|chr8 (49266818-49265916) | |
| 676-805, gnl|bosTau2|chr15 (13265952-13265829) | |
| 676-805, gnl|canFam2|chr5 (19780725-19780576) | |
| 676-805, gnl|dasNov1|scaffold_106384 (125-4) | |
| 676-805, gnl|echTel1|scaffold_96979 (3550-3697) | |
| 676-805, gnl|galGal2|chr24_random (116701-116853) | |
| 676-805, gnl|hg17|chr11 (116167503-116167652) | |
| 676-805, gnl|Hg17|chr11 (116167505-116167634) | |
| 676-805, gnl|loxAfr1|scaffold_12853 (14094-13944) | |
| 676-805, gnl|mm7|chr9 (46227463-46227328) | |
| 676-805, gnl|Mm7|chr9 (46227459-46227338) | |
| 676-805, gnl|monDom2|scaffold_2 (122543897-122543758) | |
| 676-805, gnl|panTro1|chr9 (118167340-118167490) | |
| 676-805, gnl|rheMac2|chr14 (115188895-115189044) | |
| 676-805, gnl|rn3|chr8 (49265593-49265459) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-608, gnl|bosTau2|chr15 (13267350-13266743) | |
| 1-608, gnl|canFam2|chr5 (19782111-19781211) | |
| 1-608, gnl|dasNov1|scaffold_106384 (1464-564) | |
| 1-608, gnl|echTel1|scaffold_96979 (2190-3090) | |
| 1-608, gnl|galGal2|chr24_random (115780-116618) | |
| 1-608, gnl|hg17|chr11 (116166139-116167027) | |
| 1-608, gnl|Hg17|chr11 (116166303-116166904) | |
| 1-608, gnl|loxAfr1|scaffold_12853 (15344-14446) | |
| 1-608, gnl|mm7|chr9 (46228763-46227859) | |
| 1-608, gnl|Mm7|chr9 (46228597-46227990) | |
| 1-608, gnl|monDom2|scaffold_2 (122545526-122544623) | |
| 1-608, gnl|oryCun1|scaffold_151681 (3646-2746) | |
| 1-608, gnl|panTro1|chr9 (118165973-118166861) | |
| 1-608, gnl|rheMac2|chr14 (115187528-115188416) | |
| 1-608, gnl|rn3|chr8 (49266818-49265916) | |
| 676-805, gnl|bosTau2|chr15 (13265952-13265829) | |
| 676-805, gnl|canFam2|chr5 (19780725-19780576) | |
| 676-805, gnl|dasNov1|scaffold_106384 (125-4) | |
| 676-805, gnl|echTel1|scaffold_96979 (3550-3697) | |
| 676-805, gnl|galGal2|chr24_random (116701-116853) | |
| 676-805, gnl|hg17|chr11 (116167503-116167652) | |
| 676-805, gnl|Hg17|chr11 (116167505-116167634) | |
| 676-805, gnl|loxAfr1|scaffold_12853 (14094-13944) | |
| 676-805, gnl|mm7|chr9 (46227463-46227328) | |
| 676-805, gnl|Mm7|chr9 (46227459-46227338) | |
| 676-805, gnl|monDom2|scaffold_2 (122543897-122543758) | |
| 676-805, gnl|panTro1|chr9 (118167340-118167490) | |
| 676-805, gnl|rheMac2|chr14 (115188895-115189044) | |
| 676-805, gnl|rn3|chr8 (49265593-49265459) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |