Ss1.1-Liv1-LVR010078B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCCGAGGGGGAGGTGAGGCTGAGGAGAAGGGACAGGTCTGGGCAGAGCTCGGGGGTTG GCACCAGTTCGCGCACCCATTCAAGCGGTCAAGCGGCTGTACGCACTCGTCAGAGCAGTT CTCGCTAACTGCTCTAGCTGCGTCTTCTGCGCTCCAGCACCGGTGAGCTCATCTGCAAAC GTCCTGGCGTCCGTCCTCACCATGCCTAACCTTTGGGATCGCTTCTCGTCGTCCTCCTCC TCTTCGTCTTCGTCCTTGTCCCGAACTCCCACCCCAAATCAGCCTCCGCGTTCAGCCTGG GGGTCAGCGGCCCGGGAAGAAGGGCTCGGTCGCTGCGCGAGCCTGGAGAGCTCGGACTGC GAGTCCTTGGACAGCAGCAACAGTGGCTTTGGGCCGGAGGAAGACTCTGCATACCTGGAT GGGGTGTCCCTGCCTGACTTCGAGCTGCTCAGCGACCCTGAGGATGAGCACCTGTGTGCC AGCCTGATGCAGCTGCTGCAGGAGAGCCTGGCCCAGGCGCGGCTGGGCTCGCGGCGCCCC GCGCGCCTGCTGATGCCCGGCCAGCTGGTGAGCCAGGTGGGCAAAGAACTGCTGCGCCTG GCCTATAGTGAGCCGTGCGGCCTGCGGGGGGCGCTGCTGGACGTCTGCGTAGAGCAGGGC AAGAGCTGCCACAGCGTGGGCCAGCTGGCCCTCGACCCCAGCCTTGTGCCCACCTTCCAG CTGACCCTCGTGCTGCGCCTGGACTCACGCCTCTGGCCTAAGATCCAGGGGCTGTTTAGC TCCGCCAACTCTCCCTTCGTCCCCGGCTTCAGCCAGTCCCTGACGCTGAGCACTGGCTTC CGAGTCATCAAGAAGAAGCTGTACAGCTCCGAGCAGCTGCTCATTGAAGAATGTTGAACT TGGGCCTGGGGGCCGACACTGCCCCCATGGCAGAGACAGTTGAACTTTTGGGGTGGACGT TGGCAGGCAGGAGCTGAGGGCCTGTTGCCTGTCGTTAGAAAACTGACAACAGCCACCTGA GGGGAGGAAGGCTGAGCTGGGGGGAACCTACTGTTTCCCTAGAAAGCTCAATGGGGCATG TATGGGTGGCTCCCAGTTGGGGGCACACCCCGCCCCTCTGTACTGTAGCATGAAACAAAG GCTTAGGGGCCAACCAGGCTTCTGGCTGGATGTGTTATGTAGCATGTACCTTATTATTTT TATTGTTACTGACAGTAAGACAGTTAAGTCAACAGTGGTGTGACAGAGCCAGGAGAGCAG CTGGGCTGCACTGGCCTCTGCAAGGGGGGATGTGTGCTCGCTGCAGCCAGCCCTGGTGGG AGGGGGGAGGTCATGGAGGTGGTTTGTGTATCTTATGGTCCGAAGGGGCCAAATGTCTGT TCTTTGTTTTTTGTATCTTTTGTTTGTTTGTTTGTTTGTTTTGATCAGAGCTTCACTACT GACCTGTTCCAGGCAGCTATCTTACAGACGCATGAATGTAAGAGTAGGAAGGGGTGGGTG TTAGGATCACTTGGGGATCTTTGACACTTGAAGAAAAAAATACACCTGGAAGCTGCGTTT GGCCCATCCCCAGATGTGGACTGAAGGGTCACCCTGTAAGGGGATGGGGCTGATTGGGCT GGGGGCTGGAACCCCTCCCCCAGAGGAGTACCATCTGGGTCTTCCATCTAGAACTGTTTA CATGAAGATACTCGCTGTTCATGAATACACTTGATGTTCAAGTATTAAGACCTATGCAAT ATTTTGTACTTTTCTAATAAAAAAGAAAATGTTTGTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCCGAGGGGGAGGTGAGGCTGAGGAGAAGGGACAGGTCTGGGCAGAGCTCGGGGGTTG GCACCAGTTCGCGCACCCATTCAAGCGGTCAAGCGGCTGTACGCACTCGTCAGAGCAGTT CTCGCTAACTGCTCTAGCTGCGTCTTCTGCGCTCCAGCACCGGTGAGCTCATCTGCAAAC GTCCTGGCGTCCGTCCTCACCATGCCTAACCTTTGGGATCGCTTCTCGTCGTCCTCCTCC TCTTCGTCTTCGTCCTTGTCCCGAACTCCCACCCCAAATCAGCCTCCGCGTTCAGCCTGG GGGTCAGCGGCCCGGGAAGAAGGGCTCGGTCGCTGCGCGAGCCTGGAGAGCTCGGACTGC GAGTCCTTGGACAGCAGCAACAGTGGCTTTGGGCCGGAGGAAGACTCTGCATACCTGGAT GGGGTGTCCCTGCCTGACTTCGAGCTGCTCAGCGACCCTGAGGATGAGCACCTGTGTGCC AGCCTGATGCAGCTGCTGCAGGAGAGCCTGGCCCAGGCGCGGCTGGGCTCGCGGCGCCCC GCGCGCCTGCTGATGCCCGGCCAGCTGGTGAGCCAGGTGGGCAAAGAACTGCTGCGCCTG GCCTATAGTGAGCCGTGCGGCCTGCGGGGGGCGCTGCTGGACGTCTGCGTAGAGCAGGGC AAGAGCTGCCACAGCGTGGGCCAGCTGGCCCTCGACCCCAGCCTTGTGCCCACCTTCCAG CTGACCCTCGTGCTGCGCCTGGACTCACGCCTCTGGCCTAAGATCCAGGGGCTGTTTAGC TCCGCCAACTCTCCCTTCGTCCCCGGCTTCAGCCAGTCCCTGACGCTGAGCACTGGCTTC CGAGTCATCAAGAAGAAGCTGTACAGCTCCGAGCAGCTGCTCATTGAAGAATGTTGAACT TGGGCCTGGGGGCCGACACTGCCCCCATGGCAGAGACAGTTGAACTTTTGGGGTGGACGT TGGCAGGCAGGAGCTGAGGGCCTGTTGCCTGTCGTTAGAAAACTGACAACAGCCACCTGA GGGGAGGAAGGCTGAGCTGGGGGGAACCTACTGTTTCCCTAGAAAGCTCAATGGGGCATG TATGGGTGGCTCCCAGTTGGGGGCACACCCCGCCCCTCTGTACTGTAGCATGAAACAAAG GCTTAGGGGCCAACCAGGCTTCTGGCTGGATGTGTTATGTAGCATGTACCTTATTATTTT TATTGTTACTGACAGTAAGACAGTTAAGTCAACAGTGGTGTGACAGAGCCAGGAGAGCAG CTGGGCTGCACTGGCCTCTGCAAGGGGGGATGTGTGCTCGCTGCAGCCAGCCCTGGTGGG AGGGGGGAGGTCATGGAGGTGGTTTGTGTATCTTATGGTCCGAAGGGGCCAAATGTCTGT TCTTTGTTTTTTGTATCTTTTGTTTGTTTGTTTGTTTGTTTTGATCAGAGCTTCACTACT GACCTGTTCCAGGCAGCTATCTTACAGACGCATGAATGTAAGAGTAGGAAGGGGTGGGTG TTAGGATCACTTGGGGATCTTTGACACTTGAAGAAAAAAATACACCTGGAAGCTGCGTTT GGCCCATCCCCAGATGTGGACTGAAGGGTCACCCTGTAAGGGGATGGGGCTGATTGGGCT GGGGGCTGGAACCCCTCCCCCAGAGGAGTACCATCTGGGTCTTCCATCTAGAACTGTTTA CATGAAGATACTCGCTGTTCATGAATACACTTGATGTTCAAGTATTAAGACCTATGCAAT ATTTTGTACTTTTCTAATAAAAAAGAAAATGTTTGTTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 721-1726, - strand, RNAz p=0.876451 | |
| 942-1327, + strand, RNAz p=0.915016 | |
| 1399-1499, - strand, RNAz p=0.606685 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 721-1726, - strand, RNAz p=0.876451 | |
| 942-1327, + strand, RNAz p=0.915016 | |
| 1399-1499, - strand, RNAz p=0.606685 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_019058, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-140, gnl|bosTau2|chr28 (20780041-20779910) | |
| 1-140, gnl|canFam2|chr4 (26127659-26127952) | |
| 1-140, gnl|echTel1|scaffold_313289 (6401-6670) | |
| 1-140, gnl|hg17|chr10 (73703645-73703909) | |
| 1-140, gnl|Hg17|chr10 (73703693-73703824) | |
| 1-140, gnl|loxAfr1|scaffold_31196 (52799-52545) | |
| 1-140, gnl|mm7|chr10 (59470072-59469781) | |
| 1-140, gnl|Mm7|chr10 (59470020-59469892) | |
| 1-140, gnl|monDom2|scaffold_14 (272058-272401) | |
| 1-140, gnl|oryCun1|scaffold_205999 (7171-6901) | |
| 1-140, gnl|panTro1|chr8 (74932660-74932930) | |
| 1-140, gnl|rheMac2|chr9 (64721791-64721532) | |
| 1-140, gnl|rn3|chr20 (27268229-27267938) | |
| 402-1391, gnl|bosTau2|chr28 (20779260-20778281) | |
| 402-1391, gnl|Hg17|chr10 (73704457-73705438) | |
| 402-1391, gnl|Mm7|chr10 (59469226-59468241) | |
| 1399-1781, gnl|bosTau2|chr28 (20778297-20777919) | |
| 1399-1781, gnl|Hg17|chr10 (73705415-73705798) | |
| 1399-1781, gnl|Mm7|chr10 (59468263-59467866) | |
| 1635-1762, gnl|bosTau2|chr25 (15048622-15048495) | |
| 1635-1762, gnl|canFam2|chr6 (32031850-32031144) | |
| 1635-1762, gnl|hg17|chr16 (14177323-14178071) | |
| 1635-1762, gnl|Mm7|chr10 (59468006-59467878) | |
| 1635-1762, gnl|panTro1|chr18 (14594049-14594802) | |
| 1635-1762, gnl|rheMac2|chr20 (14283113-14283868) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-140, gnl|bosTau2|chr28 (20780041-20779910) | |
| 1-140, gnl|canFam2|chr4 (26127659-26127952) | |
| 1-140, gnl|echTel1|scaffold_313289 (6401-6670) | |
| 1-140, gnl|hg17|chr10 (73703645-73703909) | |
| 1-140, gnl|Hg17|chr10 (73703693-73703824) | |
| 1-140, gnl|loxAfr1|scaffold_31196 (52799-52545) | |
| 1-140, gnl|mm7|chr10 (59470072-59469781) | |
| 1-140, gnl|Mm7|chr10 (59470020-59469892) | |
| 1-140, gnl|monDom2|scaffold_14 (272058-272401) | |
| 1-140, gnl|oryCun1|scaffold_205999 (7171-6901) | |
| 1-140, gnl|panTro1|chr8 (74932660-74932930) | |
| 1-140, gnl|rheMac2|chr9 (64721791-64721532) | |
| 1-140, gnl|rn3|chr20 (27268229-27267938) | |
| 402-1391, gnl|bosTau2|chr28 (20779260-20778281) | |
| 402-1391, gnl|Hg17|chr10 (73704457-73705438) | |
| 402-1391, gnl|Mm7|chr10 (59469226-59468241) | |
| 1399-1781, gnl|bosTau2|chr28 (20778297-20777919) | |
| 1399-1781, gnl|Hg17|chr10 (73705415-73705798) | |
| 1399-1781, gnl|Mm7|chr10 (59468263-59467866) | |
| 1635-1762, gnl|bosTau2|chr25 (15048622-15048495) | |
| 1635-1762, gnl|canFam2|chr6 (32031850-32031144) | |
| 1635-1762, gnl|hg17|chr16 (14177323-14178071) | |
| 1635-1762, gnl|Mm7|chr10 (59468006-59467878) | |
| 1635-1762, gnl|panTro1|chr18 (14594049-14594802) | |
| 1635-1762, gnl|rheMac2|chr20 (14283113-14283868) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| pla (0.935704) | |
| eep (0.735384) | |
| cov (0.660764) | |
| nco (0.485201) | |
| amn (0.417711) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| eru (0.360144) | |
| ebs (0.354904) | |
| mcp (0.341297) | |
| pty (0.285429) | |
| jej (0.197844) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.935704) | |
| eep (0.735384) | |
| cov (0.660764) | |
| nco (0.485201) | |
| amn (0.417711) | |
| nmm (0.398406) | |
| elu (0.385356) | |
| eru (0.360144) | |
| ebs (0.354904) | |
| mcp (0.341297) | |
| pty (0.285429) | |
| jej (0.197844) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |