Ss1.1-Liv1-LVR010078F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTCGTGCCCTTGAGAATTAGCCACAATGATTCCTCCGGTGCTCATCTTTTTCCTGAGT TTTCTCTGCCATGCTGCTATCGCAGGGCGAACCTGTCCCAAGCCGGAAGAGTTACCGTTT GCCGTAGTTGTGCCGTTGAAATCATCCTATGCGCCAGGGGAGGAGATAGTGTATACCTGC CAGCCGGGGTACGTGTCCCGGGGAGGGATCCGGCGGTTTATCTGCCCGCTCACAGGACTT TGGCCCATCAACACTCTGAAATGTCTACCCAGAGTATGTCCTTTTGCTGGAATCTTAGAA AACGGAGCTGTACGCTATACAACTTTTGAGTATCCCAACACGATCAGTTTCACTTGCAAC CGGGGTTTTTCTCTGAAAGGAGCTAATTCGGCTAAATGTACCGAGGAAGGAAAATGGAGT CCAGACCTTCCTGTCTGTACCCCTATAACCTGCCCTCCACCACCCACACCCAAGTTTGCA AAACTTAGTGTTTATAAGCCATTGGCTGGGAACAACTCTCTCTATGGAGGCAAGGCAGTC TTTGAATGCTTGCCACAGCACGCAATGTTTGGAAATGGTACAATTACTTGCACAGAACAT GGAAATTGGACTGAATTACCAGAATGTAAGGAAGTAAAATGCCCATTCCCATCAAGACCA GAAAACGGATTTGTGAACTATCCTGCAAAGCAAGTTCTTTATTACCAGGATAAAGCCACA TATGGTTGCCATGACACTTACACCTTGGATGGACCAGAAGAAGTTGAATGTAACAAATTT GGAAACTGGTCTGCACAGCCCAGCTGTAAAGCATCTTGTAAATTATCTGTGAAAAGAGCT ACTGTGATATATGAAGGAGAGAGAGTCAATATCCAAGATAAATTTAAGAATGGAATGCTG CATGGCCAAAAAATTTCTTTCTTCTGCAAGAATAAGGAAAAGAAGTGCAGCTATACGGAG GATGCCCAGTGCATAGACGGCACCATTGAAATCCCCAAATGCTTCAAGGAGCACAGTGCT TTGGCTTTCTGGAAAACGGATGCATCAGATGTAAAGCCATGCTAAGCTGGCGTTAAGATT CAAAATTAAATATCACACTTGTATGTATTTGTCCAAGGAACCTAATGGAAGTGAAAAAAT AAATCGACTGAATTTATTGCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTCGTGCCCTTGAGAATTAGCCACAATGATTCCTCCGGTGCTCATCTTTTTCCTGAGT TTTCTCTGCCATGCTGCTATCGCAGGGCGAACCTGTCCCAAGCCGGAAGAGTTACCGTTT GCCGTAGTTGTGCCGTTGAAATCATCCTATGCGCCAGGGGAGGAGATAGTGTATACCTGC CAGCCGGGGTACGTGTCCCGGGGAGGGATCCGGCGGTTTATCTGCCCGCTCACAGGACTT TGGCCCATCAACACTCTGAAATGTCTACCCAGAGTATGTCCTTTTGCTGGAATCTTAGAA AACGGAGCTGTACGCTATACAACTTTTGAGTATCCCAACACGATCAGTTTCACTTGCAAC CGGGGTTTTTCTCTGAAAGGAGCTAATTCGGCTAAATGTACCGAGGAAGGAAAATGGAGT CCAGACCTTCCTGTCTGTACCCCTATAACCTGCCCTCCACCACCCACACCCAAGTTTGCA AAACTTAGTGTTTATAAGCCATTGGCTGGGAACAACTCTCTCTATGGAGGCAAGGCAGTC TTTGAATGCTTGCCACAGCACGCAATGTTTGGAAATGGTACAATTACTTGCACAGAACAT GGAAATTGGACTGAATTACCAGAATGTAAGGAAGTAAAATGCCCATTCCCATCAAGACCA GAAAACGGATTTGTGAACTATCCTGCAAAGCAAGTTCTTTATTACCAGGATAAAGCCACA TATGGTTGCCATGACACTTACACCTTGGATGGACCAGAAGAAGTTGAATGTAACAAATTT GGAAACTGGTCTGCACAGCCCAGCTGTAAAGCATCTTGTAAATTATCTGTGAAAAGAGCT ACTGTGATATATGAAGGAGAGAGAGTCAATATCCAAGATAAATTTAAGAATGGAATGCTG CATGGCCAAAAAATTTCTTTCTTCTGCAAGAATAAGGAAAAGAAGTGCAGCTATACGGAG GATGCCCAGTGCATAGACGGCACCATTGAAATCCCCAAATGCTTCAAGGAGCACAGTGCT TTGGCTTTCTGGAAAACGGATGCATCAGATGTAAAGCCATGCTAAGCTGGCGTTAAGATT CAAAATTAAATATCACACTTGTATGTATTTGTCCAAGGAACCTAATGGAAGTGAAAAAAT AAATCGACTGAATTTATTGCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 92-263, gnl|bosTau2|chr19 (50035908-50035737) | |
| 92-263, gnl|canFam2|chr9 (17212512-17212263) | |
| 92-263, gnl|dasNov1|scaffold_120456 (4362-4598) | |
| 92-263, gnl|echTel1|scaffold_314636 (42646-42895) | |
| 92-263, gnl|hg17|chr17 (61654558-61654809) | |
| 92-263, gnl|Hg17|chr17 (61654776-61654605) | |
| 92-263, gnl|loxAfr1|scaffold_163966 (4526-4776) | |
| 92-263, gnl|mm7|chr11 (108505077-108504822) | |
| 92-263, gnl|Mm7|chr11 (108504857-108505028) | |
| 92-263, gnl|monDom2|scaffold_18 (19756873-19756626) | |
| 92-263, gnl|oryCun1|scaffold_189583 (4563-4811) | |
| 92-263, gnl|panTro1|chr19_random (50497917-50497666) | |
| 92-263, gnl|rheMac2|chr16 (61616120-61616371) | |
| 92-263, gnl|rn3|chr10 (97740142-97739883) | |
| 443-631, gnl|bosTau2|chr19 (50032082-50031894) | |
| 443-631, gnl|canFam2|chr9 (17217729-17217373) | |
| 443-631, gnl|echTel1|scaffold_314636 (36018-36370) | |
| 443-631, gnl|hg17|chr17 (61647027-61647392) | |
| 443-631, gnl|Hg17|chr17 (61647322-61647134) | |
| 443-631, gnl|mm7|chr11 (108516637-108516272) | |
| 443-631, gnl|Mm7|chr11 (108516332-108516520) | |
| 443-631, gnl|monDom2|scaffold_18 (19762810-19762440) | |
| 443-631, gnl|oryCun1|scaffold_182773 (1252-885) | |
| 443-631, gnl|panTro1|chr19_random (50404055-50403690) | |
| 443-631, gnl|rheMac2|chr16 (61608809-61609171) | |
| 443-631, gnl|rn3|chr10 (97747457-97747090) | |
| 810-1009, gnl|bosTau2|chr19 (50026351-50026152) | |
| 810-1009, gnl|Hg17|chr17 (61641232-61641033) | |
| 810-1009, gnl|Mm7|chr11 (108521034-108521233) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-263, gnl|bosTau2|chr19 (50035908-50035737) | |
| 92-263, gnl|canFam2|chr9 (17212512-17212263) | |
| 92-263, gnl|dasNov1|scaffold_120456 (4362-4598) | |
| 92-263, gnl|echTel1|scaffold_314636 (42646-42895) | |
| 92-263, gnl|hg17|chr17 (61654558-61654809) | |
| 92-263, gnl|Hg17|chr17 (61654776-61654605) | |
| 92-263, gnl|loxAfr1|scaffold_163966 (4526-4776) | |
| 92-263, gnl|mm7|chr11 (108505077-108504822) | |
| 92-263, gnl|Mm7|chr11 (108504857-108505028) | |
| 92-263, gnl|monDom2|scaffold_18 (19756873-19756626) | |
| 92-263, gnl|oryCun1|scaffold_189583 (4563-4811) | |
| 92-263, gnl|panTro1|chr19_random (50497917-50497666) | |
| 92-263, gnl|rheMac2|chr16 (61616120-61616371) | |
| 92-263, gnl|rn3|chr10 (97740142-97739883) | |
| 443-631, gnl|bosTau2|chr19 (50032082-50031894) | |
| 443-631, gnl|canFam2|chr9 (17217729-17217373) | |
| 443-631, gnl|echTel1|scaffold_314636 (36018-36370) | |
| 443-631, gnl|hg17|chr17 (61647027-61647392) | |
| 443-631, gnl|Hg17|chr17 (61647322-61647134) | |
| 443-631, gnl|mm7|chr11 (108516637-108516272) | |
| 443-631, gnl|Mm7|chr11 (108516332-108516520) | |
| 443-631, gnl|monDom2|scaffold_18 (19762810-19762440) | |
| 443-631, gnl|oryCun1|scaffold_182773 (1252-885) | |
| 443-631, gnl|panTro1|chr19_random (50404055-50403690) | |
| 443-631, gnl|rheMac2|chr16 (61608809-61609171) | |
| 443-631, gnl|rn3|chr10 (97747457-97747090) | |
| 810-1009, gnl|bosTau2|chr19 (50026351-50026152) | |
| 810-1009, gnl|Hg17|chr17 (61641232-61641033) | |
| 810-1009, gnl|Mm7|chr11 (108521034-108521233) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| lun (19.2626) | |
| cli (3.82029) | |
| fli (2.43457) | |
| eli (1.21451) | |
| eje (0.296501) | |
| liv (0.292569) | |
| ski (0.146735) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (19.2626) | |
| cli (3.82029) | |
| fli (2.43457) | |
| eli (1.21451) | |
| eje (0.296501) | |
| liv (0.292569) | |
| ski (0.146735) |