Ss1.1-Liv1-LVR010078H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTTGCTCACTGTTGAGAGGTCTCCGGGTAGCAGTGCAGTATTGTCACCTGACTCCGGT CTCAGTCCTTCATGGCTGCCGCGCTGCTCGCCCGAGCCTGCGGCCCTGTCCGCGGAGCTC TCTGGCCTCGGGACTGTCGTCGCTTGCATACCATCTTCCAGTCTGTGGAACTGCCTGAGA CATACCAGATGCTGCGTCAGACATGCCGGGATTTTGCCGAGAAGGAGCTGGTTCCCATTG CAGCCCAGGTGGACAAGGAACATCGCTTCCCGGAGGCTCAGGTGAAGAAGATGGGCGAGC TGGGGCTCATGGCCATGGATGTGCCCGAGGAGTTAAGTGGTGCCGGCCTGGATTACCTGG CCTACACCATCGCCATGGAGGAGATCAGCCGGGGCTGCGCCTCCACCGGAGTCATCATGA GTGTCAACAATTCTCTCTACTTGGGACCTATCCTGAAGTTTGGCTCCAAGGAGCAGAAAC AGCAGTGGATCACTCCTTTCACCAGTGGTGACAAAGTTGGCTGCTTTGCCCTCAGTGAAC CAGGGAACGGCAGCGACGCGGGGGCTGCTGCCACCACCGCCCAGGCAGACCATGACTCGT GGGTCCTGAGTGGCACCAAAGCCTGGATCACCAACGCCTGGGAGGCCTCGGCCGCCGTGG TCTTCGCCAGCACGGACAGATCCTTGCAGAACAAGGGCATCAGCGCCTTCCTGGTTCCCA TGCCGACGCCTGGGCTCACGCTAGGGAAGAAAGAGGACAAGCTGGGCATCCGGGCCTCAT CCACCGCCAACCTCATCTTTGAGGACTGTCGCATCCCCAAGGAGAACCTGCTGGGGGAGC CTGGCATGGGCTTCAAGATCGCCATGCAAACCCTGGACATGGGCCGCATCGGCATTGCCT CTCAGGCCCTGGGCATTGCCCAGGCCGCCCTGGACTGTGCTGTGAACTATGCTGAAAACC GCAGGGCCTTTGGGGTGCCGCTCACCAAGCTCCAGGGCATCCAGTTCAAGTTGGCGGACA TGGCCTTGGCCCTGGAGAGTGCCCGGCTGCTGACCTGGCGCGCTGCTATGCTGAAGGATA ATAAGAAGCCATTCATCAAGGAGGCGGCAATGGCCAAGCTGGCTGCATCGGAGGCTGCAA CTGCCATCACCCACCAGGCCATGCAGATCTTGGGTGGCATGGGCTATGTGACAGAGATGC CTGCTGAGCGGCACTACCGTGACGCCCGCATCACTGAGATTTACGAAGGCACCAGTGAGA TCCAGAGGCTGGTGATCGCCGGGCACCTGCTCAAGAGCTACAGGAGCTGAGCCCTCTGTA GGGCCAACCAGTGCCCTCCGGAGGCAGGGCTGGCCTGAGGGTCACGGGAGAGGCGGCGGA GCCATGTGCCTTTACCCTGACTCCAAGTCAGGGGGCCACGCCTCCTCTTGCCAGGACTCC CCCAGAACCCAGCCCTTCTGGGTGGACCTGCCACTCTCACCCTCATCCACCCGGGAATAG ACTGCCAGGGAGCACATCTCAGAGGAAGGAAAGGTGGGCCTGTGACCTGGCCTGAGGACC CCCATCTTCAGCTCAGTTTCTTGGCTTTGCTCCCTCTCACCATCACCTGTGCCTTATTTT CTTCATCTGGAGGCAGGGCCGTGGAAAGAGCGAAATTATCACTCAGGGACTCCCCAGCTC TGTTCTTTGTGTCCTGGTGCTCAGCATGAGACCCAGGTGTGACTGCTTTTGGCAGTGTCT GCTTTTTCCCCTGAGGTCAGAGTTCGGGAGGAGTAGTTTGGGGGCCAGAATGACCAGGCT TCAAAGCAGCAGAAATTGTGTTCTCAGGCCTCTGGCAGTCTTGGGGTTGGATCATTGTGG AAGCTGCCCTGCCCTGCGCCCCTTTAACCTTTTTTTGTCAGGTGTAAATAAGTGATTGGG GCCAGTCACATGTGGGAACTAAGTAATAAAGCATACCTGTCCCTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTTGCTCACTGTTGAGAGGTCTCCGGGTAGCAGTGCAGTATTGTCACCTGACTCCGGT CTCAGTCCTTCATGGCTGCCGCGCTGCTCGCCCGAGCCTGCGGCCCTGTCCGCGGAGCTC TCTGGCCTCGGGACTGTCGTCGCTTGCATACCATCTTCCAGTCTGTGGAACTGCCTGAGA CATACCAGATGCTGCGTCAGACATGCCGGGATTTTGCCGAGAAGGAGCTGGTTCCCATTG CAGCCCAGGTGGACAAGGAACATCGCTTCCCGGAGGCTCAGGTGAAGAAGATGGGCGAGC TGGGGCTCATGGCCATGGATGTGCCCGAGGAGTTAAGTGGTGCCGGCCTGGATTACCTGG CCTACACCATCGCCATGGAGGAGATCAGCCGGGGCTGCGCCTCCACCGGAGTCATCATGA GTGTCAACAATTCTCTCTACTTGGGACCTATCCTGAAGTTTGGCTCCAAGGAGCAGAAAC AGCAGTGGATCACTCCTTTCACCAGTGGTGACAAAGTTGGCTGCTTTGCCCTCAGTGAAC CAGGGAACGGCAGCGACGCGGGGGCTGCTGCCACCACCGCCCAGGCAGACCATGACTCGT GGGTCCTGAGTGGCACCAAAGCCTGGATCACCAACGCCTGGGAGGCCTCGGCCGCCGTGG TCTTCGCCAGCACGGACAGATCCTTGCAGAACAAGGGCATCAGCGCCTTCCTGGTTCCCA TGCCGACGCCTGGGCTCACGCTAGGGAAGAAAGAGGACAAGCTGGGCATCCGGGCCTCAT CCACCGCCAACCTCATCTTTGAGGACTGTCGCATCCCCAAGGAGAACCTGCTGGGGGAGC CTGGCATGGGCTTCAAGATCGCCATGCAAACCCTGGACATGGGCCGCATCGGCATTGCCT CTCAGGCCCTGGGCATTGCCCAGGCCGCCCTGGACTGTGCTGTGAACTATGCTGAAAACC GCAGGGCCTTTGGGGTGCCGCTCACCAAGCTCCAGGGCATCCAGTTCAAGTTGGCGGACA TGGCCTTGGCCCTGGAGAGTGCCCGGCTGCTGACCTGGCGCGCTGCTATGCTGAAGGATA ATAAGAAGCCATTCATCAAGGAGGCGGCAATGGCCAAGCTGGCTGCATCGGAGGCTGCAA CTGCCATCACCCACCAGGCCATGCAGATCTTGGGTGGCATGGGCTATGTGACAGAGATGC CTGCTGAGCGGCACTACCGTGACGCCCGCATCACTGAGATTTACGAAGGCACCAGTGAGA TCCAGAGGCTGGTGATCGCCGGGCACCTGCTCAAGAGCTACAGGAGCTGAGCCCTCTGTA GGGCCAACCAGTGCCCTCCGGAGGCAGGGCTGGCCTGAGGGTCACGGGAGAGGCGGCGGA GCCATGTGCCTTTACCCTGACTCCAAGTCAGGGGGCCACGCCTCCTCTTGCCAGGACTCC CCCAGAACCCAGCCCTTCTGGGTGGACCTGCCACTCTCACCCTCATCCACCCGGGAATAG ACTGCCAGGGAGCACATCTCAGAGGAAGGAAAGGTGGGCCTGTGACCTGGCCTGAGGACC CCCATCTTCAGCTCAGTTTCTTGGCTTTGCTCCCTCTCACCATCACCTGTGCCTTATTTT CTTCATCTGGAGGCAGGGCCGTGGAAAGAGCGAAATTATCACTCAGGGACTCCCCAGCTC TGTTCTTTGTGTCCTGGTGCTCAGCATGAGACCCAGGTGTGACTGCTTTTGGCAGTGTCT GCTTTTTCCCCTGAGGTCAGAGTTCGGGAGGAGTAGTTTGGGGGCCAGAATGACCAGGCT TCAAAGCAGCAGAAATTGTGTTCTCAGGCCTCTGGCAGTCTTGGGGTTGGATCATTGTGG AAGCTGCCCTGCCCTGCGCCCCTTTAACCTTTTTTTGTCAGGTGTAAATAAGTGATTGGG GCCAGTCACATGTGGGAACTAAGTAATAAAGCATACCTGTCCCTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 260-1441, - strand, RNAz p=0.986664 | |
| 460-579, - strand, RNAz p=0.864324 | |
| 759-876, + strand, RNAz p=0.825818 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 260-1441, - strand, RNAz p=0.986664 | |
| 460-579, - strand, RNAz p=0.864324 | |
| 759-876, + strand, RNAz p=0.825818 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 260-431, gnl|bosTau2|chr17 (36329950-36329781) | |
| 260-431, gnl|Hg17|chr12 (119637489-119637658) | |
| 260-431, gnl|Mm7|chr5 (114334066-114333897) | |
| 432-582, gnl|bosTau2|chr17 (36329570-36329423) | |
| 432-582, gnl|canFam2|chr26 (19607978-19608104) | |
| 432-582, gnl|danRer3|chr19 (35090684-35090804) | |
| 432-582, gnl|echTel1|scaffold_208316 (5544-5664) | |
| 432-582, gnl|fr1|chrUn (262195344-262195224) | |
| 432-582, gnl|galGal2|chr15 (9113616-9113496) | |
| 432-582, gnl|hg17|chr12 (119637874-119637994) | |
| 432-582, gnl|Hg17|chr12 (119637879-119638028) | |
| 432-582, gnl|mm7|chr5 (114333716-114333596) | |
| 432-582, gnl|Mm7|chr5 (114333709-114333564) | |
| 432-582, gnl|monDom2|scaffold_145 (1669758-1669639) | |
| 432-582, gnl|oryCun1|scaffold_115634 (2931-2811) | |
| 432-582, gnl|panTro1|chr10 (122698464-122698584) | |
| 432-582, gnl|rheMac2|chr11 (121773448-121773568) | |
| 432-582, gnl|rn3|chr12 (42635476-42635596) | |
| 432-582, gnl|tetNig1|chrUn_random (449609-449729) | |
| 432-582, gnl|xenTro1|scaffold_9 (5020377-5020495) | |
| 694-876, gnl|bosTau2|chr17 (36328688-36328506) | |
| 694-876, gnl|Hg17|chr12 (119638801-119638983) | |
| 694-876, gnl|Mm7|chr5 (114332862-114332680) | |
| 1141-1963, gnl|bosTau2|chr17 (36327613-36326789) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-431, gnl|bosTau2|chr17 (36329950-36329781) | |
| 260-431, gnl|Hg17|chr12 (119637489-119637658) | |
| 260-431, gnl|Mm7|chr5 (114334066-114333897) | |
| 432-582, gnl|bosTau2|chr17 (36329570-36329423) | |
| 432-582, gnl|canFam2|chr26 (19607978-19608104) | |
| 432-582, gnl|danRer3|chr19 (35090684-35090804) | |
| 432-582, gnl|echTel1|scaffold_208316 (5544-5664) | |
| 432-582, gnl|fr1|chrUn (262195344-262195224) | |
| 432-582, gnl|galGal2|chr15 (9113616-9113496) | |
| 432-582, gnl|hg17|chr12 (119637874-119637994) | |
| 432-582, gnl|Hg17|chr12 (119637879-119638028) | |
| 432-582, gnl|mm7|chr5 (114333716-114333596) | |
| 432-582, gnl|Mm7|chr5 (114333709-114333564) | |
| 432-582, gnl|monDom2|scaffold_145 (1669758-1669639) | |
| 432-582, gnl|oryCun1|scaffold_115634 (2931-2811) | |
| 432-582, gnl|panTro1|chr10 (122698464-122698584) | |
| 432-582, gnl|rheMac2|chr11 (121773448-121773568) | |
| 432-582, gnl|rn3|chr12 (42635476-42635596) | |
| 432-582, gnl|tetNig1|chrUn_random (449609-449729) | |
| 432-582, gnl|xenTro1|scaffold_9 (5020377-5020495) | |
| 694-876, gnl|bosTau2|chr17 (36328688-36328506) | |
| 694-876, gnl|Hg17|chr12 (119638801-119638983) | |
| 694-876, gnl|Mm7|chr5 (114332862-114332680) | |
| 1141-1963, gnl|bosTau2|chr17 (36327613-36326789) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cov (0.528611) | |
| mas (0.42061) | |
| cty (0.41632) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| ssp (0.271039) | |
| nms (0.213858) | |
| col (0.195008) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| mas (0.42061) | |
| cty (0.41632) | |
| fbs (0.350693) | |
| nco (0.323468) | |
| ssp (0.271039) | |
| nms (0.213858) | |
| col (0.195008) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |