Non-Coding RNA Search

Ss1.1-Liv1-LVR010079A09.5

Sequence:


               
               GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTA
ACCTCCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGC
GGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATT
TTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCT
CCAGAGGTTTCGGGTTTGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATG
CAAGGCCGCACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAG
ATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAG
AAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGA
TTGAAATCATGACGGACAGGGGCAGTGGCAAAAAGAGAGGTTTTGCTTTTGTAACTTTTG
ATGACCATGACTCCGTAGACAAGATTGTCATTCAGAAATACCACACTGTGAATGGCCACA
ACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAA
GAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGAAATG
ACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTGGCAGTCGTGGTG
GTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGGAAGCAATT
TTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAACAATCAATCTTCAAATTTTG
GACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCT
ATGGCAGTGGCAGAAGGTTTTAATTATTACTGCCAGGAAACAAAGCTTAGCAGGAGAGGA
GAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCA
CAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGTA
TGGGCAAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTT
CTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGATTTTTTTTTTT
TTTTTTTTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACGCTG
AATAAATGTGTCTTTTTTTAAAAAAAAAAAAAAAAAGTTAGTCTACTCGAAGCCATTTTG
GGTAAATTACCCCAACAGTGTGAAGTTAGAATACCTTCAGGGTGATGCCAGGTTCCATTT
GAAATTTACAACCTGCTTGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCGTTCGTTAGATTACTCCTTTCTGCCCCCGGACGCCGCCGAGTAAGCATCGTTGTA
ACCTCCTCCCCACTACCGTCATGTCTAAGTCAGAGTCTCCCAAAGAGCCCGAACAGCTGC
GGAAGCTCTTCATCGGAGGTTTGAGCTTTGAAACAACCGATGAGAGTCTGAGGAGCCATT
TTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGGGACCCAAACACCAAGCGCT
CCAGAGGTTTCGGGTTTGTCACGTATGCCACTGTGGAGGAGGTGGATGCAGCCATGAATG
CAAGGCCGCACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAG
ATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGATTTTTGTTGGTGGCATTAAAG
AAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACAGTATGGGAAAATCGAAGTGA
TTGAAATCATGACGGACAGGGGCAGTGGCAAAAAGAGAGGTTTTGCTTTTGTAACTTTTG
ATGACCATGACTCCGTAGACAAGATTGTCATTCAGAAATACCACACTGTGAATGGCCACA
ACTGTGAAGTGAGGAAAGCCCTATCCAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAA
GAGGTCGAAGTGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGGTGGTTTTGGTGGAAATG
ACAACTTTGGTCGTGGGGGAAACTTTAGTGGTCGAGGTGGCTTTGGTGGCAGTCGTGGTG
GTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGACGGAAGCAATT
TTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAACAATCAATCTTCAAATTTTG
GACCCATGAAAGGAGGAAATTTTGGAGGCAGAAGTTCTGGCCCTTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCT
ATGGCAGTGGCAGAAGGTTTTAATTATTACTGCCAGGAAACAAAGCTTAGCAGGAGAGGA
GAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGTGAACTCAGCCAAGCA
CAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGTA
TGGGCAAAAAAACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTT
CTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAGGGTTTTAATGTAGATTTTTTTTTTT
TTTTTTTTTTTTGCACCCATGCTGTTGATTGCTAAATGTAATAGTCTGATCATGACGCTG
AATAAATGTGTCTTTTTTTAAAAAAAAAAAAAAAAAGTTAGTCTACTCGAAGCCATTTTG
GGTAAATTACCCCAACAGTGTGAAGTTAGAATACCTTCAGGGTGATGCCAGGTTCCATTT
GAAATTTACAACCTGCTTGGGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2194069|pdb|1HA1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2194069|pdb|1HA1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               882-1080, - strand, RNAz p=0.985536

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               882-1080, - strand, RNAz p=0.985536

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               114-304, gnl|bosTau2|chr21 (47466040-47466229)
               

               
               114-304, gnl|Hg17|chr7 (26010580-26010230)
               

               
               114-304, gnl|Mm7|chr6 (51430538-51430216)
               


               
               350-1212, gnl|bosTau2|chr10 (16293756-16294607)
               

               
               350-1212, gnl|Hg17|chr15 (63896637-63895514)
               

               
               350-1212, gnl|Mm7|chrX (136962154-136963004)
               


               
               1220-1524, gnl|bosTau2|chr11 (34381188-34381491)
               

               
               1220-1524, gnl|Hg17|chr18 (28246007-28245710)
               

               
               1220-1524, gnl|Mm7|chr18 (27984544-27984844)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-304, gnl|bosTau2|chr21 (47466040-47466229)
               

               
               114-304, gnl|Hg17|chr7 (26010580-26010230)
               

               
               114-304, gnl|Mm7|chr6 (51430538-51430216)
               


               
               350-1212, gnl|bosTau2|chr10 (16293756-16294607)
               

               
               350-1212, gnl|Hg17|chr15 (63896637-63895514)
               

               
               350-1212, gnl|Mm7|chrX (136962154-136963004)
               


               
               1220-1524, gnl|bosTau2|chr11 (34381188-34381491)
               

               
               1220-1524, gnl|Hg17|chr18 (28246007-28245710)
               

               
               1220-1524, gnl|Mm7|chr18 (27984544-27984844)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

Help | Less info


               
               med (1.16252)
               

               
               elu (1.15607)
               

               
               eye (0.852515)
               

               
               eje (0.79067)
               

               
               nlu (0.766724)
               

               
               fty (0.527519)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               nco (0.485201)
               

               
               spl (0.429553)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (1.16252)
               

               
               elu (1.15607)
               

               
               eye (0.852515)
               

               
               eje (0.79067)
               

               
               nlu (0.766724)
               

               
               fty (0.527519)
               

               
               sin (0.524843)
               

               
               ova (0.516529)
               

               
               nco (0.485201)
               

               
               spl (0.429553)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               ese (0.379507)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	114-304, gnl\|bosTau2\|chr21 (47466040-47466229)
	114-304, gnl\|Hg17\|chr7 (26010580-26010230)
	114-304, gnl\|Mm7\|chr6 (51430538-51430216)

	350-1212, gnl\|bosTau2\|chr10 (16293756-16294607)
	350-1212, gnl\|Hg17\|chr15 (63896637-63895514)
	350-1212, gnl\|Mm7\|chrX (136962154-136963004)

	1220-1524, gnl\|bosTau2\|chr11 (34381188-34381491)
	1220-1524, gnl\|Hg17\|chr18 (28246007-28245710)
	1220-1524, gnl\|Mm7\|chr18 (27984544-27984844)

	med (1.16252)
	elu (1.15607)
	eye (0.852515)
	eje (0.79067)
	nlu (0.766724)
	fty (0.527519)
	sin (0.524843)
	ova (0.516529)
	nco (0.485201)
	spl (0.429553)
	hlv (0.417769)
	amn (0.417711)
	nca (0.410621)
	ese (0.379507)
	nep (0.36785)
	eep (0.367692)
	eru (0.360144)
	cut (0.339847)
	cje (0.330469)
	fat (0.294855)
	ski (0.29347)
	cte (0.29274)
	hyp (0.285673)
	fce (0.271592)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	jca (0.22792)
	nms (0.213858)
	aor (0.195274)
	cmu (0.186393)
	sto (0.179824)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	eli (0.151814)
	liv (0.146284)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	cbl (0.114797)
	spc (0.113366)
	cty (0.10408)
	ldo (0.0970026)